Wall clock time and date at job start Tue Mar 31 2020 19:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31573 * 1 3 3 Si 1.86791 * 120.00218 * 2 1 4 4 H 1.48497 * 109.47256 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47395 * 300.00090 * 3 2 1 6 6 H 1.48500 * 109.47302 * 59.99881 * 3 2 1 7 7 C 1.38640 * 119.99564 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99862 * 180.02562 * 7 2 1 9 9 O 1.34814 * 120.00313 * 0.02562 * 7 2 1 10 10 C 1.35770 * 117.00163 * 185.38300 * 9 7 2 11 11 C 1.38904 * 120.00129 * 5.75105 * 10 9 7 12 12 C 1.38010 * 119.99546 * 180.02562 * 11 10 9 13 13 C 1.38881 * 120.00047 * 0.02562 * 12 11 10 14 14 N 1.40263 * 119.99239 * 179.97438 * 13 12 11 15 15 C 1.33891 * 124.20349 * 353.89718 * 14 13 12 16 16 O 1.21545 * 123.79468 * 359.97438 * 15 14 13 17 17 N 1.34743 * 112.41290 * 179.97438 * 15 14 13 18 18 C 1.46669 * 106.33262 * 0.02562 * 17 15 14 19 19 C 1.53225 * 110.84996 * 119.22776 * 18 17 15 20 20 C 1.55242 * 106.90464 * 76.01246 * 19 18 17 21 21 S 1.83489 * 102.30391 * 41.38185 * 20 19 18 22 22 C 1.53652 * 110.60737 * 241.16107 * 18 17 15 23 23 C 1.34977 * 124.19767 * 173.90493 * 14 13 12 24 24 O 1.21231 * 127.29903 * 0.02562 * 23 14 13 25 25 C 1.38873 * 120.01061 * 0.22633 * 13 12 11 26 26 C 1.38015 * 120.00010 * 359.49742 * 25 13 12 27 27 H 0.96998 * 119.99627 * 359.97438 * 1 2 3 28 28 H 1.07992 * 120.00449 * 359.97438 * 11 10 9 29 29 H 1.07993 * 120.00043 * 179.97438 * 12 11 10 30 30 H 0.96995 * 126.83508 * 180.02562 * 17 15 14 31 31 H 1.09001 * 109.97493 * 195.37511 * 19 18 17 32 32 H 1.09005 * 109.97247 * 316.61233 * 19 18 17 33 33 H 1.09001 * 110.83546 * 283.18069 * 20 19 18 34 34 H 1.08992 * 110.84143 * 159.58886 * 20 19 18 35 35 H 1.09001 * 110.43327 * 145.97759 * 22 18 17 36 36 H 1.09000 * 110.43313 * 23.48303 * 22 18 17 37 37 H 1.07998 * 119.99822 * 179.74276 * 25 13 12 38 38 H 1.07995 * 120.00016 * 180.25307 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 3.7097 1.3463 0.0006 5 1 1.8910 2.3964 -1.2125 6 1 1.8910 2.3964 1.2125 7 6 2.0088 -1.2007 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3682 0.0005 10 6 2.0695 -3.5042 0.1146 11 6 3.4372 -3.4267 0.3441 12 6 4.1840 -4.5815 0.4595 13 6 3.5682 -5.8210 0.3455 14 7 4.3274 -6.9946 0.4622 15 6 5.6621 -7.0203 0.5660 16 8 6.3592 -6.0247 0.5695 17 7 6.1455 -8.2741 0.6661 18 6 4.9841 -9.1687 0.6213 19 6 5.0720 -10.1167 -0.5794 20 6 6.1179 -11.2058 -0.2190 21 16 5.7174 -11.5676 1.5347 22 6 4.8794 -9.9844 1.9192 23 6 3.8033 -8.2383 0.4838 24 8 2.6325 -8.5434 0.4085 25 6 2.2016 -5.8987 0.1108 26 6 1.4536 -4.7441 0.0011 27 1 -0.4849 0.8401 0.0004 28 1 3.9163 -2.4628 0.4315 29 1 5.2475 -4.5213 0.6375 30 1 7.0763 -8.5334 0.7509 31 1 4.1014 -10.5782 -0.7612 32 1 5.3947 -9.5679 -1.4642 33 1 7.1315 -10.8160 -0.3128 34 1 5.9835 -12.0925 -0.8384 35 1 3.8345 -10.1594 2.1754 36 1 5.3909 -9.4711 2.7335 37 1 1.7236 -6.8627 0.0181 38 1 0.3902 -4.8045 -0.1774 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326502085.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:54 Heat of formation + Delta-G solvation = -40.623875 kcal Electronic energy + Delta-G solvation = -25992.969554 eV Core-core repulsion = 22121.266830 eV Total energy + Delta-G solvation = -3871.702725 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.16213 -40.85825 -40.09804 -38.97040 -37.86221 -36.41753 -34.36413 -33.69428 -32.00105 -30.68939 -30.15795 -27.55865 -26.71259 -25.13159 -24.36582 -23.47363 -21.98411 -21.75727 -20.13231 -19.32224 -18.75002 -18.31693 -18.14868 -17.66880 -17.20663 -17.02515 -16.42010 -16.12932 -15.91479 -15.66624 -15.55838 -15.42633 -15.33760 -14.76192 -14.56737 -14.36655 -13.83915 -13.78182 -13.63888 -13.57976 -13.30829 -13.08729 -12.80807 -12.76045 -12.60939 -12.11434 -11.84568 -11.73759 -11.60896 -11.19661 -10.90337 -10.81097 -10.72748 -10.01062 -8.87928 -8.76446 -8.50934 -6.18230 0.09444 0.37478 0.43039 0.56335 0.89039 1.24936 1.35988 1.42264 1.54092 1.79099 1.86780 2.15835 2.51965 2.73346 2.95429 3.08711 3.28911 3.39638 3.65025 3.72934 3.97948 4.01560 4.04082 4.09183 4.20299 4.38695 4.42599 4.58131 4.65613 4.69633 4.82716 4.94248 5.01043 5.12641 5.23533 5.34058 5.53042 5.67006 5.89664 5.91009 5.97135 6.14094 6.86952 6.93539 7.69056 8.71688 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.032374 B = 0.002558 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.683868 B =10942.031235 C =11509.021797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.019 4.019 3 Si 1.018 2.982 4 H -0.252 1.252 5 H -0.267 1.267 6 H -0.268 1.268 7 C -0.415 4.415 8 H 0.103 0.897 9 O -0.219 6.219 10 C 0.121 3.879 11 C -0.221 4.221 12 C -0.080 4.080 13 C 0.038 3.962 14 N -0.510 5.510 15 C 0.701 3.299 16 O -0.553 6.553 17 N -0.687 5.687 18 C 0.128 3.872 19 C -0.121 4.121 20 C -0.058 4.058 21 S -0.285 6.285 22 C -0.070 4.070 23 C 0.531 3.469 24 O -0.463 6.463 25 C -0.078 4.078 26 C -0.178 4.178 27 H 0.274 0.726 28 H 0.131 0.869 29 H 0.157 0.843 30 H 0.457 0.543 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.134 0.866 35 H 0.115 0.885 36 H 0.120 0.880 37 H 0.160 0.840 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.945 -23.733 0.042 28.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.217 4.217 3 Si 0.837 3.163 4 H -0.175 1.175 5 H -0.192 1.192 6 H -0.193 1.193 7 C -0.491 4.491 8 H 0.120 0.880 9 O -0.125 6.125 10 C 0.069 3.931 11 C -0.240 4.240 12 C -0.099 4.099 13 C -0.053 4.053 14 N -0.247 5.247 15 C 0.403 3.597 16 O -0.428 6.428 17 N -0.354 5.354 18 C 0.036 3.964 19 C -0.161 4.161 20 C -0.206 4.206 21 S -0.059 6.059 22 C -0.220 4.220 23 C 0.318 3.682 24 O -0.333 6.333 25 C -0.097 4.097 26 C -0.198 4.198 27 H 0.084 0.916 28 H 0.148 0.852 29 H 0.174 0.826 30 H 0.306 0.694 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.134 0.866 34 H 0.153 0.847 35 H 0.133 0.867 36 H 0.138 0.862 37 H 0.177 0.823 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 14.466 -24.144 0.663 28.154 hybrid contribution 0.012 2.040 -0.473 2.094 sum 14.478 -22.104 0.190 26.424 Atomic orbital electron populations 1.70185 1.07981 1.28955 1.48132 1.26581 0.96847 1.02688 0.95583 0.84533 0.78273 0.74810 0.78646 1.17526 1.19216 1.19276 1.21874 0.92596 0.81279 1.53320 0.87966 1.83965 1.35683 1.12493 1.80359 1.19947 0.91358 0.88093 0.93715 1.21155 0.93440 0.99409 1.10037 1.21376 1.01566 0.89624 0.97335 1.17376 0.90881 0.83988 1.13036 1.43653 1.08132 1.07702 1.65238 1.15972 0.80783 0.85348 0.77636 1.90899 1.60652 1.35682 1.55611 1.45370 1.09891 1.02668 1.77488 1.21822 0.83684 0.91799 0.99110 1.22788 1.02853 0.94994 0.95463 1.24445 1.02070 1.02055 0.92004 1.88024 1.75682 1.24472 1.17754 1.24202 1.06159 0.94421 0.97182 1.20838 0.90161 0.82368 0.74864 1.90732 1.17089 1.79846 1.45598 1.21036 0.91176 0.99198 0.98317 1.20282 1.00713 0.89055 1.09716 0.91638 0.85175 0.82581 0.69351 0.87076 0.86856 0.86563 0.84744 0.86656 0.86200 0.82282 0.85080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.40 13.67 21.61 0.30 -55.11 16 2 C -0.02 -1.04 5.49 84.83 0.47 -0.58 16 3 Si 1.02 42.50 29.55 68.60 2.03 44.53 16 4 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 5 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 6 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 7 C -0.41 -23.90 9.44 67.92 0.64 -23.26 16 8 H 0.10 5.44 5.29 -2.91 -0.02 5.42 16 9 O -0.22 -13.02 9.75 -22.80 -0.22 -13.24 16 10 C 0.12 6.01 6.65 22.59 0.15 6.16 16 11 C -0.22 -9.96 9.13 22.38 0.20 -9.76 16 12 C -0.08 -3.13 9.25 22.37 0.21 -2.92 16 13 C 0.04 1.35 6.56 38.10 0.25 1.60 16 14 N -0.51 -14.08 2.84 -594.72 -1.69 -15.77 16 15 C 0.70 17.24 8.55 179.34 1.53 18.77 16 16 O -0.55 -17.36 14.67 -3.86 -0.06 -17.41 16 17 N -0.69 -9.43 5.81 -440.21 -2.56 -11.99 16 18 C 0.13 1.72 1.00 3.20 0.00 1.72 16 19 C -0.12 -0.97 5.50 31.44 0.17 -0.80 16 20 C -0.06 -0.27 7.34 72.75 0.53 0.26 16 21 S -0.29 -3.16 23.27 -56.49 -1.31 -4.47 16 22 C -0.07 -0.85 6.55 72.20 0.47 -0.38 16 23 C 0.53 11.97 6.73 87.71 0.59 12.56 16 24 O -0.46 -12.25 15.05 -2.88 -0.04 -12.30 16 25 C -0.08 -2.87 9.31 22.37 0.21 -2.66 16 26 C -0.18 -7.67 9.99 22.38 0.22 -7.44 16 27 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 28 H 0.13 5.91 5.70 -2.91 -0.02 5.89 16 29 H 0.16 5.92 5.18 -2.91 -0.02 5.90 16 30 H 0.46 3.66 8.96 -92.71 -0.83 2.83 16 31 H 0.11 0.95 8.13 -2.39 -0.02 0.93 16 32 H 0.11 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 34 H 0.13 0.24 8.14 -2.39 -0.02 0.22 16 35 H 0.12 1.53 7.91 -2.39 -0.02 1.51 16 36 H 0.12 1.35 8.05 -2.39 -0.02 1.33 16 37 H 0.16 5.30 5.37 -2.91 -0.02 5.29 16 38 H 0.13 5.42 8.06 -2.91 -0.02 5.40 16 Total: -1.00 -73.98 332.82 2.41 -71.56 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: 0.32 Total: 20.92 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: 5.66 Total: -6.72 kcal Atomic # 7 Polarization: -78.92 SS G_CDS: -3.95 Total: -82.87 kcal Atomic # 8 Polarization: -42.62 SS G_CDS: -0.32 Total: -42.95 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Atomic # 16 Polarization: -3.16 SS G_CDS: -1.31 Total: -4.47 kcal Total: -73.98 2.41 -71.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326502085.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.938 kcal (2) G-P(sol) polarization free energy of solvation -73.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds