Wall clock time and date at job start Tue Mar 31 2020 19:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86804 * 119.99604 * 2 1 4 4 H 1.48497 * 109.47123 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46788 * 300.00320 * 3 2 1 6 6 H 1.48501 * 109.46857 * 59.99974 * 3 2 1 7 7 C 1.38645 * 120.00568 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00851 * 179.97438 * 7 2 1 9 9 O 1.34834 * 119.99973 * 359.97438 * 7 2 1 10 10 C 1.35746 * 117.00111 * 185.05712 * 9 7 2 11 11 C 1.38895 * 120.06911 * 354.49160 * 10 9 7 12 12 C 1.38083 * 119.92936 * 179.97438 * 11 10 9 13 13 C 1.38324 * 120.06880 * 359.74741 * 12 11 10 14 14 C 1.38279 * 120.14017 * 0.50796 * 13 12 11 15 15 C 1.50697 * 119.96678 * 179.76469 * 14 13 12 16 16 N 1.46493 * 109.47102 * 269.72674 * 15 14 13 17 17 C 1.34956 * 124.20165 * 90.00096 * 16 15 14 18 18 O 1.21227 * 127.26451 * 357.15932 * 17 16 15 19 19 C 1.51044 * 105.47392 * 177.13281 * 17 16 15 20 20 H 1.08999 * 111.63751 * 247.52132 * 19 17 16 21 21 C 1.54948 * 110.44008 * 121.94359 * 19 17 16 22 22 S 1.83986 * 100.47933 * 205.12689 * 21 19 17 23 23 C 1.83477 * 96.21357 * 21.69977 * 22 21 19 24 24 N 1.47607 * 104.21739 * 4.25188 * 23 22 21 25 25 C 1.33938 * 124.19950 * 270.02278 * 16 15 14 26 26 O 1.21535 * 123.84488 * 355.97114 * 25 16 15 27 27 C 1.38126 * 120.06387 * 359.49062 * 14 13 12 28 28 H 0.96992 * 120.00208 * 359.97438 * 1 2 3 29 29 H 1.07995 * 120.03842 * 0.02562 * 11 10 9 30 30 H 1.08004 * 119.96649 * 179.97438 * 12 11 10 31 31 H 1.08008 * 119.93034 * 180.27918 * 13 12 11 32 32 H 1.09001 * 109.46850 * 149.72246 * 15 14 13 33 33 H 1.08998 * 109.47263 * 29.72962 * 15 14 13 34 34 H 1.09000 * 111.20792 * 322.93640 * 21 19 17 35 35 H 1.09004 * 111.20865 * 87.31746 * 21 19 17 36 36 H 1.09003 * 110.48423 * 245.56264 * 23 22 21 37 37 H 1.09000 * 110.48661 * 122.93529 * 23 22 21 38 38 H 1.08005 * 120.03058 * 180.23003 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3466 -0.0006 5 1 1.8906 2.3965 -1.2125 6 1 1.8907 2.3965 1.2125 7 6 2.0090 -1.2006 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3349 -2.3684 -0.0005 10 6 2.0703 -3.5045 0.1055 11 6 3.4576 -3.4392 0.0926 12 6 4.2028 -4.5966 0.2012 13 6 3.5691 -5.8196 0.3281 14 6 2.1881 -5.8884 0.3360 15 6 1.5017 -7.2234 0.4690 16 7 1.2724 -7.7894 -0.8625 17 6 2.1473 -8.5890 -1.5079 18 8 3.2506 -8.9234 -1.1329 19 6 1.4617 -8.9800 -2.7957 20 1 1.2180 -10.0423 -2.8148 21 6 2.3168 -8.5532 -4.0153 22 16 1.0115 -8.4030 -5.3031 23 6 -0.3912 -8.1880 -4.1401 24 7 0.2455 -8.1394 -2.8093 25 6 0.1685 -7.5773 -1.5908 26 8 -0.7931 -6.9483 -1.1950 27 6 1.4371 -4.7342 0.2277 28 1 -0.4850 0.8400 0.0004 29 1 3.9531 -2.4842 -0.0014 30 1 5.2817 -4.5465 0.1909 31 1 4.1542 -6.7230 0.4174 32 1 0.5465 -7.0917 0.9774 33 1 2.1311 -7.8994 1.0478 34 1 2.8074 -7.5962 -3.8373 35 1 3.0424 -9.3234 -4.2770 36 1 -1.0742 -9.0350 -4.2055 37 1 -0.9175 -7.2558 -4.3453 38 1 0.3584 -4.7883 0.2377 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332718318.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:52 Heat of formation + Delta-G solvation = -33.362930 kcal Electronic energy + Delta-G solvation = -26171.932193 eV Core-core repulsion = 22300.544327 eV Total energy + Delta-G solvation = -3871.387866 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.69689 -40.85987 -39.81950 -38.69916 -37.95128 -36.56423 -34.35134 -32.95479 -31.86504 -30.98126 -29.45397 -27.55013 -26.87906 -25.84894 -23.53479 -23.02049 -22.78002 -21.51822 -19.72735 -19.08684 -18.63672 -18.42801 -17.82601 -17.72177 -16.88133 -16.61152 -16.47185 -16.22809 -16.10328 -15.96319 -15.56488 -15.44116 -15.12629 -14.95377 -14.54730 -14.25507 -14.08156 -13.69708 -13.65603 -13.36010 -13.16016 -13.10223 -12.72739 -12.65657 -12.44758 -12.32214 -12.11112 -11.65511 -11.40288 -11.33622 -10.99176 -10.85881 -10.42631 -9.84421 -9.10196 -8.95016 -8.50393 -6.20163 0.11446 0.28044 0.41895 0.62406 0.75447 1.00698 1.32641 1.41437 1.51653 1.72936 1.85448 2.14570 2.74756 2.79716 3.05514 3.09773 3.34173 3.53046 3.75647 3.78579 3.94717 4.08380 4.16930 4.23409 4.24758 4.28586 4.39758 4.47631 4.49524 4.52938 4.65594 4.90667 5.06952 5.10209 5.18402 5.54892 5.61946 5.64138 5.86140 5.97444 6.09530 6.13528 6.75245 6.93457 7.73670 8.73110 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.014568 B = 0.003289 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.499137 B = 8510.965899 C = 9177.349345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.023 4.023 3 Si 1.021 2.979 4 H -0.249 1.249 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.416 4.416 8 H 0.104 0.896 9 O -0.234 6.234 10 C 0.110 3.890 11 C -0.231 4.231 12 C -0.071 4.071 13 C -0.164 4.164 14 C -0.075 4.075 15 C 0.166 3.834 16 N -0.568 5.568 17 C 0.537 3.463 18 O -0.466 6.466 19 C 0.059 3.941 20 H 0.188 0.812 21 C -0.055 4.055 22 S -0.263 6.263 23 C 0.201 3.799 24 N -0.637 5.637 25 C 0.728 3.272 26 O -0.563 6.563 27 C -0.179 4.179 28 H 0.273 0.727 29 H 0.123 0.877 30 H 0.151 0.849 31 H 0.147 0.853 32 H 0.102 0.898 33 H 0.137 0.863 34 H 0.090 0.910 35 H 0.164 0.836 36 H 0.144 0.856 37 H 0.107 0.893 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.258 -22.352 -7.156 24.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.221 4.221 3 Si 0.840 3.160 4 H -0.172 1.172 5 H -0.193 1.193 6 H -0.192 1.192 7 C -0.492 4.492 8 H 0.121 0.879 9 O -0.140 6.140 10 C 0.060 3.940 11 C -0.250 4.250 12 C -0.089 4.089 13 C -0.183 4.183 14 C -0.076 4.076 15 C 0.047 3.953 16 N -0.313 5.313 17 C 0.323 3.677 18 O -0.335 6.335 19 C -0.050 4.050 20 H 0.205 0.795 21 C -0.205 4.205 22 S -0.037 6.037 23 C -0.029 4.029 24 N -0.378 5.378 25 C 0.430 3.570 26 O -0.437 6.437 27 C -0.199 4.199 28 H 0.082 0.918 29 H 0.140 0.860 30 H 0.168 0.832 31 H 0.165 0.835 32 H 0.120 0.880 33 H 0.155 0.845 34 H 0.109 0.891 35 H 0.182 0.818 36 H 0.162 0.838 37 H 0.125 0.875 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.755 -21.932 -7.955 24.030 hybrid contribution -0.325 1.523 1.277 2.014 sum 5.430 -20.409 -6.678 22.150 Atomic orbital electron populations 1.70210 1.08170 1.28808 1.48733 1.26652 0.96844 1.02871 0.95722 0.84503 0.78300 0.74606 0.78603 1.17210 1.19349 1.19240 1.21902 0.92590 0.81324 1.53349 0.87862 1.83964 1.36043 1.12652 1.81367 1.19864 0.91744 0.87818 0.94592 1.21372 0.92799 1.00483 1.10383 1.21180 1.00478 0.91101 0.96138 1.20997 0.92926 0.98303 1.06108 1.19736 0.94190 0.93193 1.00490 1.20668 1.02822 0.91480 0.80378 1.46676 1.17661 1.47286 1.19688 1.20818 0.84266 0.76691 0.85901 1.90804 1.16844 1.54485 1.71382 1.23728 0.86051 1.01685 0.93543 0.79481 1.24539 0.97805 1.07468 0.90643 1.88367 1.04452 1.96424 1.14440 1.24122 0.95105 1.08439 0.75258 1.48596 1.29616 1.48425 1.11184 1.15368 0.82683 0.78678 0.80317 1.91015 1.34249 1.44491 1.73953 1.20231 0.99075 0.90592 1.09988 0.91805 0.85972 0.83172 0.83488 0.87955 0.84476 0.89096 0.81812 0.83816 0.87450 0.88333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.01 13.67 21.61 0.30 -57.71 16 2 C -0.02 -1.36 5.49 84.83 0.47 -0.89 16 3 Si 1.02 43.46 29.55 68.60 2.03 45.49 16 4 H -0.25 -9.69 7.11 99.48 0.71 -8.99 16 5 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 6 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 7 C -0.42 -24.73 9.49 67.92 0.64 -24.08 16 8 H 0.10 5.59 5.20 -2.91 -0.02 5.58 16 9 O -0.23 -14.59 9.76 -22.73 -0.22 -14.81 16 10 C 0.11 5.68 6.65 22.58 0.15 5.83 16 11 C -0.23 -10.12 9.17 22.39 0.21 -9.91 16 12 C -0.07 -2.41 10.04 22.25 0.22 -2.19 16 13 C -0.16 -5.11 9.70 22.30 0.22 -4.89 16 14 C -0.07 -2.58 5.46 -19.88 -0.11 -2.69 16 15 C 0.17 4.37 5.84 85.63 0.50 4.87 16 16 N -0.57 -14.27 2.60 -777.56 -2.02 -16.29 16 17 C 0.54 10.73 7.59 87.74 0.67 11.39 16 18 O -0.47 -10.41 17.79 -2.87 -0.05 -10.46 16 19 C 0.06 0.81 3.72 44.76 0.17 0.98 16 20 H 0.19 1.11 8.14 -2.39 -0.02 1.09 16 21 C -0.06 -0.70 7.05 72.65 0.51 -0.19 16 22 S -0.26 -3.89 23.39 -56.49 -1.32 -5.22 16 23 C 0.20 2.99 8.22 127.56 1.05 4.04 16 24 N -0.64 -12.80 3.75 -820.93 -3.08 -15.88 16 25 C 0.73 20.76 8.60 179.43 1.54 22.31 16 26 O -0.56 -21.41 17.47 -3.83 -0.07 -21.48 16 27 C -0.18 -8.11 9.65 22.39 0.22 -7.89 16 28 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 29 H 0.12 5.40 5.64 -2.91 -0.02 5.38 16 30 H 0.15 3.91 8.06 -2.91 -0.02 3.89 16 31 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 32 H 0.10 2.78 7.77 -2.39 -0.02 2.76 16 33 H 0.14 2.68 7.98 -2.39 -0.02 2.66 16 34 H 0.09 1.53 8.05 -2.39 -0.02 1.51 16 35 H 0.16 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.14 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.10 4.84 8.06 -2.91 -0.02 4.81 16 Total: -1.00 -81.95 345.65 3.12 -78.82 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: 1.11 Total: 20.84 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: 6.45 Total: -3.32 kcal Atomic # 7 Polarization: -85.07 SS G_CDS: -4.81 Total: -89.88 kcal Atomic # 8 Polarization: -46.41 SS G_CDS: -0.34 Total: -46.75 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: -3.89 SS G_CDS: -1.32 Total: -5.22 kcal Total: -81.95 3.12 -78.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332718318.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.460 kcal (2) G-P(sol) polarization free energy of solvation -81.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds