Wall clock time and date at job start Tue Mar 31 2020 19:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86804 * 119.99604 * 2 1 4 4 H 1.48497 * 109.47123 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46788 * 300.00320 * 3 2 1 6 6 H 1.48501 * 109.46857 * 59.99974 * 3 2 1 7 7 C 1.38645 * 120.00568 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00851 * 179.97438 * 7 2 1 9 9 O 1.34834 * 119.99973 * 359.97438 * 7 2 1 10 10 C 1.35746 * 117.00111 * 185.05712 * 9 7 2 11 11 C 1.38895 * 120.06911 * 354.49160 * 10 9 7 12 12 C 1.38083 * 119.92936 * 179.97438 * 11 10 9 13 13 C 1.38324 * 120.06880 * 359.74741 * 12 11 10 14 14 C 1.38279 * 120.14017 * 0.50796 * 13 12 11 15 15 C 1.50697 * 119.96678 * 179.76469 * 14 13 12 16 16 N 1.46493 * 109.47102 * 269.72674 * 15 14 13 17 17 C 1.34956 * 124.20165 * 90.00096 * 16 15 14 18 18 O 1.21227 * 127.26451 * 357.15932 * 17 16 15 19 19 C 1.51044 * 105.47392 * 177.13281 * 17 16 15 20 20 H 1.08999 * 111.63751 * 247.52132 * 19 17 16 21 21 C 1.54948 * 110.44008 * 121.94359 * 19 17 16 22 22 S 1.83986 * 100.47933 * 205.12689 * 21 19 17 23 23 C 1.83477 * 96.21357 * 21.69977 * 22 21 19 24 24 N 1.47607 * 104.21739 * 4.25188 * 23 22 21 25 25 C 1.33938 * 124.19950 * 270.02278 * 16 15 14 26 26 O 1.21535 * 123.84488 * 355.97114 * 25 16 15 27 27 C 1.38126 * 120.06387 * 359.49062 * 14 13 12 28 28 H 0.96992 * 120.00208 * 359.97438 * 1 2 3 29 29 H 1.07995 * 120.03842 * 0.02562 * 11 10 9 30 30 H 1.08004 * 119.96649 * 179.97438 * 12 11 10 31 31 H 1.08008 * 119.93034 * 180.27918 * 13 12 11 32 32 H 1.09001 * 109.46850 * 149.72246 * 15 14 13 33 33 H 1.08998 * 109.47263 * 29.72962 * 15 14 13 34 34 H 1.09000 * 111.20792 * 322.93640 * 21 19 17 35 35 H 1.09004 * 111.20865 * 87.31746 * 21 19 17 36 36 H 1.09003 * 110.48423 * 245.56264 * 23 22 21 37 37 H 1.09000 * 110.48661 * 122.93529 * 23 22 21 38 38 H 1.08005 * 120.03058 * 180.23003 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3466 -0.0006 5 1 1.8906 2.3965 -1.2125 6 1 1.8907 2.3965 1.2125 7 6 2.0090 -1.2006 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3349 -2.3684 -0.0005 10 6 2.0703 -3.5045 0.1055 11 6 3.4576 -3.4392 0.0926 12 6 4.2028 -4.5966 0.2012 13 6 3.5691 -5.8196 0.3281 14 6 2.1881 -5.8884 0.3360 15 6 1.5017 -7.2234 0.4690 16 7 1.2724 -7.7894 -0.8625 17 6 2.1473 -8.5890 -1.5079 18 8 3.2506 -8.9234 -1.1329 19 6 1.4617 -8.9800 -2.7957 20 1 1.2180 -10.0423 -2.8148 21 6 2.3168 -8.5532 -4.0153 22 16 1.0115 -8.4030 -5.3031 23 6 -0.3912 -8.1880 -4.1401 24 7 0.2455 -8.1394 -2.8093 25 6 0.1685 -7.5773 -1.5908 26 8 -0.7931 -6.9483 -1.1950 27 6 1.4371 -4.7342 0.2277 28 1 -0.4850 0.8400 0.0004 29 1 3.9531 -2.4842 -0.0014 30 1 5.2817 -4.5465 0.1909 31 1 4.1542 -6.7230 0.4174 32 1 0.5465 -7.0917 0.9774 33 1 2.1311 -7.8994 1.0478 34 1 2.8074 -7.5962 -3.8373 35 1 3.0424 -9.3234 -4.2770 36 1 -1.0742 -9.0350 -4.2055 37 1 -0.9175 -7.2558 -4.3453 38 1 0.3584 -4.7883 0.2377 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332718318.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:52 Heat of formation + Delta-G solvation = -10.539822 kcal Electronic energy + Delta-G solvation = -26170.942509 eV Core-core repulsion = 22300.544327 eV Total energy + Delta-G solvation = -3870.398182 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.70595 -39.12182 -38.76579 -37.31029 -36.63734 -35.37930 -32.34590 -31.58570 -31.09840 -29.33068 -28.30039 -26.08614 -25.30534 -24.82617 -22.37588 -21.64193 -21.29835 -20.35582 -18.17935 -17.69293 -17.52999 -17.01430 -16.91583 -16.73479 -15.65264 -15.34237 -15.13570 -15.05506 -14.63780 -14.54750 -14.37150 -14.02889 -13.69839 -13.61227 -13.43773 -13.03300 -12.82113 -12.67426 -12.55620 -12.04558 -11.66204 -11.59533 -11.36037 -11.09694 -10.94004 -10.70731 -10.63589 -10.47222 -10.43275 -9.89796 -9.56253 -9.35919 -8.87964 -8.28356 -8.24935 -7.30970 -6.46856 -4.06502 1.04041 1.17318 1.43002 1.66462 2.09558 2.29703 2.76152 2.79914 3.11020 3.12159 3.17879 3.60290 3.80904 3.94035 4.26239 4.41343 4.49507 4.73856 4.81286 4.86748 4.96059 5.07608 5.10723 5.14222 5.31114 5.45600 5.60783 5.66512 5.90171 6.04495 6.09669 6.29334 6.54774 6.79446 6.88698 7.01437 7.09013 7.18685 7.28479 7.37811 7.71754 7.82492 7.97057 8.98115 9.67559 10.70905 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.014568 B = 0.003289 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.499137 B = 8510.965899 C = 9177.349345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.393 4.393 8 H 0.092 0.908 9 O -0.175 6.175 10 C 0.149 3.851 11 C -0.222 4.222 12 C -0.078 4.078 13 C -0.189 4.189 14 C -0.087 4.087 15 C 0.166 3.834 16 N -0.564 5.564 17 C 0.535 3.465 18 O -0.455 6.455 19 C 0.048 3.952 20 H 0.146 0.854 21 C -0.060 4.060 22 S -0.258 6.258 23 C 0.205 3.795 24 N -0.637 5.637 25 C 0.733 3.267 26 O -0.512 6.512 27 C -0.163 4.163 28 H 0.270 0.730 29 H 0.128 0.872 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.109 0.891 35 H 0.132 0.868 36 H 0.110 0.890 37 H 0.118 0.882 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.230 -19.498 -6.461 20.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.470 4.470 8 H 0.110 0.890 9 O -0.079 6.079 10 C 0.095 3.905 11 C -0.242 4.242 12 C -0.097 4.097 13 C -0.209 4.209 14 C -0.088 4.088 15 C 0.047 3.953 16 N -0.309 5.309 17 C 0.320 3.680 18 O -0.324 6.324 19 C -0.062 4.062 20 H 0.163 0.837 21 C -0.209 4.209 22 S -0.032 6.032 23 C -0.026 4.026 24 N -0.379 5.379 25 C 0.435 3.565 26 O -0.382 6.382 27 C -0.183 4.183 28 H 0.080 0.920 29 H 0.146 0.854 30 H 0.127 0.873 31 H 0.128 0.872 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.127 0.873 35 H 0.150 0.850 36 H 0.128 0.872 37 H 0.136 0.864 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.670 -18.990 -7.214 20.489 hybrid contribution 0.504 0.998 1.093 1.564 sum 3.174 -17.992 -6.122 19.268 Atomic orbital electron populations 1.70055 1.05960 1.27624 1.45783 1.25300 0.95843 0.98843 0.96487 0.85647 0.79120 0.80350 0.78303 1.19093 1.20109 1.20072 1.21376 0.91808 0.80793 1.52986 0.89023 1.83995 1.34226 1.11377 1.78280 1.19310 0.90227 0.88100 0.92884 1.21258 0.93834 0.99098 1.10015 1.20736 0.98565 0.92225 0.98146 1.20516 0.93216 0.97324 1.09831 1.19347 0.93669 0.92763 1.03057 1.20634 1.02506 0.92872 0.79286 1.46701 1.17391 1.46958 1.19826 1.20423 0.84706 0.77580 0.85322 1.90806 1.16511 1.54198 1.70853 1.23447 0.87470 1.00101 0.95200 0.83689 1.24470 0.97741 1.07282 0.91449 1.88258 1.04156 1.96502 1.14297 1.23834 0.94729 1.07398 0.76657 1.48537 1.28677 1.49031 1.11685 1.15167 0.83019 0.79022 0.79291 1.91044 1.32383 1.42114 1.72627 1.20155 0.99706 0.89809 1.08588 0.92006 0.85435 0.87251 0.87196 0.87685 0.87894 0.87297 0.84976 0.87180 0.86365 0.86036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.45 13.67 55.48 0.76 -24.69 16 2 C 0.04 1.10 5.49 -17.52 -0.10 1.01 16 3 Si 0.94 20.60 29.55 -169.99 -5.02 15.57 16 4 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.39 -11.07 9.49 30.88 0.29 -10.78 16 8 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 9 O -0.18 -5.08 9.76 0.05 0.00 -5.08 16 10 C 0.15 3.64 6.65 -39.11 -0.26 3.38 16 11 C -0.22 -4.85 9.17 -39.40 -0.36 -5.21 16 12 C -0.08 -1.44 10.04 -39.61 -0.40 -1.84 16 13 C -0.19 -3.28 9.70 -39.53 -0.38 -3.66 16 14 C -0.09 -1.55 5.46 -104.65 -0.57 -2.12 16 15 C 0.17 2.32 5.84 -5.20 -0.03 2.29 16 16 N -0.56 -7.57 2.60 -122.19 -0.32 -7.88 16 17 C 0.54 6.23 7.59 -10.74 -0.08 6.14 16 18 O -0.46 -6.05 17.79 5.60 0.10 -5.95 16 19 C 0.05 0.42 3.72 -67.15 -0.25 0.17 16 20 H 0.15 0.81 8.14 -51.93 -0.42 0.39 16 21 C -0.06 -0.48 7.05 38.19 0.27 -0.21 16 22 S -0.26 -2.22 23.39 -107.50 -2.51 -4.74 16 23 C 0.21 1.71 8.22 60.45 0.50 2.20 16 24 N -0.64 -6.93 3.75 -173.37 -0.65 -7.58 16 25 C 0.73 10.59 8.60 -88.00 -0.76 9.84 16 26 O -0.51 -9.32 17.47 5.33 0.09 -9.22 16 27 C -0.16 -3.52 9.65 -39.39 -0.38 -3.90 16 28 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.13 2.78 5.64 -52.49 -0.30 2.48 16 30 H 0.11 1.70 8.06 -52.48 -0.42 1.27 16 31 H 0.11 1.70 8.06 -52.48 -0.42 1.27 16 32 H 0.10 1.43 7.77 -51.93 -0.40 1.02 16 33 H 0.10 1.20 7.98 -51.93 -0.41 0.79 16 34 H 0.11 1.05 8.05 -51.93 -0.42 0.63 16 35 H 0.13 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.12 2.72 8.06 -52.48 -0.42 2.30 16 LS Contribution 345.65 15.07 5.21 5.21 Total: -1.00 -34.12 345.65 -8.75 -42.87 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -3.90 Total: 4.18 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -2.51 Total: -2.69 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: -0.21 Total: -40.15 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: 0.19 Total: -20.25 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: -2.22 SS G_CDS: -2.51 Total: -4.74 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.12 -8.75 -42.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332718318.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.331 kcal (2) G-P(sol) polarization free energy of solvation -34.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds