Wall clock time and date at job start Tue Mar 31 2020 17:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29413 * 1 3 3 Si 1.86800 * 120.00012 * 2 1 4 4 H 1.48500 * 109.47377 * 270.00100 * 3 2 1 5 5 H 1.48500 * 109.46938 * 30.00508 * 3 2 1 6 6 H 1.48498 * 109.47046 * 150.00129 * 3 2 1 7 7 C 1.46621 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99973 * 0.02562 * 7 2 1 9 9 S 1.71198 * 120.00193 * 179.97438 * 7 2 1 10 10 C 1.76205 * 100.00181 * 185.12085 * 9 7 2 11 11 C 1.39222 * 120.01636 * 265.46786 * 10 9 7 12 12 C 1.38140 * 120.20053 * 179.97438 * 11 10 9 13 13 C 1.38077 * 120.24743 * 359.72318 * 12 11 10 14 14 C 1.39651 * 120.03548 * 0.55465 * 13 12 11 15 15 C 1.47822 * 120.10474 * 179.72052 * 14 13 12 16 16 O 1.21567 * 120.00368 * 179.72338 * 15 14 13 17 17 N 1.34780 * 119.99773 * 359.45093 * 15 14 13 18 18 C 1.39381 * 120.00183 * 180.27871 * 17 15 14 19 19 C 1.36154 * 126.25903 * 359.97438 * 18 17 15 20 20 C 1.39733 * 107.85765 * 179.97438 * 19 18 17 21 21 N 1.48013 * 125.77792 * 180.02562 * 20 19 18 22 22 O 1.31693 * 120.00064 * 0.02562 * 21 20 19 23 23 O 1.31697 * 119.99877 * 179.97438 * 21 20 19 24 24 N 1.30834 * 108.44075 * 0.02562 * 20 19 18 25 25 N 1.35804 * 126.26617 * 179.68753 * 18 17 15 26 26 H 0.97004 * 126.09249 * 0.02562 * 25 18 17 27 27 C 1.38828 * 120.01984 * 85.44154 * 10 9 7 28 28 H 0.96999 * 120.00033 * 359.97438 * 1 2 3 29 29 H 1.07996 * 119.90637 * 359.95355 * 11 10 9 30 30 H 1.08005 * 119.87664 * 180.02562 * 12 11 10 31 31 H 1.08008 * 119.98294 * 180.27637 * 13 12 11 32 32 H 0.97004 * 120.00228 * 0.26916 * 17 15 14 33 33 H 1.07999 * 126.07118 * 359.96402 * 19 18 17 34 34 H 1.08002 * 120.12329 * 0.05271 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2941 0.0000 0.0000 3 14 2.2281 1.6177 0.0000 4 1 2.4756 2.0465 -1.4000 5 1 1.4256 2.6526 0.7002 6 1 3.5257 1.4401 0.7000 7 6 2.0272 -1.2698 -0.0006 8 1 1.4872 -2.2051 -0.0014 9 16 3.7392 -1.2698 -0.0012 10 6 4.0451 -2.9982 -0.1566 11 6 4.2603 -3.7723 0.9803 12 6 4.4999 -5.1277 0.8629 13 6 4.5221 -5.7249 -0.3818 14 6 4.3133 -4.9569 -1.5294 15 6 4.3428 -5.5936 -2.8631 16 8 4.1558 -4.9242 -3.8605 17 7 4.5825 -6.9153 -2.9737 18 6 4.6160 -7.5146 -4.2316 19 6 4.4248 -6.8904 -5.4264 20 6 4.5420 -7.8503 -6.4351 21 7 4.4055 -7.6005 -7.8875 22 8 4.1515 -6.3848 -8.3256 23 8 4.5389 -8.5938 -8.7419 24 7 4.7928 -9.0073 -5.8781 25 7 4.8509 -8.8270 -4.4902 26 1 5.0253 -9.5170 -3.8311 27 6 4.0712 -3.5887 -1.4128 28 1 -0.4850 0.8400 0.0004 29 1 4.2402 -3.3119 1.9570 30 1 4.6658 -5.7234 1.7485 31 1 4.7054 -6.7858 -0.4683 32 1 4.7317 -7.4495 -2.1779 33 1 4.2190 -5.8398 -5.5692 34 1 3.9050 -2.9905 -2.2965 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001303573617.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:58 Heat of formation + Delta-G solvation = 94.243970 kcal Electronic energy + Delta-G solvation = -24085.381492 eV Core-core repulsion = 20115.986733 eV Total energy + Delta-G solvation = -3969.394759 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 334.057 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.50221 -41.49762 -40.06301 -39.35950 -36.61671 -35.83016 -34.78973 -33.52932 -32.72161 -31.99460 -30.67496 -28.70736 -27.63115 -25.80175 -24.00682 -23.15675 -23.14322 -21.65650 -20.92298 -20.14546 -19.46775 -18.82339 -18.67749 -17.81223 -17.59861 -17.08871 -16.87642 -16.85673 -16.52071 -15.84942 -15.80178 -15.50965 -15.18525 -14.92438 -14.72410 -13.98733 -13.69336 -13.20258 -13.06152 -12.99336 -12.82480 -12.80645 -12.71922 -12.58783 -12.27442 -12.12288 -11.92443 -11.47206 -11.33501 -11.22124 -10.90604 -10.15077 -9.86878 -9.75377 -9.23721 -8.63212 -6.04466 -2.04137 -0.71976 -0.46613 0.06813 0.21968 0.53477 0.80926 1.11070 1.30902 1.43162 1.58770 1.72604 1.92475 2.21038 2.63938 2.72249 2.74466 3.11335 3.15354 3.38062 3.60095 3.88530 3.94432 4.28658 4.29100 4.40360 4.40908 4.58241 4.80037 4.86014 4.90162 5.10127 5.27559 5.43897 5.48063 5.50297 5.76071 5.79400 5.96961 6.12859 6.61599 6.68316 8.48250 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.015740 B = 0.002565 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.430100 B =10915.251666 C =12238.596788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.051 3.949 3 Si 0.927 3.073 4 H -0.261 1.261 5 H -0.257 1.257 6 H -0.226 1.226 7 C -0.610 4.610 8 H 0.038 0.962 9 S -0.074 6.074 10 C -0.124 4.124 11 C -0.052 4.052 12 C -0.122 4.122 13 C -0.053 4.053 14 C -0.155 4.155 15 C 0.579 3.421 16 O -0.528 6.528 17 N -0.616 5.616 18 C 0.358 3.642 19 C -0.242 4.242 20 C 0.168 3.832 21 N 0.006 4.994 22 O -0.166 6.166 23 O -0.137 6.137 24 N -0.199 5.199 25 N -0.394 5.394 26 H 0.481 0.519 27 C -0.035 4.035 28 H 0.286 0.714 29 H 0.138 0.862 30 H 0.180 0.820 31 H 0.187 0.813 32 H 0.445 0.555 33 H 0.181 0.819 34 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.762 -20.666 1.739 24.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.163 4.163 3 Si 0.747 3.253 4 H -0.185 1.185 5 H -0.181 1.181 6 H -0.149 1.149 7 C -0.756 4.756 8 H 0.056 0.944 9 S 0.161 5.839 10 C -0.235 4.235 11 C -0.073 4.073 12 C -0.141 4.141 13 C -0.071 4.071 14 C -0.160 4.160 15 C 0.369 3.631 16 O -0.402 6.402 17 N -0.269 5.269 18 C 0.134 3.866 19 C -0.276 4.276 20 C -0.077 4.077 21 N 0.489 4.511 22 O -0.353 6.353 23 O -0.337 6.337 24 N -0.037 5.037 25 N -0.123 5.123 26 H 0.336 0.664 27 C -0.057 4.057 28 H 0.097 0.903 29 H 0.156 0.844 30 H 0.197 0.803 31 H 0.204 0.796 32 H 0.289 0.711 33 H 0.198 0.802 34 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 14.355 -20.284 1.545 24.898 hybrid contribution -1.612 0.347 -0.163 1.657 sum 12.744 -19.937 1.382 23.702 Atomic orbital electron populations 1.68958 1.09521 1.30446 1.42667 1.27269 0.94838 1.02621 0.91557 0.85779 0.81126 0.77921 0.80520 1.18508 1.18107 1.14875 1.23125 0.91904 0.94690 1.65905 0.94394 1.81316 1.05145 1.01870 1.95608 1.22228 1.05711 0.99701 0.95857 1.22179 0.92373 0.94950 0.97792 1.21599 0.99744 0.93381 0.99376 1.21828 0.94005 1.01070 0.90193 1.19454 1.10782 0.93626 0.92169 1.18447 0.74781 0.80437 0.89398 1.90805 1.47174 1.63160 1.39079 1.42565 1.69968 1.08985 1.05335 1.17479 0.97834 0.84125 0.87144 1.21348 1.15728 1.02840 0.87686 1.21249 1.11094 0.95098 0.80221 1.49355 0.96837 1.02721 1.02230 1.96371 1.53207 1.02202 1.83509 1.96293 1.53264 1.32936 1.51204 1.77441 1.20929 1.17009 0.88327 1.46304 1.55006 1.06813 1.04226 0.66443 1.21710 0.92734 0.94301 0.96984 0.90278 0.84384 0.80283 0.79632 0.71134 0.80212 0.87048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -52.59 13.88 23.22 0.32 -52.27 16 2 C 0.05 2.89 5.69 87.24 0.50 3.39 16 3 Si 0.93 42.16 27.89 68.60 1.91 44.07 16 4 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 5 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 6 H -0.23 -9.72 6.86 99.48 0.68 -9.04 16 7 C -0.61 -35.42 10.14 70.01 0.71 -34.71 16 8 H 0.04 2.45 7.97 -2.91 -0.02 2.42 16 9 S -0.07 -3.48 19.47 -56.49 -1.10 -4.58 16 10 C -0.12 -4.68 5.38 22.65 0.12 -4.56 16 11 C -0.05 -1.47 9.79 22.48 0.22 -1.25 16 12 C -0.12 -2.02 10.02 22.21 0.22 -1.80 16 13 C -0.05 -0.71 9.54 22.57 0.22 -0.49 16 14 C -0.16 -3.65 5.87 -20.11 -0.12 -3.77 16 15 C 0.58 12.72 7.74 86.78 0.67 13.39 16 16 O -0.53 -16.71 13.47 -3.93 -0.05 -16.76 16 17 N -0.62 -6.46 5.37 -310.80 -1.67 -8.13 16 18 C 0.36 5.05 8.11 131.19 1.06 6.11 16 19 C -0.24 -5.63 9.38 22.15 0.21 -5.42 16 20 C 0.17 4.06 8.21 130.30 1.07 5.13 16 21 N 0.01 0.19 4.98 -49.53 -0.25 -0.06 16 22 O -0.17 -5.37 19.77 3.53 0.07 -5.30 16 23 O -0.14 -4.03 19.95 3.52 0.07 -3.96 16 24 N -0.20 -3.65 12.67 -49.55 -0.63 -4.28 16 25 N -0.39 -3.30 7.40 -55.09 -0.41 -3.71 16 26 H 0.48 -1.24 8.96 -213.33 -1.91 -3.15 16 27 C -0.04 -1.24 9.34 22.70 0.21 -1.03 16 28 H 0.29 15.42 8.26 -92.71 -0.77 14.65 16 29 H 0.14 3.75 8.06 -2.91 -0.02 3.72 16 30 H 0.18 1.33 8.06 -2.91 -0.02 1.31 16 31 H 0.19 -0.01 6.40 -2.91 -0.02 -0.02 16 32 H 0.44 -0.28 6.85 -92.71 -0.63 -0.91 16 33 H 0.18 5.23 5.83 -2.91 -0.02 5.22 16 34 H 0.11 4.54 7.65 -2.91 -0.02 4.52 16 Total: -1.00 -84.40 333.19 2.02 -82.38 By element: Atomic # 1 Polarization: -1.06 SS G_CDS: -1.35 Total: -2.41 kcal Atomic # 6 Polarization: -30.10 SS G_CDS: 5.09 Total: -25.01 kcal Atomic # 7 Polarization: -65.82 SS G_CDS: -2.63 Total: -68.44 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: 0.09 Total: -26.01 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 1.91 Total: 44.07 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -1.10 Total: -4.58 kcal Total: -84.40 2.02 -82.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001303573617.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.624 kcal (2) G-P(sol) polarization free energy of solvation -84.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds