Wall clock time and date at job start Tue Mar 31 2020 18:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99894 * 2 1 4 4 H 1.48502 * 109.47482 * 240.00031 * 3 2 1 5 5 H 1.48500 * 109.47087 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47206 * 119.99774 * 3 2 1 7 7 C 1.37876 * 120.00289 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99895 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00012 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.47230 * 180.02562 * 9 7 2 11 11 O 1.42901 * 109.46645 * 60.00195 * 9 7 2 12 12 C 1.36165 * 116.99915 * 90.00364 * 11 9 7 13 13 C 1.38923 * 120.00151 * 89.99479 * 12 11 9 14 14 O 1.36161 * 119.99651 * 359.97438 * 13 12 11 15 15 C 1.38921 * 119.99778 * 179.97438 * 13 12 11 16 16 O 1.36160 * 119.99649 * 179.97438 * 15 13 12 17 17 C 1.38923 * 120.00003 * 0.23648 * 15 13 12 18 18 O 1.36163 * 119.99516 * 179.74637 * 17 15 13 19 19 C 1.38922 * 120.00247 * 359.51205 * 17 15 13 20 20 O 1.36155 * 120.00263 * 180.21503 * 19 17 15 21 21 C 1.38923 * 119.99749 * 0.48162 * 19 17 15 22 22 O 1.36162 * 120.00283 * 179.74385 * 21 19 17 23 23 C 1.50697 * 109.46975 * 300.00415 * 9 7 2 24 24 C 1.38236 * 120.00095 * 84.72812 * 23 9 7 25 25 C 1.38238 * 119.99758 * 179.78818 * 24 23 9 26 26 C 1.38234 * 120.00188 * 0.43667 * 25 24 23 27 27 C 1.38235 * 119.99889 * 359.81385 * 26 25 24 28 28 C 1.38237 * 120.00126 * 359.97438 * 27 26 25 29 29 H 0.97001 * 120.00186 * 0.02562 * 1 2 3 30 30 H 0.96702 * 113.99815 * 270.01325 * 14 13 12 31 31 H 0.96700 * 114.00140 * 90.00292 * 16 15 13 32 32 H 0.96702 * 114.00514 * 90.00208 * 18 17 15 33 33 H 0.96696 * 114.00209 * 270.27047 * 20 19 17 34 34 H 0.96701 * 114.00128 * 270.03539 * 22 21 19 35 35 H 1.07998 * 120.00035 * 359.97438 * 24 23 9 36 36 H 1.08001 * 119.99563 * 180.27096 * 25 24 23 37 37 H 1.07993 * 119.99945 * 179.84096 * 26 25 24 38 38 H 1.08000 * 120.00071 * 179.97438 * 27 26 25 39 39 H 1.07995 * 119.99925 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 1.9594 -3.3276 -0.0005 11 8 0.4292 -2.5746 -1.1671 12 6 0.9833 -3.1324 -2.2787 13 6 0.8727 -4.4997 -2.4986 14 8 0.2106 -5.2820 -1.6022 15 6 1.4377 -5.0687 -3.6331 16 8 1.3297 -6.4088 -3.8483 17 6 2.1175 -4.2712 -4.5451 18 8 2.6756 -4.8298 -5.6544 19 6 2.2236 -2.9032 -4.3279 20 8 2.8861 -2.1209 -5.2240 21 6 1.6585 -2.3341 -3.1935 22 8 1.7670 -0.9940 -2.9779 23 6 0.3851 -2.5793 1.2302 24 6 -0.8704 -2.0008 1.2308 25 6 -1.6664 -2.0780 2.3583 26 6 -1.2034 -2.7260 3.4882 27 6 0.0541 -3.3000 3.4893 28 6 0.8485 -3.2265 2.3604 29 1 -0.4850 0.8400 -0.0004 30 1 0.7730 -5.6397 -0.9016 31 1 0.5447 -6.6643 -4.3519 32 1 2.0852 -4.8590 -6.4197 33 1 3.8310 -2.0272 -5.0413 34 1 2.5522 -0.7389 -2.4744 35 1 -1.2305 -1.4910 0.3494 36 1 -2.6490 -1.6298 2.3572 37 1 -1.8243 -2.7841 4.3699 38 1 0.4160 -3.8058 4.3722 39 1 1.8307 -3.6753 2.3612 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226467688.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:05 Heat of formation + Delta-G solvation = -202.712413 kcal Electronic energy + Delta-G solvation = -29891.748268 eV Core-core repulsion = 25537.971235 eV Total energy + Delta-G solvation = -4353.777033 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.89690 -40.12040 -39.45020 -39.21563 -37.78254 -37.59879 -36.91844 -35.37527 -34.49742 -32.26969 -31.28397 -29.25830 -29.05710 -28.42920 -25.05100 -23.69730 -23.55048 -22.91764 -21.89724 -20.38717 -19.99990 -19.11380 -18.87767 -18.63808 -18.12519 -17.83186 -17.55371 -17.11814 -16.62046 -16.33693 -15.90708 -15.77423 -15.67298 -15.17232 -15.03289 -14.90837 -14.67062 -14.37718 -13.91453 -13.45815 -13.20751 -13.04955 -13.01084 -12.89970 -12.77256 -12.44092 -12.28800 -11.97855 -11.91633 -11.63088 -11.56202 -11.17572 -11.00187 -10.70044 -10.06018 -9.45184 -9.40518 -9.32219 -9.13399 -7.90603 -6.32900 -0.15969 -0.10835 0.82206 0.99926 1.43124 1.45923 1.50361 2.02811 2.40177 2.55093 2.84008 3.15056 3.32588 3.35798 3.39550 3.44294 3.48320 4.31127 4.34373 4.39490 4.57188 4.61322 4.63732 4.69844 4.73105 4.82704 5.05204 5.17766 5.20199 5.25746 5.46020 5.62221 5.69337 5.87810 6.01750 6.14381 6.33117 6.43146 6.52548 6.58996 6.59863 6.70043 6.82697 6.91904 7.24282 7.47443 8.89275 Molecular weight = 334.10amu Principal moments of inertia in cm(-1) A = 0.011860 B = 0.005489 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.321647 B = 5099.860524 C = 6965.221743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.064 3.936 3 Si 0.936 3.064 4 H -0.259 1.259 5 H -0.294 1.294 6 H -0.279 1.279 7 C -0.564 4.564 8 H 0.063 0.937 9 C 0.256 3.744 10 H 0.017 0.983 11 O -0.320 6.320 12 C 0.078 3.922 13 C 0.059 3.941 14 O -0.483 6.483 15 C 0.079 3.921 16 O -0.481 6.481 17 C 0.070 3.930 18 O -0.479 6.479 19 C 0.071 3.929 20 O -0.483 6.483 21 C 0.077 3.923 22 O -0.476 6.476 23 C -0.066 4.066 24 C -0.066 4.066 25 C -0.162 4.162 26 C -0.140 4.140 27 C -0.143 4.143 28 C -0.138 4.138 29 H 0.259 0.741 30 H 0.398 0.602 31 H 0.408 0.592 32 H 0.407 0.593 33 H 0.406 0.594 34 H 0.392 0.608 35 H 0.134 0.866 36 H 0.115 0.885 37 H 0.136 0.864 38 H 0.140 0.860 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.129 -8.574 -4.325 10.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.143 4.143 3 Si 0.763 3.237 4 H -0.183 1.183 5 H -0.220 1.220 6 H -0.205 1.205 7 C -0.600 4.600 8 H 0.081 0.919 9 C 0.203 3.797 10 H 0.035 0.965 11 O -0.238 6.238 12 C 0.032 3.968 13 C 0.012 3.988 14 O -0.294 6.294 15 C 0.032 3.968 16 O -0.293 6.293 17 C 0.024 3.976 18 O -0.291 6.291 19 C 0.024 3.976 20 O -0.295 6.295 21 C 0.030 3.970 22 O -0.287 6.287 23 C -0.067 4.067 24 C -0.085 4.085 25 C -0.181 4.181 26 C -0.158 4.158 27 C -0.161 4.161 28 C -0.156 4.156 29 H 0.069 0.931 30 H 0.256 0.744 31 H 0.267 0.733 32 H 0.266 0.734 33 H 0.264 0.736 34 H 0.250 0.750 35 H 0.151 0.849 36 H 0.134 0.866 37 H 0.153 0.847 38 H 0.157 0.843 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.253 -8.257 -4.559 9.697 hybrid contribution 0.918 1.224 0.336 1.566 sum 3.171 -7.033 -4.223 8.795 Atomic orbital electron populations 1.69991 1.06904 1.26306 1.45147 1.25438 0.95115 1.01133 0.92569 0.85984 0.78734 0.80102 0.78923 1.18312 1.21996 1.20522 1.21487 0.92828 0.91277 1.54387 0.91887 1.18771 0.86643 0.94465 0.79818 0.96493 1.86355 1.39930 1.79450 1.18018 1.19570 0.96359 0.90196 0.90709 1.18908 0.98110 0.88380 0.93395 1.84817 1.37204 1.66319 1.41078 1.18504 0.98947 0.84619 0.94719 1.84816 1.50072 1.16404 1.77984 1.18389 1.00074 0.88292 0.90886 1.84831 1.42226 1.81374 1.20672 1.18708 0.99711 0.88262 0.90913 1.84818 1.26978 1.68902 1.48808 1.19048 0.99303 0.85222 0.93437 1.84873 1.50110 1.17058 1.76681 1.19974 0.94611 0.96293 0.95801 1.21645 0.93735 0.93687 0.99440 1.21370 1.00121 1.01904 0.94664 1.21233 0.96831 0.99519 0.98185 1.21130 0.94860 1.01978 0.98139 1.21007 0.99935 1.00983 0.93641 0.93111 0.74433 0.73333 0.73423 0.73587 0.74982 0.84905 0.86650 0.84657 0.84259 0.86300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -44.58 8.50 21.45 0.18 -44.39 16 2 C 0.06 3.17 5.00 84.65 0.42 3.60 16 3 Si 0.94 39.97 29.54 68.60 2.03 41.99 16 4 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 6 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.56 -27.32 7.00 25.60 0.18 -27.14 16 8 H 0.06 2.95 7.81 -2.91 -0.02 2.93 16 9 C 0.26 11.92 2.65 29.10 0.08 12.00 16 10 H 0.02 0.75 7.82 -2.39 -0.02 0.74 16 11 O -0.32 -15.47 7.80 -71.18 -0.56 -16.02 16 12 C 0.08 3.28 5.57 22.60 0.13 3.41 16 13 C 0.06 2.10 6.72 22.60 0.15 2.25 16 14 O -0.48 -16.64 13.06 -71.14 -0.93 -17.57 16 15 C 0.08 2.38 6.72 22.60 0.15 2.53 16 16 O -0.48 -12.04 13.06 -71.13 -0.93 -12.97 16 17 C 0.07 2.05 6.72 22.60 0.15 2.20 16 18 O -0.48 -11.33 13.06 -71.17 -0.93 -12.26 16 19 C 0.07 2.30 6.72 22.60 0.15 2.46 16 20 O -0.48 -13.78 13.06 -71.07 -0.93 -14.71 16 21 C 0.08 3.03 6.72 22.60 0.15 3.18 16 22 O -0.48 -20.33 12.17 -71.15 -0.87 -21.19 16 23 C -0.07 -3.03 4.80 -19.87 -0.10 -3.13 16 24 C -0.07 -3.12 7.46 22.27 0.17 -2.95 16 25 C -0.16 -6.57 10.05 22.27 0.22 -6.34 16 26 C -0.14 -4.87 10.05 22.27 0.22 -4.65 16 27 C -0.14 -4.92 10.05 22.27 0.22 -4.70 16 28 C -0.14 -5.42 9.68 22.27 0.22 -5.20 16 29 H 0.26 13.39 8.31 -92.71 -0.77 12.62 16 30 H 0.40 10.98 9.07 -74.06 -0.67 10.30 16 31 H 0.41 6.32 9.07 -74.06 -0.67 5.65 16 32 H 0.41 5.78 9.07 -74.06 -0.67 5.11 16 33 H 0.41 7.88 9.07 -74.06 -0.67 7.21 16 34 H 0.39 15.36 7.82 -74.06 -0.58 14.78 16 35 H 0.13 7.10 5.50 -2.91 -0.02 7.08 16 36 H 0.12 4.21 8.06 -2.91 -0.02 4.19 16 37 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 38 H 0.14 3.74 8.06 -2.91 -0.02 3.72 16 39 H 0.12 4.19 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -68.01 343.26 -2.47 -70.49 By element: Atomic # 1 Polarization: 51.18 SS G_CDS: -2.07 Total: 49.11 kcal Atomic # 6 Polarization: -25.00 SS G_CDS: 2.52 Total: -22.48 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: 0.18 Total: -44.39 kcal Atomic # 8 Polarization: -89.58 SS G_CDS: -5.14 Total: -94.72 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 2.03 Total: 41.99 kcal Total: -68.01 -2.47 -70.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226467688.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.227 kcal (2) G-P(sol) polarization free energy of solvation -68.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds