Wall clock time and date at job start Tue Mar 31 2020 18:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99894 * 2 1 4 4 H 1.48502 * 109.47482 * 240.00031 * 3 2 1 5 5 H 1.48500 * 109.47087 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47206 * 119.99774 * 3 2 1 7 7 C 1.37876 * 120.00289 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99895 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00012 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.47230 * 180.02562 * 9 7 2 11 11 O 1.42901 * 109.46645 * 60.00195 * 9 7 2 12 12 C 1.36165 * 116.99915 * 90.00364 * 11 9 7 13 13 C 1.38923 * 120.00151 * 89.99479 * 12 11 9 14 14 O 1.36161 * 119.99651 * 359.97438 * 13 12 11 15 15 C 1.38921 * 119.99778 * 179.97438 * 13 12 11 16 16 O 1.36160 * 119.99649 * 179.97438 * 15 13 12 17 17 C 1.38923 * 120.00003 * 0.23648 * 15 13 12 18 18 O 1.36163 * 119.99516 * 179.74637 * 17 15 13 19 19 C 1.38922 * 120.00247 * 359.51205 * 17 15 13 20 20 O 1.36155 * 120.00263 * 180.21503 * 19 17 15 21 21 C 1.38923 * 119.99749 * 0.48162 * 19 17 15 22 22 O 1.36162 * 120.00283 * 179.74385 * 21 19 17 23 23 C 1.50697 * 109.46975 * 300.00415 * 9 7 2 24 24 C 1.38236 * 120.00095 * 84.72812 * 23 9 7 25 25 C 1.38238 * 119.99758 * 179.78818 * 24 23 9 26 26 C 1.38234 * 120.00188 * 0.43667 * 25 24 23 27 27 C 1.38235 * 119.99889 * 359.81385 * 26 25 24 28 28 C 1.38237 * 120.00126 * 359.97438 * 27 26 25 29 29 H 0.97001 * 120.00186 * 0.02562 * 1 2 3 30 30 H 0.96702 * 113.99815 * 270.01325 * 14 13 12 31 31 H 0.96700 * 114.00140 * 90.00292 * 16 15 13 32 32 H 0.96702 * 114.00514 * 90.00208 * 18 17 15 33 33 H 0.96696 * 114.00209 * 270.27047 * 20 19 17 34 34 H 0.96701 * 114.00128 * 270.03539 * 22 21 19 35 35 H 1.07998 * 120.00035 * 359.97438 * 24 23 9 36 36 H 1.08001 * 119.99563 * 180.27096 * 25 24 23 37 37 H 1.07993 * 119.99945 * 179.84096 * 26 25 24 38 38 H 1.08000 * 120.00071 * 179.97438 * 27 26 25 39 39 H 1.07995 * 119.99925 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 1.9594 -3.3276 -0.0005 11 8 0.4292 -2.5746 -1.1671 12 6 0.9833 -3.1324 -2.2787 13 6 0.8727 -4.4997 -2.4986 14 8 0.2106 -5.2820 -1.6022 15 6 1.4377 -5.0687 -3.6331 16 8 1.3297 -6.4088 -3.8483 17 6 2.1175 -4.2712 -4.5451 18 8 2.6756 -4.8298 -5.6544 19 6 2.2236 -2.9032 -4.3279 20 8 2.8861 -2.1209 -5.2240 21 6 1.6585 -2.3341 -3.1935 22 8 1.7670 -0.9940 -2.9779 23 6 0.3851 -2.5793 1.2302 24 6 -0.8704 -2.0008 1.2308 25 6 -1.6664 -2.0780 2.3583 26 6 -1.2034 -2.7260 3.4882 27 6 0.0541 -3.3000 3.4893 28 6 0.8485 -3.2265 2.3604 29 1 -0.4850 0.8400 -0.0004 30 1 0.7730 -5.6397 -0.9016 31 1 0.5447 -6.6643 -4.3519 32 1 2.0852 -4.8590 -6.4197 33 1 3.8310 -2.0272 -5.0413 34 1 2.5522 -0.7389 -2.4744 35 1 -1.2305 -1.4910 0.3494 36 1 -2.6490 -1.6298 2.3572 37 1 -1.8243 -2.7841 4.3699 38 1 0.4160 -3.8058 4.3722 39 1 1.8307 -3.6753 2.3612 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226467688.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:06 Heat of formation + Delta-G solvation = -176.865089 kcal Electronic energy + Delta-G solvation = -29890.627444 eV Core-core repulsion = 25537.971235 eV Total energy + Delta-G solvation = -4352.656209 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.102 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.56142 -38.62177 -38.15870 -37.81125 -36.43984 -36.29422 -35.56109 -33.92073 -32.87099 -30.66000 -29.72980 -27.81892 -27.71458 -26.79406 -23.39730 -22.35903 -22.13200 -21.40247 -20.31096 -19.08563 -18.67934 -17.80146 -17.43756 -17.31028 -16.66308 -16.44137 -16.01874 -15.61458 -14.92752 -14.89358 -14.72474 -14.44708 -14.17139 -13.80113 -13.53754 -13.44193 -13.14060 -12.81522 -12.36431 -11.89549 -11.84528 -11.72117 -11.59502 -11.29996 -11.10686 -10.86840 -10.77286 -10.51136 -10.37461 -10.27437 -10.05376 -9.59681 -9.54433 -8.93381 -8.46081 -8.08503 -7.96736 -7.82126 -7.54612 -6.13304 -4.49775 1.16144 1.22389 2.38292 2.54825 3.13519 3.21390 3.23072 3.35417 3.83114 4.06920 4.16800 4.57920 4.60774 4.74811 4.82902 4.94006 5.08899 5.69930 5.75304 5.85092 5.88167 5.97591 6.03307 6.05059 6.19639 6.40462 6.41221 6.56283 6.69498 6.77880 7.00291 7.21368 7.38201 7.41380 7.46617 7.65209 7.69710 7.76906 7.84494 7.92195 7.98863 8.19815 8.26492 8.45526 8.84664 9.26061 10.70197 Molecular weight = 334.10amu Principal moments of inertia in cm(-1) A = 0.011860 B = 0.005489 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.321647 B = 5099.860524 C = 6965.221743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.097 3.903 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.277 1.277 7 C -0.557 4.557 8 H 0.064 0.936 9 C 0.253 3.747 10 H 0.017 0.983 11 O -0.299 6.299 12 C 0.114 3.886 13 C 0.061 3.939 14 O -0.474 6.474 15 C 0.065 3.935 16 O -0.480 6.480 17 C 0.053 3.947 18 O -0.480 6.480 19 C 0.062 3.938 20 O -0.479 6.479 21 C 0.099 3.901 22 O -0.458 6.458 23 C -0.042 4.042 24 C -0.043 4.043 25 C -0.152 4.152 26 C -0.143 4.143 27 C -0.148 4.148 28 C -0.128 4.128 29 H 0.267 0.733 30 H 0.385 0.615 31 H 0.385 0.615 32 H 0.383 0.617 33 H 0.385 0.615 34 H 0.391 0.609 35 H 0.164 0.836 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.284 -6.979 -4.331 8.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.113 4.113 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.203 1.203 7 C -0.593 4.593 8 H 0.082 0.918 9 C 0.201 3.799 10 H 0.035 0.965 11 O -0.216 6.216 12 C 0.066 3.934 13 C 0.014 3.986 14 O -0.283 6.283 15 C 0.019 3.981 16 O -0.289 6.289 17 C 0.007 3.993 18 O -0.288 6.288 19 C 0.015 3.985 20 O -0.288 6.288 21 C 0.051 3.949 22 O -0.269 6.269 23 C -0.043 4.043 24 C -0.062 4.062 25 C -0.170 4.170 26 C -0.161 4.161 27 C -0.167 4.167 28 C -0.146 4.146 29 H 0.078 0.922 30 H 0.241 0.759 31 H 0.240 0.760 32 H 0.238 0.762 33 H 0.240 0.760 34 H 0.249 0.751 35 H 0.181 0.819 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.397 -6.633 -4.527 8.151 hybrid contribution 1.158 0.906 0.446 1.537 sum 2.555 -5.727 -4.081 7.482 Atomic orbital electron populations 1.69771 1.06005 1.26711 1.43625 1.24941 0.94701 0.99072 0.92570 0.86695 0.79831 0.82963 0.78710 1.19707 1.20875 1.20265 1.21326 0.92829 0.90517 1.54629 0.91810 1.18836 0.86571 0.95058 0.79432 0.96496 1.86409 1.39232 1.78721 1.17231 1.19245 0.94404 0.88908 0.90844 1.18902 0.97958 0.89118 0.92591 1.84866 1.36390 1.66503 1.40529 1.18648 0.99974 0.83834 0.95659 1.84869 1.48605 1.17934 1.77489 1.18516 1.01450 0.88971 0.90388 1.84884 1.41559 1.81934 1.20469 1.18814 1.00101 0.87711 0.91828 1.84875 1.25311 1.69103 1.49515 1.18859 0.98012 0.85747 0.92235 1.84899 1.49654 1.15833 1.76546 1.19806 0.94434 0.95070 0.94964 1.21863 0.92680 0.92303 0.99333 1.21163 0.99688 1.01507 0.94652 1.20845 0.96377 1.01025 0.97876 1.20696 0.95313 1.02977 0.97672 1.20739 0.98923 1.01184 0.93755 0.92197 0.75921 0.76028 0.76230 0.75976 0.75088 0.81858 0.87922 0.88175 0.87906 0.87826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -20.76 8.50 55.43 0.47 -20.29 16 2 C 0.10 2.32 5.00 -17.82 -0.09 2.23 16 3 Si 0.89 19.07 29.54 -169.99 -5.02 14.05 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 7 C -0.56 -13.12 7.00 -34.44 -0.24 -13.36 16 8 H 0.06 1.46 7.81 -52.49 -0.41 1.05 16 9 C 0.25 5.72 2.65 -29.03 -0.08 5.64 16 10 H 0.02 0.36 7.82 -51.93 -0.41 -0.04 16 11 O -0.30 -6.92 7.80 -45.62 -0.36 -7.28 16 12 C 0.11 2.32 5.57 -39.07 -0.22 2.10 16 13 C 0.06 1.10 6.72 -39.07 -0.26 0.84 16 14 O -0.47 -8.20 13.06 -45.61 -0.60 -8.79 16 15 C 0.06 1.04 6.72 -39.07 -0.26 0.78 16 16 O -0.48 -6.70 13.06 -45.61 -0.60 -7.29 16 17 C 0.05 0.83 6.72 -39.07 -0.26 0.57 16 18 O -0.48 -6.50 13.06 -45.62 -0.60 -7.10 16 19 C 0.06 1.04 6.72 -39.07 -0.26 0.78 16 20 O -0.48 -7.24 13.06 -45.59 -0.60 -7.84 16 21 C 0.10 1.92 6.72 -39.07 -0.26 1.66 16 22 O -0.46 -9.49 12.17 -45.61 -0.56 -10.05 16 23 C -0.04 -0.95 4.80 -104.62 -0.50 -1.45 16 24 C -0.04 -0.98 7.46 -39.58 -0.30 -1.28 16 25 C -0.15 -3.08 10.05 -39.58 -0.40 -3.48 16 26 C -0.14 -2.66 10.05 -39.58 -0.40 -3.05 16 27 C -0.15 -2.74 10.05 -39.58 -0.40 -3.14 16 28 C -0.13 -2.57 9.68 -39.58 -0.38 -2.95 16 29 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 30 H 0.39 5.34 9.07 45.56 0.41 5.76 16 31 H 0.38 3.61 9.07 45.56 0.41 4.02 16 32 H 0.38 3.46 9.07 45.56 0.41 3.88 16 33 H 0.39 4.12 9.07 45.56 0.41 4.53 16 34 H 0.39 7.37 7.82 45.56 0.36 7.72 16 35 H 0.16 4.10 5.50 -52.49 -0.29 3.81 16 36 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 37 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 38 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 39 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 343.26 15.07 5.17 5.17 Total: -1.00 -31.07 343.26 -6.91 -37.98 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: 0.08 Total: 25.55 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: -4.31 Total: -14.11 kcal Atomic # 7 Polarization: -20.76 SS G_CDS: 0.47 Total: -20.29 kcal Atomic # 8 Polarization: -45.05 SS G_CDS: -3.29 Total: -48.34 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.02 Total: 14.05 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.07 -6.91 -37.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226467688.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.888 kcal (2) G-P(sol) polarization free energy of solvation -31.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds