Wall clock time and date at job start Tue Mar 31 2020 19:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86804 * 119.99861 * 2 1 4 4 H 1.48501 * 109.46755 * 270.00244 * 3 2 1 5 5 H 1.48500 * 109.46904 * 29.99902 * 3 2 1 6 6 H 1.48494 * 109.47101 * 149.99993 * 3 2 1 7 7 C 1.38656 * 119.99910 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00041 * 0.02562 * 7 2 1 9 9 O 1.34824 * 119.99446 * 179.97438 * 7 2 1 10 10 C 1.35756 * 116.99556 * 185.05911 * 9 7 2 11 11 C 1.38898 * 120.07312 * 354.49128 * 10 9 7 12 12 C 1.38075 * 119.93444 * 179.97438 * 11 10 9 13 13 C 1.38328 * 120.06839 * 359.74414 * 12 11 10 14 14 C 1.38281 * 120.13690 * 0.51161 * 13 12 11 15 15 C 1.50699 * 119.96577 * 179.76506 * 14 13 12 16 16 N 1.46501 * 109.46900 * 269.72277 * 15 14 13 17 17 C 1.34963 * 124.19774 * 90.00418 * 16 15 14 18 18 O 1.21231 * 127.26634 * 2.89757 * 17 16 15 19 19 C 1.51047 * 105.46754 * 183.15918 * 17 16 15 20 20 H 1.09002 * 111.63587 * 112.22728 * 19 17 16 21 21 C 1.54937 * 110.43589 * 237.79587 * 19 17 16 22 22 S 1.83989 * 100.47979 * 154.88069 * 21 19 17 23 23 C 1.83219 * 96.20971 * 338.00491 * 22 21 19 24 24 N 1.47614 * 104.30508 * 356.09050 * 23 22 21 25 25 C 1.33932 * 124.20046 * 270.01698 * 16 15 14 26 26 O 1.21534 * 123.84701 * 4.03482 * 25 16 15 27 27 C 1.38128 * 120.06852 * 359.48725 * 14 13 12 28 28 H 0.97000 * 120.00547 * 0.02562 * 1 2 3 29 29 H 1.08004 * 120.02694 * 359.97438 * 11 10 9 30 30 H 1.08001 * 119.96796 * 179.97438 * 12 11 10 31 31 H 1.07993 * 119.93372 * 180.27437 * 13 12 11 32 32 H 1.09000 * 109.46819 * 149.72300 * 15 14 13 33 33 H 1.09000 * 109.46916 * 29.72514 * 15 14 13 34 34 H 1.09005 * 111.21521 * 272.68889 * 21 19 17 35 35 H 1.08998 * 111.21680 * 37.02182 * 21 19 17 36 36 H 1.08996 * 110.92600 * 237.13522 * 23 22 21 37 37 H 1.09003 * 109.95492 * 114.56056 * 23 22 21 38 38 H 1.07997 * 120.03324 * 180.27263 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4469 2.6527 0.7000 6 1 3.5471 1.4403 0.7000 7 6 2.0088 -1.2008 0.0005 8 1 1.4689 -2.1360 0.0005 9 8 3.3571 -1.2007 0.0000 10 6 3.9734 -2.4057 -0.1061 11 6 3.2233 -3.5746 -0.0927 12 6 3.8530 -4.7986 -0.2013 13 6 5.2290 -4.8612 -0.3287 14 6 5.9790 -3.6995 -0.3371 15 6 7.4783 -3.7725 -0.4709 16 7 8.0838 -3.8565 0.8605 17 6 8.3392 -5.0140 1.5060 18 8 8.1650 -6.1397 1.0912 19 6 8.8819 -4.6107 2.8567 20 1 8.1928 -4.8703 3.6604 21 6 10.2915 -5.2152 3.0758 22 16 10.9856 -4.0157 4.2861 23 6 9.8576 -2.6346 3.8654 24 7 9.0592 -3.1472 2.7346 25 6 8.4523 -2.7944 1.5884 26 8 8.2591 -1.6428 1.2513 27 6 5.3550 -2.4720 -0.2289 28 1 -0.4851 0.8400 -0.0004 29 1 2.1486 -3.5261 0.0027 30 1 3.2704 -5.7079 -0.1905 31 1 5.7189 -5.8195 -0.4180 32 1 7.8415 -2.8795 -0.9795 33 1 7.7489 -4.6557 -1.0496 34 1 10.2295 -6.2159 3.5035 35 1 10.8668 -5.2201 2.1500 36 1 10.4198 -1.7503 3.5656 37 1 9.2135 -2.4083 4.7153 38 1 5.9409 -1.5649 -0.2399 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332718292.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:48 Heat of formation + Delta-G solvation = -29.774775 kcal Electronic energy + Delta-G solvation = -26078.910972 eV Core-core repulsion = 22207.678700 eV Total energy + Delta-G solvation = -3871.232272 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.69338 -40.97344 -39.81771 -38.79754 -37.95606 -36.57280 -34.50650 -32.98098 -31.85928 -31.16424 -29.48719 -27.45239 -26.89033 -25.84130 -23.55374 -23.08588 -22.61145 -21.48112 -19.76333 -19.17383 -18.93701 -18.42093 -17.77203 -17.49010 -16.94934 -16.70722 -16.60107 -16.28455 -16.07584 -15.85393 -15.69357 -15.45894 -15.12423 -14.87501 -14.51743 -14.27847 -14.23685 -14.03535 -13.65853 -13.34762 -13.21564 -13.16988 -12.77148 -12.65612 -12.47866 -12.45082 -12.00759 -11.64459 -11.47147 -11.34496 -11.02263 -10.95716 -10.40816 -9.87153 -9.18927 -8.93139 -8.54468 -6.27044 0.10005 0.30670 0.44361 0.57845 0.71617 1.00330 1.27164 1.30673 1.47973 1.71863 1.85200 2.24060 2.69475 2.78828 2.95009 3.04735 3.08307 3.52586 3.72376 3.77119 3.91100 4.06456 4.15851 4.23847 4.26828 4.29211 4.39897 4.45126 4.51243 4.53429 4.62875 4.80547 5.09412 5.12991 5.31922 5.54583 5.60923 5.69877 5.83565 5.86425 6.11816 6.14228 6.76105 6.80093 7.54295 8.57047 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.016468 B = 0.003239 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.835803 B = 8642.627308 C = 9738.007839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.015 3.985 3 Si 0.965 3.035 4 H -0.264 1.264 5 H -0.264 1.264 6 H -0.270 1.270 7 C -0.400 4.400 8 H 0.085 0.915 9 O -0.247 6.247 10 C 0.117 3.883 11 C -0.224 4.224 12 C -0.075 4.075 13 C -0.156 4.156 14 C -0.078 4.078 15 C 0.167 3.833 16 N -0.569 5.569 17 C 0.539 3.461 18 O -0.467 6.467 19 C 0.053 3.947 20 H 0.169 0.831 21 C -0.050 4.050 22 S -0.256 6.256 23 C 0.199 3.801 24 N -0.636 5.636 25 C 0.729 3.271 26 O -0.560 6.560 27 C -0.165 4.165 28 H 0.286 0.714 29 H 0.113 0.887 30 H 0.146 0.854 31 H 0.148 0.852 32 H 0.106 0.894 33 H 0.136 0.864 34 H 0.158 0.842 35 H 0.109 0.891 36 H 0.121 0.879 37 H 0.126 0.874 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.936 -12.740 6.916 27.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.184 4.184 3 Si 0.787 3.213 4 H -0.189 1.189 5 H -0.188 1.188 6 H -0.195 1.195 7 C -0.476 4.476 8 H 0.103 0.897 9 O -0.154 6.154 10 C 0.068 3.932 11 C -0.243 4.243 12 C -0.093 4.093 13 C -0.175 4.175 14 C -0.079 4.079 15 C 0.047 3.953 16 N -0.313 5.313 17 C 0.325 3.675 18 O -0.336 6.336 19 C -0.057 4.057 20 H 0.186 0.814 21 C -0.199 4.199 22 S -0.030 6.030 23 C -0.031 4.031 24 N -0.377 5.377 25 C 0.430 3.570 26 O -0.434 6.434 27 C -0.185 4.185 28 H 0.095 0.905 29 H 0.131 0.869 30 H 0.164 0.836 31 H 0.166 0.834 32 H 0.125 0.875 33 H 0.154 0.846 34 H 0.176 0.824 35 H 0.127 0.873 36 H 0.139 0.861 37 H 0.144 0.856 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 24.574 -12.220 7.303 28.399 hybrid contribution -1.612 1.138 -0.882 2.161 sum 22.962 -11.083 6.420 26.292 Atomic orbital electron populations 1.69713 1.06703 1.29626 1.49993 1.25199 0.95823 1.01869 0.95521 0.85307 0.78627 0.77947 0.79388 1.18913 1.18797 1.19523 1.20726 0.77937 0.96241 1.52717 0.89748 1.83542 1.21446 1.27399 1.83048 1.19585 0.92852 0.85373 0.95390 1.21403 1.00455 0.93102 1.09367 1.21157 0.95177 0.96450 0.96516 1.21036 0.93311 0.97983 1.05132 1.19747 0.95504 0.91952 1.00673 1.20670 0.87401 1.06901 0.80283 1.46680 1.57411 1.07575 1.19670 1.20744 0.76116 0.83917 0.86740 1.90812 1.50216 1.20290 1.72278 1.23686 1.00702 0.83059 0.98221 0.81413 1.24525 0.92118 1.01673 1.01588 1.88341 1.50364 1.12014 1.52263 1.24034 0.93056 0.98158 0.87895 1.48599 1.56850 1.09347 1.22905 1.15323 0.77942 0.84238 0.79451 1.91016 1.59839 1.19162 1.73374 1.20285 0.90741 0.98803 1.08669 0.90469 0.86923 0.83592 0.83413 0.87542 0.84613 0.82406 0.87261 0.86109 0.85597 0.86796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.32 13.96 21.61 0.30 -55.02 16 2 C 0.01 0.87 5.49 84.83 0.47 1.33 16 3 Si 0.96 46.83 28.62 68.60 1.96 48.79 16 4 H -0.26 -12.31 7.11 99.48 0.71 -11.61 16 5 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 6 H -0.27 -13.49 7.11 99.48 0.71 -12.78 16 7 C -0.40 -23.93 9.95 67.92 0.68 -23.25 16 8 H 0.09 5.22 5.44 -2.91 -0.02 5.20 16 9 O -0.25 -13.87 8.59 -22.74 -0.20 -14.07 16 10 C 0.12 5.62 6.65 22.58 0.15 5.77 16 11 C -0.22 -9.78 9.17 22.39 0.21 -9.57 16 12 C -0.08 -2.51 10.04 22.25 0.22 -2.29 16 13 C -0.16 -4.56 9.70 22.30 0.22 -4.34 16 14 C -0.08 -2.42 5.46 -19.88 -0.11 -2.53 16 15 C 0.17 3.89 5.82 85.63 0.50 4.39 16 16 N -0.57 -12.88 2.60 -777.53 -2.02 -14.90 16 17 C 0.54 9.95 7.59 87.74 0.67 10.62 16 18 O -0.47 -9.83 17.76 -2.88 -0.05 -9.88 16 19 C 0.05 0.68 3.73 44.74 0.17 0.85 16 20 H 0.17 1.56 8.14 -2.39 -0.02 1.54 16 21 C -0.05 -0.41 7.04 72.64 0.51 0.10 16 22 S -0.26 -2.79 23.37 -56.49 -1.32 -4.11 16 23 C 0.20 2.44 8.21 127.55 1.05 3.49 16 24 N -0.64 -11.33 3.76 -821.16 -3.08 -14.41 16 25 C 0.73 18.72 8.59 179.43 1.54 20.26 16 26 O -0.56 -19.33 17.53 -3.82 -0.07 -19.40 16 27 C -0.17 -6.70 9.65 22.39 0.22 -6.49 16 28 H 0.29 15.74 8.31 -92.71 -0.77 14.97 16 29 H 0.11 5.37 5.64 -2.91 -0.02 5.35 16 30 H 0.15 3.92 8.06 -2.91 -0.02 3.89 16 31 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 32 H 0.11 2.47 7.85 -2.39 -0.02 2.45 16 33 H 0.14 2.36 7.93 -2.39 -0.02 2.34 16 34 H 0.16 0.58 8.14 -2.38 -0.02 0.56 16 35 H 0.11 0.91 8.05 -2.39 -0.02 0.89 16 36 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.11 4.80 8.06 -2.91 -0.02 4.77 16 Total: -1.00 -75.35 344.54 3.12 -72.23 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 1.11 Total: 12.43 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: 6.48 Total: -1.67 kcal Atomic # 7 Polarization: -79.52 SS G_CDS: -4.80 Total: -84.32 kcal Atomic # 8 Polarization: -43.04 SS G_CDS: -0.31 Total: -43.35 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 1.96 Total: 48.79 kcal Atomic # 16 Polarization: -2.79 SS G_CDS: -1.32 Total: -4.11 kcal Total: -75.35 3.12 -72.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332718292.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.454 kcal (2) G-P(sol) polarization free energy of solvation -75.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds