Wall clock time and date at job start Tue Mar 31 2020 17:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29413 * 1 3 3 Si 1.86800 * 120.00012 * 2 1 4 4 H 1.48500 * 109.47377 * 270.00100 * 3 2 1 5 5 H 1.48500 * 109.46938 * 30.00508 * 3 2 1 6 6 H 1.48498 * 109.47046 * 150.00129 * 3 2 1 7 7 C 1.46621 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99973 * 0.02562 * 7 2 1 9 9 S 1.71198 * 120.00193 * 179.97438 * 7 2 1 10 10 C 1.76205 * 100.00181 * 185.12085 * 9 7 2 11 11 C 1.39222 * 120.01636 * 265.46786 * 10 9 7 12 12 C 1.38140 * 120.20053 * 179.97438 * 11 10 9 13 13 C 1.38077 * 120.24743 * 359.72318 * 12 11 10 14 14 C 1.39651 * 120.03548 * 0.55465 * 13 12 11 15 15 C 1.47822 * 120.10474 * 179.72052 * 14 13 12 16 16 O 1.21567 * 120.00368 * 179.72338 * 15 14 13 17 17 N 1.34780 * 119.99773 * 359.45093 * 15 14 13 18 18 C 1.39381 * 120.00183 * 180.27871 * 17 15 14 19 19 C 1.36154 * 126.25903 * 359.97438 * 18 17 15 20 20 C 1.39733 * 107.85765 * 179.97438 * 19 18 17 21 21 N 1.48013 * 125.77792 * 180.02562 * 20 19 18 22 22 O 1.31693 * 120.00064 * 0.02562 * 21 20 19 23 23 O 1.31697 * 119.99877 * 179.97438 * 21 20 19 24 24 N 1.30834 * 108.44075 * 0.02562 * 20 19 18 25 25 N 1.35804 * 126.26617 * 179.68753 * 18 17 15 26 26 H 0.97004 * 126.09249 * 0.02562 * 25 18 17 27 27 C 1.38828 * 120.01984 * 85.44154 * 10 9 7 28 28 H 0.96999 * 120.00033 * 359.97438 * 1 2 3 29 29 H 1.07996 * 119.90637 * 359.95355 * 11 10 9 30 30 H 1.08005 * 119.87664 * 180.02562 * 12 11 10 31 31 H 1.08008 * 119.98294 * 180.27637 * 13 12 11 32 32 H 0.97004 * 120.00228 * 0.26916 * 17 15 14 33 33 H 1.07999 * 126.07118 * 359.96402 * 19 18 17 34 34 H 1.08002 * 120.12329 * 0.05271 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2941 0.0000 0.0000 3 14 2.2281 1.6177 0.0000 4 1 2.4756 2.0465 -1.4000 5 1 1.4256 2.6526 0.7002 6 1 3.5257 1.4401 0.7000 7 6 2.0272 -1.2698 -0.0006 8 1 1.4872 -2.2051 -0.0014 9 16 3.7392 -1.2698 -0.0012 10 6 4.0451 -2.9982 -0.1566 11 6 4.2603 -3.7723 0.9803 12 6 4.4999 -5.1277 0.8629 13 6 4.5221 -5.7249 -0.3818 14 6 4.3133 -4.9569 -1.5294 15 6 4.3428 -5.5936 -2.8631 16 8 4.1558 -4.9242 -3.8605 17 7 4.5825 -6.9153 -2.9737 18 6 4.6160 -7.5146 -4.2316 19 6 4.4248 -6.8904 -5.4264 20 6 4.5420 -7.8503 -6.4351 21 7 4.4055 -7.6005 -7.8875 22 8 4.1515 -6.3848 -8.3256 23 8 4.5389 -8.5938 -8.7419 24 7 4.7928 -9.0073 -5.8781 25 7 4.8509 -8.8270 -4.4902 26 1 5.0253 -9.5170 -3.8311 27 6 4.0712 -3.5887 -1.4128 28 1 -0.4850 0.8400 0.0004 29 1 4.2402 -3.3119 1.9570 30 1 4.6658 -5.7234 1.7485 31 1 4.7054 -6.7858 -0.4683 32 1 4.7317 -7.4495 -2.1779 33 1 4.2190 -5.8398 -5.5692 34 1 3.9050 -2.9905 -2.2965 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001303573617.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:59 Heat of formation + Delta-G solvation = 117.175095 kcal Electronic energy + Delta-G solvation = -24084.387124 eV Core-core repulsion = 20115.986733 eV Total energy + Delta-G solvation = -3968.400391 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 334.057 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -42.65100 -40.50738 -38.99260 -38.29458 -35.68982 -34.71838 -32.68166 -32.66130 -31.69465 -30.90602 -29.75895 -27.67938 -25.53254 -24.80131 -22.94963 -22.19760 -22.18234 -20.65219 -20.04816 -18.46417 -18.40842 -17.81925 -17.48189 -16.86398 -16.58768 -15.90034 -15.84716 -15.43739 -15.06638 -14.86148 -14.72894 -14.45987 -14.12176 -13.70987 -13.01209 -12.74127 -12.22235 -12.04677 -11.90361 -11.70059 -11.59824 -11.52435 -11.42638 -11.19756 -10.96502 -10.79934 -10.54393 -10.41917 -10.09588 -9.35288 -9.19791 -9.15770 -8.90082 -8.34840 -7.36163 -6.54478 -3.98760 -0.94581 0.22403 0.52929 0.99977 1.34352 1.36632 1.77298 2.57427 2.59251 2.80760 3.15884 3.26196 3.36264 3.60653 3.78119 4.08661 4.13014 4.28674 4.47697 4.69164 4.83770 4.88420 5.01874 5.11742 5.31962 5.38818 5.52548 5.59616 5.72585 5.79985 5.92300 6.17753 6.26977 6.30489 6.51579 6.61398 6.70385 6.84988 7.48940 7.55388 8.41729 8.78991 10.53028 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.015740 B = 0.002565 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.430100 B =10915.251666 C =12238.596788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.106 3.894 3 Si 0.863 3.137 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.238 1.238 7 C -0.595 4.595 8 H 0.085 0.915 9 S -0.060 6.060 10 C -0.088 4.088 11 C -0.042 4.042 12 C -0.137 4.137 13 C -0.086 4.086 14 C -0.156 4.156 15 C 0.575 3.425 16 O -0.487 6.487 17 N -0.647 5.647 18 C 0.341 3.659 19 C -0.221 4.221 20 C 0.185 3.815 21 N 0.004 4.996 22 O -0.125 6.125 23 O -0.137 6.137 24 N -0.201 5.201 25 N -0.441 5.441 26 H 0.455 0.545 27 C -0.008 4.008 28 H 0.279 0.721 29 H 0.137 0.863 30 H 0.129 0.871 31 H 0.118 0.882 32 H 0.419 0.581 33 H 0.205 0.795 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.513 -17.099 -0.539 20.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.112 4.112 3 Si 0.687 3.313 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.162 1.162 7 C -0.741 4.741 8 H 0.103 0.897 9 S 0.174 5.826 10 C -0.198 4.198 11 C -0.063 4.063 12 C -0.157 4.157 13 C -0.105 4.105 14 C -0.161 4.161 15 C 0.366 3.634 16 O -0.358 6.358 17 N -0.297 5.297 18 C 0.118 3.882 19 C -0.255 4.255 20 C -0.061 4.061 21 N 0.490 4.510 22 O -0.320 6.320 23 O -0.334 6.334 24 N -0.037 5.037 25 N -0.165 5.165 26 H 0.304 0.696 27 C -0.030 4.030 28 H 0.090 0.910 29 H 0.155 0.845 30 H 0.147 0.853 31 H 0.136 0.864 32 H 0.258 0.742 33 H 0.221 0.779 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 12.103 -16.712 -0.758 20.648 hybrid contribution -0.961 -0.388 0.453 1.131 sum 11.143 -17.100 -0.306 20.412 Atomic orbital electron populations 1.68859 1.07842 1.28987 1.41369 1.26225 0.93852 0.98931 0.92155 0.86750 0.81850 0.82530 0.80199 1.18753 1.19786 1.16211 1.22978 0.88829 0.96187 1.66062 0.89719 1.81799 1.09244 0.96325 1.95194 1.22465 1.01302 1.02250 0.93788 1.22029 0.92257 0.92924 0.99079 1.21073 1.02406 0.95249 0.96975 1.21116 0.98726 0.98322 0.92359 1.19426 1.11191 0.95175 0.90320 1.18595 0.75181 0.79317 0.90348 1.90779 1.45448 1.61691 1.37902 1.43059 1.71414 1.10396 1.04824 1.17870 0.98845 0.83685 0.87757 1.21469 1.14408 1.03410 0.86186 1.21341 1.09026 0.94267 0.81428 1.49149 0.97543 1.03072 1.01207 1.96367 1.50916 1.01883 1.82873 1.96323 1.53715 1.33073 1.50250 1.77470 1.21579 1.17978 0.86705 1.46403 1.57826 1.07141 1.05157 0.69627 1.21993 0.90343 0.92085 0.98582 0.90953 0.84523 0.85301 0.86443 0.74244 0.77853 0.83707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 53. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.91 13.88 55.99 0.78 -23.13 16 2 C 0.11 2.91 5.69 -15.19 -0.09 2.82 16 3 Si 0.86 19.89 27.89 -169.99 -4.74 15.15 16 4 H -0.26 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.24 -5.29 6.86 56.52 0.39 -4.91 16 7 C -0.59 -16.24 10.14 34.11 0.35 -15.90 16 8 H 0.08 2.54 7.97 -52.49 -0.42 2.12 16 9 S -0.06 -1.36 19.47 -107.50 -2.09 -3.45 16 10 C -0.09 -1.61 5.38 -39.00 -0.21 -1.82 16 11 C -0.04 -0.62 9.79 -39.25 -0.38 -1.01 16 12 C -0.14 -1.50 10.02 -39.68 -0.40 -1.90 16 13 C -0.09 -0.84 9.54 -39.11 -0.37 -1.21 16 14 C -0.16 -2.01 5.87 -105.00 -0.62 -2.63 16 15 C 0.58 6.92 7.74 -12.34 -0.10 6.82 16 16 O -0.49 -7.53 13.47 5.31 0.07 -7.46 16 17 N -0.65 -4.89 5.37 -12.21 -0.07 -4.95 16 18 C 0.34 3.00 8.11 -152.74 -1.24 1.76 16 19 C -0.22 -2.65 9.38 -39.77 -0.37 -3.03 16 20 C 0.19 2.32 8.21 -146.47 -1.20 1.12 16 21 N 0.00 0.05 4.98 32.99 0.16 0.22 16 22 O -0.13 -1.89 19.77 -31.56 -0.62 -2.51 16 23 O -0.14 -2.01 19.95 -31.57 -0.63 -2.64 16 24 N -0.20 -2.13 12.67 32.99 0.42 -1.71 16 25 N -0.44 -2.87 7.40 31.24 0.23 -2.64 16 26 H 0.46 0.84 8.96 -182.61 -1.64 -0.80 16 27 C -0.01 -0.14 9.34 -38.92 -0.36 -0.50 16 28 H 0.28 7.25 8.26 -40.82 -0.34 6.91 16 29 H 0.14 1.92 8.06 -52.49 -0.42 1.50 16 30 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 31 H 0.12 0.57 6.40 -52.48 -0.34 0.23 16 32 H 0.42 1.41 6.85 -40.82 -0.28 1.13 16 33 H 0.20 2.81 5.83 -52.49 -0.31 2.50 16 34 H 0.15 2.66 7.65 -52.49 -0.40 2.26 16 LS Contribution 333.19 15.07 5.02 5.02 Total: -1.00 -33.51 333.19 -9.84 -43.35 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -3.37 Total: 0.24 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -5.00 Total: -15.48 kcal Atomic # 7 Polarization: -33.74 SS G_CDS: 1.53 Total: -32.21 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: -1.18 Total: -12.61 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -4.74 Total: 15.15 kcal Atomic # 16 Polarization: -1.36 SS G_CDS: -2.09 Total: -3.45 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.51 -9.84 -43.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001303573617.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.525 kcal (2) G-P(sol) polarization free energy of solvation -33.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds