Wall clock time and date at job start Tue Mar 31 2020 19:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86804 * 119.99861 * 2 1 4 4 H 1.48501 * 109.46755 * 270.00244 * 3 2 1 5 5 H 1.48500 * 109.46904 * 29.99902 * 3 2 1 6 6 H 1.48494 * 109.47101 * 149.99993 * 3 2 1 7 7 C 1.38656 * 119.99910 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00041 * 0.02562 * 7 2 1 9 9 O 1.34824 * 119.99446 * 179.97438 * 7 2 1 10 10 C 1.35756 * 116.99556 * 185.05911 * 9 7 2 11 11 C 1.38898 * 120.07312 * 354.49128 * 10 9 7 12 12 C 1.38075 * 119.93444 * 179.97438 * 11 10 9 13 13 C 1.38328 * 120.06839 * 359.74414 * 12 11 10 14 14 C 1.38281 * 120.13690 * 0.51161 * 13 12 11 15 15 C 1.50699 * 119.96577 * 179.76506 * 14 13 12 16 16 N 1.46501 * 109.46900 * 269.72277 * 15 14 13 17 17 C 1.34963 * 124.19774 * 90.00418 * 16 15 14 18 18 O 1.21231 * 127.26634 * 2.89757 * 17 16 15 19 19 C 1.51047 * 105.46754 * 183.15918 * 17 16 15 20 20 H 1.09002 * 111.63587 * 112.22728 * 19 17 16 21 21 C 1.54937 * 110.43589 * 237.79587 * 19 17 16 22 22 S 1.83989 * 100.47979 * 154.88069 * 21 19 17 23 23 C 1.83219 * 96.20971 * 338.00491 * 22 21 19 24 24 N 1.47614 * 104.30508 * 356.09050 * 23 22 21 25 25 C 1.33932 * 124.20046 * 270.01698 * 16 15 14 26 26 O 1.21534 * 123.84701 * 4.03482 * 25 16 15 27 27 C 1.38128 * 120.06852 * 359.48725 * 14 13 12 28 28 H 0.97000 * 120.00547 * 0.02562 * 1 2 3 29 29 H 1.08004 * 120.02694 * 359.97438 * 11 10 9 30 30 H 1.08001 * 119.96796 * 179.97438 * 12 11 10 31 31 H 1.07993 * 119.93372 * 180.27437 * 13 12 11 32 32 H 1.09000 * 109.46819 * 149.72300 * 15 14 13 33 33 H 1.09000 * 109.46916 * 29.72514 * 15 14 13 34 34 H 1.09005 * 111.21521 * 272.68889 * 21 19 17 35 35 H 1.08998 * 111.21680 * 37.02182 * 21 19 17 36 36 H 1.08996 * 110.92600 * 237.13522 * 23 22 21 37 37 H 1.09003 * 109.95492 * 114.56056 * 23 22 21 38 38 H 1.07997 * 120.03324 * 180.27263 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4469 2.6527 0.7000 6 1 3.5471 1.4403 0.7000 7 6 2.0088 -1.2008 0.0005 8 1 1.4689 -2.1360 0.0005 9 8 3.3571 -1.2007 0.0000 10 6 3.9734 -2.4057 -0.1061 11 6 3.2233 -3.5746 -0.0927 12 6 3.8530 -4.7986 -0.2013 13 6 5.2290 -4.8612 -0.3287 14 6 5.9790 -3.6995 -0.3371 15 6 7.4783 -3.7725 -0.4709 16 7 8.0838 -3.8565 0.8605 17 6 8.3392 -5.0140 1.5060 18 8 8.1650 -6.1397 1.0912 19 6 8.8819 -4.6107 2.8567 20 1 8.1928 -4.8703 3.6604 21 6 10.2915 -5.2152 3.0758 22 16 10.9856 -4.0157 4.2861 23 6 9.8576 -2.6346 3.8654 24 7 9.0592 -3.1472 2.7346 25 6 8.4523 -2.7944 1.5884 26 8 8.2591 -1.6428 1.2513 27 6 5.3550 -2.4720 -0.2289 28 1 -0.4851 0.8400 -0.0004 29 1 2.1486 -3.5261 0.0027 30 1 3.2704 -5.7079 -0.1905 31 1 5.7189 -5.8195 -0.4180 32 1 7.8415 -2.8795 -0.9795 33 1 7.7489 -4.6557 -1.0496 34 1 10.2295 -6.2159 3.5035 35 1 10.8668 -5.2201 2.1500 36 1 10.4198 -1.7503 3.5656 37 1 9.2135 -2.4083 4.7153 38 1 5.9409 -1.5649 -0.2399 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332718292.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:48 Heat of formation + Delta-G solvation = -8.765678 kcal Electronic energy + Delta-G solvation = -26077.999949 eV Core-core repulsion = 22207.678700 eV Total energy + Delta-G solvation = -3870.321249 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.78284 -39.28887 -38.84129 -37.43983 -36.77022 -35.47702 -32.44027 -31.69650 -31.20515 -29.56478 -28.44340 -26.15341 -25.27799 -24.88875 -22.44903 -21.80771 -21.23696 -20.35249 -18.12923 -17.96795 -17.61752 -17.29720 -17.08602 -16.41942 -15.82541 -15.42855 -15.32095 -15.24378 -14.88817 -14.58011 -14.16243 -14.02853 -13.85768 -13.73837 -13.42649 -13.14238 -12.85074 -12.76842 -12.63412 -12.27452 -11.93727 -11.71228 -11.44308 -11.14059 -10.88029 -10.84789 -10.70961 -10.52455 -10.22224 -9.95832 -9.63057 -9.42679 -8.91426 -8.41276 -8.34678 -7.47017 -6.45076 -4.12121 0.92983 1.08220 1.37957 1.51714 2.00494 2.17389 2.65252 2.73778 3.21166 3.25129 3.41347 3.52810 3.70679 4.18191 4.22249 4.32850 4.39868 4.62022 4.69868 4.74158 4.84033 4.94461 5.01034 5.04561 5.20593 5.24270 5.52111 5.58498 5.79032 5.95350 6.03162 6.18789 6.40145 6.66770 6.78371 6.99167 7.03003 7.11127 7.21361 7.49969 7.73159 7.75364 7.98706 8.90070 9.51823 10.62316 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.016468 B = 0.003239 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.835803 B = 8642.627308 C = 9738.007839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.065 3.935 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.258 1.258 7 C -0.391 4.391 8 H 0.106 0.894 9 O -0.215 6.215 10 C 0.154 3.846 11 C -0.209 4.209 12 C -0.080 4.080 13 C -0.182 4.182 14 C -0.090 4.090 15 C 0.167 3.833 16 N -0.564 5.564 17 C 0.536 3.464 18 O -0.455 6.455 19 C 0.047 3.953 20 H 0.148 0.852 21 C -0.058 4.058 22 S -0.258 6.258 23 C 0.205 3.795 24 N -0.637 5.637 25 C 0.733 3.267 26 O -0.512 6.512 27 C -0.161 4.161 28 H 0.280 0.720 29 H 0.134 0.866 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.133 0.867 35 H 0.106 0.894 36 H 0.118 0.882 37 H 0.110 0.890 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.003 -10.434 6.260 24.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.139 4.139 3 Si 0.729 3.271 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.182 1.182 7 C -0.466 4.466 8 H 0.124 0.876 9 O -0.120 6.120 10 C 0.102 3.898 11 C -0.228 4.228 12 C -0.098 4.098 13 C -0.201 4.201 14 C -0.091 4.091 15 C 0.048 3.952 16 N -0.309 5.309 17 C 0.321 3.679 18 O -0.323 6.323 19 C -0.063 4.063 20 H 0.165 0.835 21 C -0.208 4.208 22 S -0.032 6.032 23 C -0.026 4.026 24 N -0.380 5.380 25 C 0.435 3.565 26 O -0.382 6.382 27 C -0.180 4.180 28 H 0.090 0.910 29 H 0.152 0.848 30 H 0.131 0.869 31 H 0.130 0.870 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.151 0.849 35 H 0.124 0.876 36 H 0.136 0.864 37 H 0.128 0.872 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 21.588 -9.846 6.610 24.631 hybrid contribution -0.947 0.758 -0.699 1.400 sum 20.641 -9.088 5.911 23.315 Atomic orbital electron populations 1.69643 1.05575 1.28579 1.47800 1.24460 0.95014 0.98857 0.95532 0.86201 0.80427 0.81371 0.79101 1.19772 1.20713 1.18242 1.20763 0.76836 0.96645 1.52389 0.87625 1.83592 1.22628 1.25506 1.80234 1.19055 0.91538 0.85651 0.93551 1.21382 1.01294 0.91925 1.08233 1.20790 0.94121 0.96834 0.98076 1.20587 0.93982 0.96712 1.08845 1.19342 0.93150 0.93312 1.03288 1.20622 0.90213 1.05081 0.79314 1.46702 1.57390 1.07046 1.19803 1.20397 0.76692 0.84662 0.86147 1.90812 1.49600 1.20102 1.71811 1.23486 0.99069 0.84312 0.99434 0.83518 1.24446 0.93941 1.00972 1.01447 1.88242 1.50462 1.12235 1.52243 1.23794 0.92816 0.97658 0.88368 1.48538 1.57686 1.08117 1.23644 1.15150 0.77915 0.84754 0.78687 1.91043 1.57802 1.17362 1.72009 1.20163 0.92076 0.97411 1.08397 0.90987 0.84799 0.86923 0.87033 0.87838 0.87716 0.84918 0.87559 0.86394 0.87161 0.85907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.38 13.96 55.48 0.77 -24.61 16 2 C 0.06 1.83 5.49 -17.51 -0.10 1.73 16 3 Si 0.90 21.95 28.62 -169.99 -4.86 17.08 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.26 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.39 -11.04 9.95 30.89 0.31 -10.73 16 8 H 0.11 3.03 5.44 -52.49 -0.29 2.74 16 9 O -0.21 -5.73 8.59 0.05 0.00 -5.73 16 10 C 0.15 3.58 6.65 -39.11 -0.26 3.32 16 11 C -0.21 -4.46 9.17 -39.40 -0.36 -4.82 16 12 C -0.08 -1.43 10.04 -39.61 -0.40 -1.82 16 13 C -0.18 -2.99 9.70 -39.53 -0.38 -3.38 16 14 C -0.09 -1.50 5.46 -104.65 -0.57 -2.07 16 15 C 0.17 2.17 5.82 -5.19 -0.03 2.14 16 16 N -0.56 -7.10 2.60 -122.18 -0.32 -7.42 16 17 C 0.54 5.90 7.59 -10.73 -0.08 5.82 16 18 O -0.45 -5.76 17.76 5.60 0.10 -5.66 16 19 C 0.05 0.39 3.73 -67.11 -0.25 0.14 16 20 H 0.15 0.98 8.14 -51.93 -0.42 0.56 16 21 C -0.06 -0.35 7.04 38.18 0.27 -0.08 16 22 S -0.26 -1.79 23.37 -107.50 -2.51 -4.30 16 23 C 0.21 1.49 8.21 60.46 0.50 1.98 16 24 N -0.64 -6.38 3.76 -173.45 -0.65 -7.03 16 25 C 0.73 9.92 8.59 -88.00 -0.76 9.16 16 26 O -0.51 -8.82 17.53 5.34 0.09 -8.73 16 27 C -0.16 -3.23 9.65 -39.39 -0.38 -3.61 16 28 H 0.28 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.13 2.99 5.64 -52.48 -0.30 2.70 16 30 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 31 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 32 H 0.10 1.29 7.85 -51.93 -0.41 0.88 16 33 H 0.10 1.14 7.93 -51.93 -0.41 0.73 16 34 H 0.13 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.11 0.64 8.05 -51.93 -0.42 0.22 16 36 H 0.12 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16 LS Contribution 344.54 15.07 5.19 5.19 Total: -1.00 -32.80 344.54 -8.59 -41.40 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -3.91 Total: 2.03 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -2.50 Total: -2.23 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: -0.19 Total: -39.05 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: 0.19 Total: -20.11 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.86 Total: 17.08 kcal Atomic # 16 Polarization: -1.79 SS G_CDS: -2.51 Total: -4.30 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.80 -8.59 -41.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332718292.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.632 kcal (2) G-P(sol) polarization free energy of solvation -32.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds