Wall clock time and date at job start Tue Mar 31 2020 18:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46499 * 109.46966 * 95.78672 * 3 2 1 5 5 C 1.46750 * 124.33908 * 90.00301 * 4 3 2 6 6 C 1.54272 * 105.52171 * 197.24957 * 5 4 3 7 7 F 1.39903 * 113.76942 * 96.21100 * 6 5 4 8 8 C 1.53462 * 109.56954 * 223.85044 * 6 5 4 9 9 N 1.46608 * 108.10956 * 92.47716 * 8 6 5 10 10 S 1.65603 * 125.31800 * 178.68614 * 9 8 6 11 11 O 1.42103 * 106.39948 * 203.54016 * 10 9 8 12 12 O 1.42100 * 106.40028 * 336.45489 * 10 9 8 13 13 C 1.76193 * 107.21948 * 89.99573 * 10 9 8 14 14 H 1.08001 * 119.99989 * 0.02562 * 13 10 9 15 15 C 1.37874 * 119.99829 * 179.97438 * 13 10 9 16 16 N 1.31513 * 120.00387 * 0.02562 * 15 13 10 17 17 Si 1.86808 * 119.99993 * 179.97438 * 15 13 10 18 18 H 1.48502 * 109.46828 * 60.00412 * 17 15 13 19 19 H 1.48503 * 109.46825 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47259 * 300.00377 * 17 15 13 21 21 C 1.46671 * 109.36426 * 358.67877 * 9 8 6 22 22 C 1.54034 * 106.88965 * 18.21645 * 21 9 8 23 23 F 1.39905 * 113.00050 * 95.57702 * 22 21 9 24 24 C 1.34895 * 124.26079 * 270.91038 * 4 3 2 25 25 O 1.21281 * 125.16742 * 359.25318 * 24 4 3 26 26 H 4.40636 * 5.51356 * 180.02562 * 4 1 2 27 27 H 1.09004 * 109.47047 * 335.79143 * 3 2 1 28 28 H 1.08997 * 109.47153 * 215.79062 * 3 2 1 29 29 H 1.09000 * 110.24111 * 78.23333 * 5 4 3 30 30 H 1.09004 * 110.23949 * 316.25862 * 5 4 3 31 31 H 1.09002 * 109.74531 * 212.14657 * 8 6 5 32 32 H 1.09000 * 109.74971 * 332.80300 * 8 6 5 33 33 H 0.96995 * 120.00527 * 179.97438 * 16 15 13 34 34 H 1.08992 * 109.98201 * 258.85787 * 21 9 8 35 35 H 1.09006 * 109.97488 * 137.57225 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.1401 -1.3742 5 6 3.4096 1.4245 -2.0285 6 6 3.4625 1.1154 -3.5390 7 9 2.2574 1.3585 -4.2068 8 6 4.6571 1.8424 -4.1710 9 7 5.8046 0.9301 -4.1580 10 16 7.3063 1.2719 -4.7666 11 8 7.9147 0.0215 -5.0593 12 8 7.1229 2.2932 -5.7374 13 6 8.2472 1.9896 -3.4612 14 1 7.8025 2.1252 -2.4863 15 6 9.5515 2.3772 -3.6839 16 7 10.0932 2.2117 -4.8708 17 14 10.5489 3.1388 -2.3001 18 1 10.6481 2.1762 -1.1737 19 1 11.9107 3.4661 -2.7936 20 1 9.8805 4.3799 -1.8332 21 6 5.4149 -0.3325 -3.5215 22 6 3.8755 -0.3850 -3.5369 23 9 3.3637 -1.0993 -4.6255 24 6 3.3711 -0.8960 -2.2048 25 8 3.2248 -2.0661 -1.9213 26 1 -1.0500 0.0002 0.0001 27 1 3.0097 -0.9365 0.4214 28 1 3.0089 0.8344 0.6010 29 1 4.3669 1.8219 -1.6912 30 1 2.6102 2.1346 -1.8168 31 1 4.4184 2.1193 -5.1979 32 1 4.8912 2.7369 -3.5937 33 1 11.0106 2.4847 -5.0276 34 1 5.7781 -0.3595 -2.4943 35 1 5.8217 -1.1736 -4.0830 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275491639.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:34 Heat of formation + Delta-G solvation = -133.100203 kcal Electronic energy + Delta-G solvation = -27749.390035 eV Core-core repulsion = 23319.447706 eV Total energy + Delta-G solvation = -4429.942329 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.063 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.48158 -47.48095 -40.83752 -37.81174 -36.28848 -35.46579 -34.17353 -33.74702 -33.21067 -30.91496 -29.91726 -27.36395 -26.31030 -26.25457 -23.16883 -21.43247 -20.60528 -19.09484 -18.61643 -18.23439 -17.31340 -17.08432 -16.48743 -16.11312 -15.83340 -15.71577 -15.52004 -15.37461 -14.87092 -14.61880 -14.41823 -14.03015 -13.91736 -13.86070 -13.59665 -13.46082 -13.11983 -13.00729 -12.61464 -12.23318 -12.12764 -11.75800 -11.38757 -11.30180 -11.04527 -10.95030 -10.72488 -10.66223 -10.52929 -10.48863 -10.39585 -9.90372 -9.39968 -9.36652 -9.17231 -8.57122 -6.83623 -5.48711 1.78226 1.84348 2.12131 2.50495 2.92710 2.99503 3.05125 3.08962 3.23829 3.48341 3.52987 3.89915 4.01094 4.02592 4.16328 4.32220 4.48633 4.51999 4.79298 4.89794 5.00639 5.11806 5.29607 5.46432 5.54206 5.58617 5.61752 5.70228 5.84492 5.89436 5.96901 6.36415 6.43479 7.07771 7.18057 7.26283 7.59268 7.79449 8.73916 10.10620 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.017001 B = 0.004295 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.570831 B = 6517.308982 C = 7167.838625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.216 4.216 3 C 0.239 3.761 4 N -0.612 5.612 5 C 0.089 3.911 6 C 0.084 3.916 7 F -0.164 7.164 8 C 0.115 3.885 9 N -1.011 6.011 10 S 2.721 3.279 11 O -0.990 6.990 12 O -0.990 6.990 13 C -1.019 5.019 14 H 0.104 0.896 15 C 0.133 3.867 16 N -0.843 5.843 17 Si 0.924 3.076 18 H -0.263 1.263 19 H -0.275 1.275 20 H -0.263 1.263 21 C 0.120 3.880 22 C 0.066 3.934 23 F -0.155 7.155 24 C 0.521 3.479 25 O -0.488 6.488 26 H 0.219 0.781 27 H 0.112 0.888 28 H 0.113 0.887 29 H 0.116 0.884 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.294 0.706 34 H 0.090 0.910 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.814 0.913 10.481 17.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.218 4.218 3 C 0.119 3.881 4 N -0.347 5.347 5 C -0.034 4.034 6 C 0.063 3.937 7 F -0.144 7.144 8 C -0.012 4.012 9 N -0.845 5.845 10 S 2.824 3.176 11 O -0.980 6.980 12 O -0.980 6.980 13 C -1.153 5.153 14 H 0.122 0.878 15 C -0.086 4.086 16 N -0.472 5.472 17 Si 0.747 3.253 18 H -0.188 1.188 19 H -0.200 1.200 20 H -0.188 1.188 21 C -0.007 4.007 22 C 0.042 3.958 23 F -0.134 7.134 24 C 0.305 3.695 25 O -0.360 6.360 26 H 0.236 0.764 27 H 0.130 0.870 28 H 0.131 0.869 29 H 0.134 0.866 30 H 0.123 0.877 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -13.443 0.092 9.583 16.509 hybrid contribution 0.056 0.595 1.054 1.212 sum -13.387 0.687 10.637 17.112 Atomic orbital electron populations 1.25020 0.95999 1.00589 0.97559 1.23503 0.94969 1.00930 1.02357 1.18258 0.83615 1.05110 0.81166 1.48160 1.66024 1.06970 1.13524 1.22900 1.05299 0.86524 0.88660 1.22650 0.83602 0.94458 0.92978 1.92943 1.45275 1.94825 1.81374 1.21673 0.83514 0.92916 1.03118 1.59202 1.27523 1.20016 1.77770 1.00575 0.68973 0.73444 0.74651 1.93386 1.73127 1.46332 1.85196 1.93382 1.84625 1.59372 1.60661 1.30455 1.09989 1.58530 1.16321 0.87753 1.24764 0.96388 0.90814 0.96620 1.69870 1.16587 1.39124 1.21624 0.86149 0.78366 0.79904 0.80863 1.18775 1.20014 1.18767 1.21820 0.87903 0.90126 1.00884 1.22734 0.97363 0.91109 0.84640 1.92964 1.87954 1.78825 1.53695 1.20613 0.77179 0.85724 0.86027 1.90774 1.50859 1.16289 1.78093 0.76408 0.86981 0.86925 0.86616 0.87712 0.88827 0.88616 0.89556 0.89177 0.87228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.56 19.25 29.55 0.57 -0.99 16 2 C -0.22 -2.17 13.68 -37.12 -0.51 -2.68 16 3 C 0.24 2.06 6.41 -6.83 -0.04 2.02 16 4 N -0.61 -6.81 2.90 -175.73 -0.51 -7.32 16 5 C 0.09 0.86 6.49 -3.24 -0.02 0.83 16 6 C 0.08 1.11 1.89 -88.32 -0.17 0.94 16 7 F -0.16 -2.29 17.08 2.25 0.04 -2.25 16 8 C 0.11 1.70 6.19 -3.74 -0.02 1.68 16 9 N -1.01 -18.74 3.67 -113.31 -0.42 -19.15 16 10 S 2.72 67.54 5.20 -107.50 -0.56 66.98 16 11 O -0.99 -27.48 17.37 -57.17 -0.99 -28.48 16 12 O -0.99 -27.06 17.58 -57.17 -1.01 -28.07 16 13 C -1.02 -25.68 9.75 30.60 0.30 -25.38 16 14 H 0.10 2.31 7.81 -52.49 -0.41 1.90 16 15 C 0.13 3.47 5.46 -17.82 -0.10 3.37 16 16 N -0.84 -23.55 13.19 55.43 0.73 -22.82 16 17 Si 0.92 19.14 29.54 -169.99 -5.02 14.12 16 18 H -0.26 -5.27 7.11 56.52 0.40 -4.86 16 19 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 20 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 21 C 0.12 1.97 6.26 -3.41 -0.02 1.95 16 22 C 0.07 1.02 1.81 -89.53 -0.16 0.85 16 23 F -0.15 -2.70 17.05 2.25 0.04 -2.67 16 24 C 0.52 7.69 6.93 -10.62 -0.07 7.61 16 25 O -0.49 -8.55 17.62 5.56 0.10 -8.45 16 26 H 0.22 1.21 7.80 -54.09 -0.42 0.79 16 27 H 0.11 0.95 7.95 -51.93 -0.41 0.54 16 28 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.12 0.91 7.56 -51.93 -0.39 0.51 16 30 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.09 1.42 8.13 -51.93 -0.42 1.00 16 32 H 0.10 1.15 7.63 -51.93 -0.40 0.76 16 33 H 0.29 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.09 1.28 7.74 -51.93 -0.40 0.87 16 35 H 0.11 1.90 7.85 -51.93 -0.41 1.49 16 LS Contribution 333.70 15.07 5.03 5.03 Total: -1.00 -36.17 333.70 -6.06 -42.24 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -3.25 Total: 0.63 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: -0.25 Total: -9.79 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: -0.20 Total: -49.30 kcal Atomic # 8 Polarization: -63.10 SS G_CDS: -1.90 Total: -65.00 kcal Atomic # 9 Polarization: -4.99 SS G_CDS: 0.08 Total: -4.91 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.12 kcal Atomic # 16 Polarization: 67.54 SS G_CDS: -0.56 Total: 66.98 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -36.17 -6.06 -42.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275491639.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.865 kcal (2) G-P(sol) polarization free energy of solvation -36.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds