Wall clock time and date at job start Tue Mar 31 2020 19:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31573 * 1 3 3 Si 1.86791 * 120.00218 * 2 1 4 4 H 1.48497 * 109.47256 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47395 * 300.00090 * 3 2 1 6 6 H 1.48500 * 109.47302 * 59.99881 * 3 2 1 7 7 C 1.38640 * 119.99564 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99862 * 180.02562 * 7 2 1 9 9 O 1.34814 * 120.00313 * 0.02562 * 7 2 1 10 10 C 1.35770 * 117.00163 * 185.38300 * 9 7 2 11 11 C 1.38904 * 120.00129 * 5.75105 * 10 9 7 12 12 C 1.38010 * 119.99546 * 180.02562 * 11 10 9 13 13 C 1.38881 * 120.00047 * 0.02562 * 12 11 10 14 14 N 1.40263 * 119.99239 * 179.97438 * 13 12 11 15 15 C 1.33891 * 124.20349 * 353.89718 * 14 13 12 16 16 O 1.21545 * 123.79468 * 359.97438 * 15 14 13 17 17 N 1.34743 * 112.41290 * 179.97438 * 15 14 13 18 18 C 1.46669 * 106.33262 * 0.02562 * 17 15 14 19 19 C 1.53225 * 110.84996 * 119.22776 * 18 17 15 20 20 C 1.55242 * 106.90464 * 76.01246 * 19 18 17 21 21 S 1.83489 * 102.30391 * 41.38185 * 20 19 18 22 22 C 1.53652 * 110.60737 * 241.16107 * 18 17 15 23 23 C 1.34977 * 124.19767 * 173.90493 * 14 13 12 24 24 O 1.21231 * 127.29903 * 0.02562 * 23 14 13 25 25 C 1.38873 * 120.01061 * 0.22633 * 13 12 11 26 26 C 1.38015 * 120.00010 * 359.49742 * 25 13 12 27 27 H 0.96998 * 119.99627 * 359.97438 * 1 2 3 28 28 H 1.07992 * 120.00449 * 359.97438 * 11 10 9 29 29 H 1.07993 * 120.00043 * 179.97438 * 12 11 10 30 30 H 0.96995 * 126.83508 * 180.02562 * 17 15 14 31 31 H 1.09001 * 109.97493 * 195.37511 * 19 18 17 32 32 H 1.09005 * 109.97247 * 316.61233 * 19 18 17 33 33 H 1.09001 * 110.83546 * 283.18069 * 20 19 18 34 34 H 1.08992 * 110.84143 * 159.58886 * 20 19 18 35 35 H 1.09001 * 110.43327 * 145.97759 * 22 18 17 36 36 H 1.09000 * 110.43313 * 23.48303 * 22 18 17 37 37 H 1.07998 * 119.99822 * 179.74276 * 25 13 12 38 38 H 1.07995 * 120.00016 * 180.25307 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 3.7097 1.3463 0.0006 5 1 1.8910 2.3964 -1.2125 6 1 1.8910 2.3964 1.2125 7 6 2.0088 -1.2007 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3682 0.0005 10 6 2.0695 -3.5042 0.1146 11 6 3.4372 -3.4267 0.3441 12 6 4.1840 -4.5815 0.4595 13 6 3.5682 -5.8210 0.3455 14 7 4.3274 -6.9946 0.4622 15 6 5.6621 -7.0203 0.5660 16 8 6.3592 -6.0247 0.5695 17 7 6.1455 -8.2741 0.6661 18 6 4.9841 -9.1687 0.6213 19 6 5.0720 -10.1167 -0.5794 20 6 6.1179 -11.2058 -0.2190 21 16 5.7174 -11.5676 1.5347 22 6 4.8794 -9.9844 1.9192 23 6 3.8033 -8.2383 0.4838 24 8 2.6325 -8.5434 0.4085 25 6 2.2016 -5.8987 0.1108 26 6 1.4536 -4.7441 0.0011 27 1 -0.4849 0.8401 0.0004 28 1 3.9163 -2.4628 0.4315 29 1 5.2475 -4.5213 0.6375 30 1 7.0763 -8.5334 0.7509 31 1 4.1014 -10.5782 -0.7612 32 1 5.3947 -9.5679 -1.4642 33 1 7.1315 -10.8160 -0.3128 34 1 5.9835 -12.0925 -0.8384 35 1 3.8345 -10.1594 2.1754 36 1 5.3909 -9.4711 2.7335 37 1 1.7236 -6.8627 0.0181 38 1 0.3902 -4.8045 -0.1774 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326502085.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:55 Heat of formation + Delta-G solvation = -19.195957 kcal Electronic energy + Delta-G solvation = -25992.040370 eV Core-core repulsion = 22121.266830 eV Total energy + Delta-G solvation = -3870.773540 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.08743 -39.15791 -38.96176 -37.68399 -36.50000 -35.17800 -32.98741 -32.24620 -30.33460 -30.03934 -28.62899 -26.13201 -25.39934 -23.98070 -23.14994 -22.07266 -20.81836 -20.56895 -18.55576 -17.88237 -17.53049 -17.06829 -16.99093 -16.58264 -16.29479 -15.93705 -15.13151 -14.88520 -14.65672 -14.42786 -14.38497 -13.97438 -13.73725 -13.63212 -13.21226 -12.95451 -12.84695 -12.71338 -12.63728 -12.24207 -12.07667 -11.97165 -11.75161 -11.16725 -11.11307 -10.74766 -10.49252 -10.44576 -10.21478 -10.01742 -9.94987 -9.31781 -8.84831 -8.33718 -8.23062 -7.15239 -6.53071 -4.10432 1.12787 1.15850 1.75143 1.94829 1.99712 2.10106 2.73160 2.97518 3.11255 3.12046 3.17041 3.41642 3.65303 3.91419 3.93140 4.14034 4.43791 4.47269 4.69036 4.90124 4.94009 5.03145 5.03403 5.15206 5.18726 5.24058 5.38397 5.65982 5.69402 6.05892 6.13180 6.42201 6.58330 6.68801 6.78109 6.88309 7.15383 7.17734 7.23929 7.37961 7.63054 7.91710 7.95000 8.92288 9.59669 10.64351 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.032374 B = 0.002558 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.683868 B =10942.031235 C =11509.021797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.392 4.392 8 H 0.095 0.905 9 O -0.170 6.170 10 C 0.153 3.847 11 C -0.220 4.220 12 C -0.076 4.076 13 C 0.010 3.990 14 N -0.495 5.495 15 C 0.702 3.298 16 O -0.521 6.521 17 N -0.718 5.718 18 C 0.115 3.885 19 C -0.124 4.124 20 C -0.072 4.072 21 S -0.263 6.263 22 C -0.074 4.074 23 C 0.532 3.468 24 O -0.447 6.447 25 C -0.083 4.083 26 C -0.178 4.178 27 H 0.271 0.729 28 H 0.135 0.865 29 H 0.147 0.853 30 H 0.441 0.559 31 H 0.108 0.892 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.115 0.885 35 H 0.118 0.882 36 H 0.114 0.886 37 H 0.141 0.859 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.266 -21.070 0.279 24.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.468 4.468 8 H 0.112 0.888 9 O -0.072 6.072 10 C 0.098 3.902 11 C -0.240 4.240 12 C -0.095 4.095 13 C -0.079 4.079 14 N -0.233 5.233 15 C 0.404 3.596 16 O -0.394 6.394 17 N -0.384 5.384 18 C 0.022 3.978 19 C -0.163 4.163 20 C -0.220 4.220 21 S -0.037 6.037 22 C -0.223 4.223 23 C 0.317 3.683 24 O -0.316 6.316 25 C -0.102 4.102 26 C -0.197 4.197 27 H 0.081 0.919 28 H 0.153 0.847 29 H 0.165 0.835 30 H 0.287 0.713 31 H 0.127 0.873 32 H 0.120 0.880 33 H 0.115 0.885 34 H 0.133 0.867 35 H 0.137 0.863 36 H 0.133 0.867 37 H 0.158 0.842 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 11.727 -21.355 0.891 24.380 hybrid contribution 0.725 1.676 -0.561 1.910 sum 12.452 -19.680 0.330 23.291 Atomic orbital electron populations 1.70054 1.06014 1.27813 1.45313 1.25332 0.95878 0.98973 0.96308 0.85620 0.79242 0.80127 0.78330 1.18939 1.20045 1.20051 1.21426 0.91958 0.80708 1.52689 0.88785 1.83993 1.34379 1.11539 1.77293 1.19527 0.90451 0.88078 0.92161 1.21099 0.93953 0.98616 1.10315 1.21273 1.01237 0.89754 0.97260 1.17275 0.90715 0.82772 1.17162 1.43511 1.07395 1.08052 1.64311 1.15899 0.81533 0.84389 0.77822 1.90920 1.60281 1.34192 1.53991 1.45547 1.08982 1.04578 1.79306 1.21751 0.86277 0.92664 0.97122 1.22730 1.01915 0.95158 0.96522 1.24327 1.01716 1.01845 0.94141 1.87828 1.75723 1.24889 1.15240 1.24256 1.06011 0.94261 0.97776 1.20157 0.89269 0.82659 0.76229 1.90742 1.15884 1.79726 1.45267 1.20865 0.91000 0.99310 0.99038 1.20056 1.00070 0.89210 1.10409 0.91892 0.84696 0.83547 0.71349 0.87330 0.87990 0.88499 0.86659 0.86349 0.86734 0.84183 0.85559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.74 13.67 55.48 0.76 -23.98 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 3 Si 0.94 20.24 29.55 -169.99 -5.02 15.22 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.39 -10.77 9.44 30.88 0.29 -10.47 16 8 H 0.09 2.40 5.29 -52.49 -0.28 2.12 16 9 O -0.17 -4.75 9.75 0.03 0.00 -4.75 16 10 C 0.15 3.66 6.65 -39.09 -0.26 3.40 16 11 C -0.22 -4.84 9.13 -39.42 -0.36 -5.20 16 12 C -0.08 -1.50 9.25 -39.43 -0.36 -1.87 16 13 C 0.01 0.18 6.56 -83.53 -0.55 -0.37 16 14 N -0.50 -7.39 2.84 -64.40 -0.18 -7.57 16 15 C 0.70 9.51 8.55 -87.74 -0.75 8.76 16 16 O -0.52 -8.66 14.67 5.33 0.08 -8.58 16 17 N -0.72 -6.18 5.81 -53.10 -0.31 -6.49 16 18 C 0.11 0.96 1.00 -132.30 -0.13 0.83 16 19 C -0.12 -0.75 5.50 -25.43 -0.14 -0.89 16 20 C -0.07 -0.33 7.34 38.35 0.28 -0.05 16 21 S -0.26 -1.89 23.27 -107.50 -2.50 -4.39 16 22 C -0.07 -0.56 6.55 37.50 0.25 -0.31 16 23 C 0.53 6.69 6.73 -10.77 -0.07 6.62 16 24 O -0.45 -6.43 15.05 5.60 0.08 -6.35 16 25 C -0.08 -1.56 9.31 -39.43 -0.37 -1.92 16 26 C -0.18 -3.75 9.99 -39.42 -0.39 -4.14 16 27 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.14 2.95 5.70 -52.49 -0.30 2.66 16 29 H 0.15 2.83 5.18 -52.49 -0.27 2.56 16 30 H 0.44 2.68 8.96 -40.82 -0.37 2.31 16 31 H 0.11 0.67 8.13 -51.93 -0.42 0.25 16 32 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.12 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.12 0.93 7.91 -51.93 -0.41 0.52 16 36 H 0.11 0.82 8.05 -51.93 -0.42 0.40 16 37 H 0.14 2.45 5.37 -52.49 -0.28 2.17 16 38 H 0.13 2.53 8.06 -52.49 -0.42 2.11 16 LS Contribution 332.82 15.07 5.02 5.02 Total: -1.00 -32.13 332.82 -8.32 -40.45 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -3.57 Total: 6.07 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -2.67 Total: -4.64 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 0.27 Total: -38.04 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: 0.16 Total: -19.68 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: -1.89 SS G_CDS: -2.50 Total: -4.39 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.13 -8.32 -40.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326502085.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.251 kcal (2) G-P(sol) polarization free energy of solvation -32.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds