Wall clock time and date at job start Tue Mar 31 2020 19:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31587 * 1 3 3 Si 1.86798 * 120.00156 * 2 1 4 4 H 1.48498 * 109.47126 * 270.00177 * 3 2 1 5 5 H 1.48496 * 109.47250 * 30.00417 * 3 2 1 6 6 H 1.48501 * 109.47053 * 150.00043 * 3 2 1 7 7 C 1.38625 * 119.99937 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00103 * 179.97438 * 7 2 1 9 9 O 1.34813 * 119.99599 * 359.97438 * 7 2 1 10 10 C 1.35797 * 116.99631 * 184.93869 * 9 7 2 11 11 C 1.38903 * 119.99624 * 185.88263 * 10 9 7 12 12 C 1.38009 * 120.00888 * 180.23002 * 11 10 9 13 13 C 1.38951 * 119.99201 * 359.49923 * 12 11 10 14 14 N 1.39782 * 120.00441 * 180.23363 * 13 12 11 15 15 S 1.65602 * 120.00080 * 133.95231 * 14 13 12 16 16 O 1.42105 * 106.40009 * 180.83602 * 15 14 13 17 17 O 1.42092 * 106.40128 * 313.75543 * 15 14 13 18 18 C 1.76198 * 107.21653 * 67.29915 * 15 14 13 19 19 C 1.38131 * 120.03387 * 242.86600 * 18 15 14 20 20 C 1.38264 * 120.07275 * 179.74885 * 19 18 15 21 21 C 1.38309 * 120.15180 * 0.55519 * 20 19 18 22 22 C 1.38089 * 120.06904 * 359.69868 * 21 20 19 23 23 C 1.38890 * 120.04049 * 63.14504 * 18 15 14 24 24 N 1.39673 * 120.07457 * 359.95593 * 23 18 15 25 25 C 1.38946 * 119.98943 * 0.24642 * 13 12 11 26 26 C 1.38021 * 119.99340 * 0.02562 * 25 13 12 27 27 H 0.96999 * 119.99359 * 359.97438 * 1 2 3 28 28 H 1.07998 * 119.99280 * 0.02562 * 11 10 9 29 29 H 1.07999 * 120.00594 * 179.77126 * 12 11 10 30 30 H 0.96997 * 119.99830 * 313.94917 * 14 13 12 31 31 H 1.07996 * 119.96289 * 0.02661 * 19 18 15 32 32 H 1.07996 * 119.92782 * 180.27773 * 20 19 18 33 33 H 1.07993 * 119.96818 * 179.72608 * 21 20 19 34 34 H 1.08005 * 120.03381 * 180.02562 * 22 21 20 35 35 H 0.97000 * 119.99689 * 4.55925 * 24 23 18 36 36 H 0.97001 * 119.99889 * 184.55960 * 24 23 18 37 37 H 1.07995 * 120.00947 * 180.02562 * 25 13 12 38 38 H 1.07999 * 119.99347 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 2.4974 2.0464 -1.4001 5 1 1.4475 2.6526 0.7001 6 1 3.5475 1.4401 0.7000 7 6 2.0090 -1.2005 -0.0005 8 1 3.0890 -1.2006 -0.0010 9 8 1.3348 -2.3680 -0.0005 10 6 2.0706 -3.5047 0.1031 11 6 1.4541 -4.7439 -0.0133 12 6 2.2008 -5.8994 0.0967 13 6 3.5711 -5.8228 0.3136 14 7 4.3284 -6.9928 0.4201 15 16 5.7599 -7.1303 -0.4010 16 8 6.2695 -8.4235 -0.1053 17 8 5.5084 -6.6780 -1.7243 18 6 6.8841 -5.9771 0.3139 19 6 7.3869 -4.9395 -0.4467 20 6 8.2650 -4.0311 0.1149 21 6 8.6520 -4.1645 1.4361 22 6 8.1571 -5.2026 2.2005 23 6 7.2701 -6.1138 1.6410 24 7 6.7675 -7.1648 2.4115 25 6 4.1885 -4.5830 0.4247 26 6 3.4403 -3.4278 0.3202 27 1 -0.4849 0.8401 0.0004 28 1 0.3897 -4.8033 -0.1866 29 1 1.7208 -6.8629 0.0099 30 1 4.0155 -7.7242 0.9751 31 1 7.0902 -4.8350 -1.4798 32 1 8.6532 -3.2180 -0.4806 33 1 9.3414 -3.4559 1.8705 34 1 8.4594 -5.3061 3.2322 35 1 6.2007 -7.8377 2.0030 36 1 6.9851 -7.2217 3.3550 37 1 5.2536 -4.5231 0.5928 38 1 3.9202 -2.4641 0.4061 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212610414.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:50 Heat of formation + Delta-G solvation = -65.599718 kcal Electronic energy + Delta-G solvation = -26298.267444 eV Core-core repulsion = 22425.481686 eV Total energy + Delta-G solvation = -3872.785758 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.91694 -40.39507 -38.89674 -38.44285 -37.11309 -35.76224 -35.28297 -34.08272 -32.41430 -31.74546 -29.71075 -29.17358 -27.21526 -24.49641 -23.77219 -23.30146 -23.05506 -20.69496 -19.98066 -19.34405 -19.16237 -18.51551 -18.29037 -17.78091 -17.64632 -16.38991 -16.27924 -16.18699 -15.70343 -15.52214 -15.37654 -15.19868 -14.88391 -14.83153 -14.51810 -14.20195 -13.87163 -13.60016 -13.52919 -13.31458 -13.23859 -13.20306 -12.95919 -12.78286 -12.45133 -12.32189 -12.10580 -11.89573 -11.79713 -11.50262 -11.08901 -10.68780 -10.27825 -9.89434 -8.81217 -8.76573 -8.44787 -6.11617 -0.79043 -0.06826 0.48415 0.54267 0.57901 1.38150 1.46617 1.54990 1.80947 2.20016 2.45817 2.65758 2.73141 2.80174 3.15124 3.26811 3.50342 3.80501 3.95517 4.02131 4.09507 4.21475 4.39965 4.44359 4.47159 4.61539 4.65962 4.88471 4.97817 4.99978 5.09835 5.20255 5.29896 5.39180 5.51645 5.53338 5.65488 5.77719 5.90425 6.03310 6.20095 6.23143 6.63840 7.00070 7.78578 8.77984 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.013976 B = 0.003904 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.886503 B = 7171.246677 C = 8417.346108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.020 4.020 3 Si 1.015 2.985 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.251 1.251 7 C -0.412 4.412 8 H 0.102 0.898 9 O -0.225 6.225 10 C 0.109 3.891 11 C -0.178 4.178 12 C -0.074 4.074 13 C 0.075 3.925 14 N -1.038 6.038 15 S 2.706 3.294 16 O -0.975 6.975 17 O -0.984 6.984 18 C -0.767 4.767 19 C -0.002 4.002 20 C -0.200 4.200 21 C -0.017 4.017 22 C -0.216 4.216 23 C 0.304 3.696 24 N -0.861 5.861 25 C -0.108 4.108 26 C -0.213 4.213 27 H 0.272 0.728 28 H 0.128 0.872 29 H 0.161 0.839 30 H 0.433 0.567 31 H 0.134 0.866 32 H 0.147 0.853 33 H 0.162 0.838 34 H 0.158 0.842 35 H 0.399 0.601 36 H 0.422 0.578 37 H 0.142 0.858 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.278 -12.010 6.797 22.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.218 4.218 3 Si 0.834 3.166 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.174 1.174 7 C -0.488 4.488 8 H 0.120 0.880 9 O -0.132 6.132 10 C 0.058 3.942 11 C -0.198 4.198 12 C -0.095 4.095 13 C -0.020 4.020 14 N -0.792 5.792 15 S 2.800 3.200 16 O -0.965 6.965 17 O -0.974 6.974 18 C -0.863 4.863 19 C -0.022 4.022 20 C -0.221 4.221 21 C -0.035 4.035 22 C -0.239 4.239 23 C 0.193 3.807 24 N -0.401 5.401 25 C -0.129 4.129 26 C -0.233 4.233 27 H 0.081 0.919 28 H 0.146 0.854 29 H 0.179 0.821 30 H 0.273 0.727 31 H 0.151 0.849 32 H 0.165 0.835 33 H 0.179 0.821 34 H 0.176 0.824 35 H 0.229 0.771 36 H 0.255 0.745 37 H 0.159 0.841 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 17.108 -12.366 5.991 21.943 hybrid contribution -0.159 0.758 0.670 1.024 sum 16.949 -11.607 6.661 21.596 Atomic orbital electron populations 1.70190 1.07958 1.28770 1.48725 1.26532 0.96805 1.02619 0.95864 0.84633 0.77954 0.74752 0.79212 1.19006 1.19677 1.17444 1.21799 0.92525 0.81407 1.53050 0.88037 1.83966 1.35566 1.12449 1.81194 1.19948 0.91413 0.88167 0.94650 1.20378 1.00767 0.89490 1.09161 1.20950 0.92297 0.98329 0.97904 1.16866 0.91602 0.84508 1.09012 1.52740 1.37884 1.23403 1.65165 1.01259 0.72586 0.73106 0.73069 1.93552 1.79235 1.38432 1.85260 1.93548 1.84675 1.82819 1.36385 1.29844 1.28093 1.22686 1.05692 1.20865 0.91932 0.90304 0.99087 1.21360 1.02063 1.01550 0.97080 1.21645 0.94267 0.94751 0.92887 1.21101 1.02386 0.97942 1.02477 1.17322 0.88570 0.86994 0.87835 1.42928 1.56540 1.27039 1.13609 1.21249 1.00797 0.90938 0.99922 1.21037 0.93414 0.99297 1.09540 0.91860 0.85431 0.82145 0.72742 0.84863 0.83522 0.82053 0.82423 0.77083 0.74515 0.84061 0.85566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.30 13.67 21.61 0.30 -55.01 16 2 C -0.02 -1.13 5.49 84.82 0.47 -0.67 16 3 Si 1.02 41.87 29.55 68.60 2.03 43.90 16 4 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 5 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 6 H -0.25 -9.51 7.11 99.48 0.71 -8.81 16 7 C -0.41 -23.38 9.44 67.91 0.64 -22.74 16 8 H 0.10 5.28 5.28 -2.91 -0.02 5.26 16 9 O -0.23 -13.18 9.76 -23.09 -0.23 -13.40 16 10 C 0.11 5.28 6.65 22.59 0.15 5.43 16 11 C -0.18 -7.20 9.98 22.37 0.22 -6.98 16 12 C -0.07 -2.37 9.96 22.39 0.22 -2.15 16 13 C 0.08 2.37 6.01 38.21 0.23 2.60 16 14 N -1.04 -24.80 5.40 -51.26 -0.28 -25.08 16 15 S 2.71 73.68 4.76 -56.49 -0.27 73.41 16 16 O -0.98 -27.10 16.36 -128.00 -2.09 -29.19 16 17 O -0.98 -34.54 16.65 -128.00 -2.13 -36.67 16 18 C -0.77 -19.16 3.67 22.40 0.08 -19.08 16 19 C 0.00 -0.05 8.53 22.25 0.19 0.14 16 20 C -0.20 -3.98 10.04 22.29 0.22 -3.75 16 21 C -0.02 -0.27 10.04 22.25 0.22 -0.04 16 22 C -0.22 -3.57 9.90 22.40 0.22 -3.35 16 23 C 0.30 6.19 6.72 38.21 0.26 6.45 16 24 N -0.86 -13.19 8.94 -51.37 -0.46 -13.65 16 25 C -0.11 -3.83 9.34 22.39 0.21 -3.62 16 26 C -0.21 -9.13 9.13 22.38 0.20 -8.93 16 27 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 28 H 0.13 4.96 8.06 -2.91 -0.02 4.94 16 29 H 0.16 3.82 8.06 -2.91 -0.02 3.79 16 30 H 0.43 7.08 8.95 -96.75 -0.87 6.21 16 31 H 0.13 3.45 7.34 -2.91 -0.02 3.43 16 32 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 33 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 34 H 0.16 1.61 8.06 -2.91 -0.02 1.58 16 35 H 0.40 6.29 5.90 -92.71 -0.55 5.74 16 36 H 0.42 3.76 8.85 -92.71 -0.82 2.94 16 37 H 0.14 4.38 4.39 -2.91 -0.01 4.37 16 38 H 0.13 5.47 5.70 -2.91 -0.02 5.45 16 Total: -1.00 -78.67 336.32 -0.65 -79.33 By element: Atomic # 1 Polarization: 34.12 SS G_CDS: -1.07 Total: 33.05 kcal Atomic # 6 Polarization: -60.23 SS G_CDS: 3.54 Total: -56.69 kcal Atomic # 7 Polarization: -93.29 SS G_CDS: -0.44 Total: -93.73 kcal Atomic # 8 Polarization: -74.81 SS G_CDS: -4.45 Total: -79.26 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Atomic # 16 Polarization: 73.68 SS G_CDS: -0.27 Total: 73.41 kcal Total: -78.67 -0.65 -79.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212610414.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.728 kcal (2) G-P(sol) polarization free energy of solvation -78.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds