Wall clock time and date at job start Tue Mar 31 2020 18:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48495 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47290 * 299.99668 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99673 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 S 1.65597 * 119.99912 * 180.27700 * 9 7 2 11 11 O 1.42096 * 106.40195 * 178.26333 * 10 9 7 12 12 O 1.42108 * 106.40105 * 311.18390 * 10 9 7 13 13 C 1.76199 * 107.22117 * 64.72090 * 10 9 7 14 14 N 1.31840 * 119.65723 * 89.99733 * 13 10 9 15 15 C 1.31850 * 121.78184 * 179.97438 * 14 13 10 16 16 C 1.38253 * 120.88517 * 0.02562 * 15 14 13 17 17 C 1.38533 * 119.22491 * 359.97438 * 16 15 14 18 18 C 1.38709 * 119.66009 * 269.72718 * 13 10 9 19 19 O 1.35910 * 120.47159 * 0.02562 * 18 13 10 20 20 C 1.42900 * 117.00151 * 179.97438 * 19 18 13 21 21 C 1.50696 * 109.47316 * 179.97438 * 20 19 18 22 22 C 1.38239 * 120.00032 * 269.72280 * 21 20 19 23 23 C 1.38233 * 119.99961 * 179.76524 * 22 21 20 24 24 C 1.38243 * 119.99916 * 0.51180 * 23 22 21 25 25 C 1.38236 * 119.99738 * 359.74408 * 24 23 22 26 26 C 1.38232 * 120.00129 * 359.97438 * 25 24 23 27 27 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 28 28 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 29 29 H 1.08004 * 119.55980 * 180.02562 * 15 14 13 30 30 H 1.08003 * 120.38993 * 180.02562 * 16 15 14 31 31 H 1.08000 * 120.81869 * 179.97438 * 17 16 15 32 32 H 1.09001 * 109.47280 * 299.99772 * 20 19 18 33 33 H 1.09002 * 109.47192 * 59.99462 * 20 19 18 34 34 H 1.08001 * 119.99593 * 0.02562 * 22 21 20 35 35 H 1.07994 * 120.00209 * 180.23275 * 23 22 21 36 36 H 1.08004 * 119.99913 * 179.72211 * 24 23 22 37 37 H 1.08005 * 119.99644 * 179.97438 * 25 24 23 38 38 H 1.08005 * 119.99710 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 16 2.1534 -3.8222 0.0081 11 8 1.1738 -4.8508 0.0477 12 8 3.1361 -3.7236 -1.0137 13 6 3.0296 -3.9107 1.5342 14 7 2.4546 -4.4600 2.5857 15 6 3.0717 -4.5486 3.7476 16 6 4.3564 -4.0637 3.9076 17 6 4.9979 -3.4785 2.8281 18 6 4.3194 -3.4067 1.6154 19 8 4.9099 -2.8457 0.5273 20 6 6.2397 -2.3499 0.6943 21 6 6.7265 -1.7692 -0.6083 22 6 7.3929 -2.5709 -1.5162 23 6 7.8352 -2.0394 -2.7132 24 6 7.6205 -0.7037 -2.9977 25 6 6.9588 0.0991 -2.0875 26 6 6.5113 -0.4338 -0.8930 27 1 -0.4850 0.8401 -0.0004 28 1 0.3555 -2.3880 0.0005 29 1 2.5667 -5.0062 4.5855 30 1 4.8545 -4.1408 4.8628 31 1 6.0012 -3.0908 2.9244 32 1 6.2452 -1.5761 1.4620 33 1 6.8965 -3.1658 0.9961 34 1 7.5642 -3.6134 -1.2921 35 1 8.3525 -2.6665 -3.4241 36 1 7.9700 -0.2874 -3.9310 37 1 6.7914 1.1428 -2.3096 38 1 5.9947 0.1937 -0.1817 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201895580.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:57 Heat of formation + Delta-G solvation = -64.693319 kcal Electronic energy + Delta-G solvation = -26804.860630 eV Core-core repulsion = 22932.114176 eV Total energy + Delta-G solvation = -3872.746454 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.72711 -40.22738 -39.06879 -37.85702 -36.61784 -36.45661 -33.38462 -33.34578 -32.81953 -31.80550 -31.31473 -27.66446 -26.41995 -25.20101 -24.15672 -23.51627 -22.20311 -20.51178 -20.01989 -19.49463 -18.73259 -18.32920 -18.01166 -17.49024 -17.11418 -16.43972 -16.20531 -16.09568 -15.97033 -15.66925 -15.36406 -15.24066 -14.61169 -14.45451 -14.28176 -13.80808 -13.78991 -13.58462 -13.15088 -13.11507 -12.97101 -12.92604 -12.75325 -12.44288 -12.28287 -12.24039 -12.03010 -11.90187 -11.86351 -11.78236 -10.96368 -10.64401 -10.16990 -9.82223 -9.78182 -9.71029 -8.30694 -5.86457 -0.41639 -0.14785 0.21702 0.25388 0.50108 1.41829 1.45736 1.56536 2.05448 2.24400 2.46043 2.68542 2.98120 2.99173 3.17730 3.31043 3.54122 3.78199 3.82263 3.89648 4.08251 4.10287 4.17102 4.23109 4.24359 4.29471 4.37560 4.61579 4.73149 4.81758 4.92855 5.04465 5.13340 5.14893 5.41068 5.53025 5.59443 5.61515 5.62004 6.05846 6.10413 6.72705 6.76141 6.97477 7.34223 8.88626 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.008764 B = 0.006407 C = 0.004735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3194.081174 B = 4369.469138 C = 5911.887403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.022 4.022 3 Si 0.976 3.024 4 H -0.247 1.247 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.299 4.299 8 H 0.109 0.891 9 N -0.971 5.971 10 S 2.669 3.331 11 O -1.011 7.011 12 O -0.968 6.968 13 C -0.500 4.500 14 N -0.401 5.401 15 C 0.025 3.975 16 C -0.065 4.065 17 C -0.184 4.184 18 C 0.155 3.845 19 O -0.298 6.298 20 C 0.085 3.915 21 C -0.112 4.112 22 C -0.105 4.105 23 C -0.131 4.131 24 C -0.113 4.113 25 C -0.136 4.136 26 C -0.113 4.113 27 H 0.271 0.729 28 H 0.404 0.596 29 H 0.197 0.803 30 H 0.198 0.802 31 H 0.186 0.814 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.135 0.865 35 H 0.149 0.851 36 H 0.150 0.850 37 H 0.139 0.861 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.238 -1.323 5.723 20.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.223 4.223 3 Si 0.799 3.201 4 H -0.170 1.170 5 H -0.205 1.205 6 H -0.203 1.203 7 C -0.434 4.434 8 H 0.126 0.874 9 N -0.724 5.724 10 S 2.758 3.242 11 O -1.001 7.001 12 O -0.957 6.957 13 C -0.717 4.717 14 N -0.112 5.112 15 C -0.139 4.139 16 C -0.084 4.084 17 C -0.211 4.211 18 C 0.103 3.897 19 O -0.209 6.209 20 C 0.011 3.989 21 C -0.112 4.112 22 C -0.123 4.123 23 C -0.148 4.148 24 C -0.131 4.131 25 C -0.154 4.154 26 C -0.131 4.131 27 H 0.080 0.920 28 H 0.238 0.762 29 H 0.214 0.786 30 H 0.215 0.785 31 H 0.203 0.797 32 H 0.110 0.890 33 H 0.120 0.880 34 H 0.153 0.847 35 H 0.166 0.834 36 H 0.167 0.833 37 H 0.157 0.843 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 18.454 -2.195 4.718 19.174 hybrid contribution 0.280 1.283 0.805 1.540 sum 18.734 -0.911 5.523 19.552 Atomic orbital electron populations 1.69827 1.07307 1.28446 1.51812 1.26048 0.96421 1.02335 0.97501 0.85125 0.79555 0.77590 0.77848 1.16975 1.20479 1.20280 1.19581 0.92386 0.83327 1.48104 0.87381 1.51415 1.16513 1.19438 1.84992 1.03296 0.72804 0.72533 0.75561 1.93401 1.60731 1.57782 1.88196 1.93520 1.61515 1.86822 1.53883 1.33164 1.04438 1.13560 1.20534 1.67677 1.35451 1.08785 0.99259 1.23688 0.94559 1.00445 0.95182 1.22780 0.94270 0.90876 1.00480 1.22291 1.03209 1.04170 0.91396 1.19835 0.91760 0.89398 0.88674 1.86531 1.31249 1.71025 1.32127 1.22089 0.80602 0.99728 0.96449 1.19576 1.00550 0.94331 0.96746 1.21326 0.97202 0.99820 0.93932 1.21486 1.00454 0.96035 0.96865 1.21573 0.97653 0.94067 0.99791 1.21444 0.98737 1.01294 0.93877 1.21319 0.98280 0.95220 0.98316 0.91968 0.76178 0.78583 0.78478 0.79691 0.88953 0.87982 0.84746 0.83362 0.83269 0.84297 0.86186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.51 13.06 21.65 0.28 -53.23 16 2 C -0.02 -1.20 5.50 84.86 0.47 -0.74 16 3 Si 0.98 41.68 29.55 68.60 2.03 43.70 16 4 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 5 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.30 -16.40 9.63 84.03 0.81 -15.59 16 8 H 0.11 5.72 6.92 -2.91 -0.02 5.70 16 9 N -0.97 -52.88 5.75 -54.26 -0.31 -53.19 16 10 S 2.67 135.43 5.69 -56.49 -0.32 135.10 16 11 O -1.01 -55.08 17.85 -128.00 -2.29 -57.37 16 12 O -0.97 -51.32 15.70 -119.40 -1.88 -53.20 16 13 C -0.50 -21.73 6.79 84.80 0.58 -21.15 16 14 N -0.40 -16.17 10.11 -192.91 -1.95 -18.12 16 15 C 0.02 0.69 11.18 84.69 0.95 1.64 16 16 C -0.06 -1.32 10.11 22.34 0.23 -1.10 16 17 C -0.18 -4.50 9.14 22.56 0.21 -4.29 16 18 C 0.16 5.64 6.65 22.60 0.15 5.79 16 19 O -0.30 -11.22 7.07 -71.69 -0.51 -11.72 16 20 C 0.09 2.23 4.89 71.23 0.35 2.58 16 21 C -0.11 -3.19 5.51 -19.87 -0.11 -3.30 16 22 C -0.10 -2.69 9.70 22.27 0.22 -2.47 16 23 C -0.13 -2.93 10.05 22.27 0.22 -2.71 16 24 C -0.11 -2.50 10.05 22.27 0.22 -2.27 16 25 C -0.14 -3.42 10.05 22.27 0.22 -3.20 16 26 C -0.11 -3.28 9.70 22.27 0.22 -3.07 16 27 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 28 H 0.40 22.75 8.02 -96.74 -0.78 21.98 16 29 H 0.20 3.78 8.06 -2.91 -0.02 3.75 16 30 H 0.20 1.74 8.06 -2.91 -0.02 1.72 16 31 H 0.19 2.81 6.45 -2.91 -0.02 2.79 16 32 H 0.09 1.98 7.63 -2.39 -0.02 1.96 16 33 H 0.10 1.94 7.65 -2.39 -0.02 1.92 16 34 H 0.13 2.96 8.06 -2.91 -0.02 2.94 16 35 H 0.15 2.44 8.06 -2.91 -0.02 2.41 16 36 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 37 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16 38 H 0.12 3.45 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -81.10 346.42 0.12 -80.98 By element: Atomic # 1 Polarization: 36.59 SS G_CDS: 0.33 Total: 36.93 kcal Atomic # 6 Polarization: -54.61 SS G_CDS: 4.72 Total: -49.88 kcal Atomic # 7 Polarization: -122.56 SS G_CDS: -1.98 Total: -124.54 kcal Atomic # 8 Polarization: -117.62 SS G_CDS: -4.67 Total: -122.29 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.70 kcal Atomic # 16 Polarization: 135.43 SS G_CDS: -0.32 Total: 135.10 kcal Total: -81.10 0.12 -80.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201895580.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.286 kcal (2) G-P(sol) polarization free energy of solvation -81.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds