Wall clock time and date at job start Tue Mar 31 2020 18:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48499 * 109.47264 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47375 * 300.00329 * 3 2 1 6 6 H 1.48506 * 109.47301 * 60.00327 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38110 * 119.92772 * 179.76614 * 11 10 9 13 13 C 1.38304 * 120.06594 * 0.48719 * 12 11 10 14 14 C 1.50698 * 119.92742 * 179.74699 * 13 12 11 15 15 N 1.46508 * 109.46930 * 270.02005 * 14 13 12 16 16 C 1.34776 * 119.99798 * 179.97438 * 15 14 13 17 17 O 1.21628 * 120.00159 * 0.02562 * 16 15 14 18 18 C 1.47267 * 119.99790 * 180.02562 * 16 15 14 19 19 C 1.35206 * 123.13939 * 179.73858 * 18 16 15 20 20 S 1.70943 * 108.82606 * 179.87048 * 19 18 16 21 21 C 1.70775 * 91.12726 * 0.32593 * 20 19 18 22 22 C 1.50707 * 124.71614 * 179.84338 * 21 20 19 23 23 O 1.42894 * 109.47000 * 269.95501 * 22 21 20 24 24 N 1.28636 * 110.55717 * 359.80497 * 21 20 19 25 25 C 1.38297 * 120.14055 * 359.76875 * 13 12 11 26 26 C 1.38101 * 120.07230 * 359.97438 * 25 13 12 27 27 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 28 28 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 29 29 H 1.07996 * 119.96227 * 180.23396 * 12 11 10 30 30 H 1.09003 * 109.47622 * 30.01908 * 14 13 12 31 31 H 1.09004 * 109.47221 * 150.02459 * 14 13 12 32 32 H 0.96994 * 120.00085 * 0.02562 * 15 14 13 33 33 H 1.08003 * 125.59216 * 359.97438 * 19 18 16 34 34 H 1.09000 * 109.46773 * 29.96017 * 22 21 20 35 35 H 1.09002 * 109.46343 * 149.95631 * 22 21 20 36 36 H 0.96703 * 113.99892 * 180.02562 * 23 22 21 37 37 H 1.07999 * 119.96698 * 179.97438 * 25 13 12 38 38 H 1.07992 * 120.03608 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8908 2.3964 -1.2124 6 1 1.8908 2.3964 1.2126 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8885 -0.3378 13 6 3.5686 -5.8202 -0.3255 14 6 4.3848 -7.0815 -0.4440 15 7 4.6432 -7.6233 0.8925 16 6 5.3594 -8.7563 1.0334 17 8 5.7915 -9.3288 0.0511 18 6 5.6186 -9.3012 2.3768 19 6 6.3239 -10.4346 2.5912 20 16 6.4039 -10.7245 4.2740 21 6 5.4834 -9.3220 4.5935 22 6 5.0891 -8.8491 5.9690 23 8 3.8316 -9.4248 6.3283 24 7 5.1743 -8.7250 3.4967 25 6 4.2024 -4.5970 -0.2043 26 6 3.4573 -3.4394 -0.0956 27 1 -0.4850 0.8400 0.0004 28 1 0.3579 -4.7892 -0.2301 29 1 1.6953 -6.8452 -0.4323 30 1 3.8358 -7.8156 -1.0337 31 1 5.3321 -6.8566 -0.9342 32 1 4.2983 -7.1670 1.6758 33 1 6.7660 -11.0543 1.8251 34 1 5.8478 -9.1545 6.6895 35 1 5.0045 -7.7623 5.9690 36 1 3.5149 -9.1631 7.2037 37 1 5.2812 -4.5470 -0.1945 38 1 3.9527 -2.4845 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362017895.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:15 Heat of formation + Delta-G solvation = -40.802710 kcal Electronic energy + Delta-G solvation = -24317.274158 eV Core-core repulsion = 20445.563679 eV Total energy + Delta-G solvation = -3871.710479 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.70177 -39.27128 -38.71558 -37.16925 -36.81473 -34.44482 -32.36332 -31.66840 -30.27735 -29.97468 -27.91515 -26.43057 -25.34005 -23.94569 -22.03786 -21.58895 -20.61564 -20.06745 -18.95751 -18.06250 -18.04790 -17.20733 -16.73888 -16.01756 -15.61490 -15.45579 -14.98501 -14.82814 -14.62686 -14.37285 -14.13201 -13.85075 -13.65428 -13.56993 -13.34872 -12.77722 -12.72749 -12.49728 -12.29258 -12.07917 -11.67623 -11.40608 -10.99458 -10.77499 -10.69285 -10.67675 -10.46718 -10.28916 -10.12182 -10.03564 -9.41292 -9.37141 -8.93211 -8.90578 -8.26118 -7.31266 -6.51969 -4.10656 0.13660 0.83578 1.23155 1.67177 2.08989 2.15548 3.07564 3.10234 3.15840 3.19733 3.29666 3.54979 3.91263 4.16292 4.46145 4.52574 4.73458 4.85749 4.91389 5.01848 5.03455 5.17591 5.25771 5.42745 5.53860 5.67794 5.81566 5.91525 6.14243 6.36557 6.46816 6.61910 6.82347 6.96947 7.04154 7.09868 7.16328 7.29042 7.36746 7.61868 7.73731 7.93046 8.16843 8.93537 9.62119 10.65737 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.015336 B = 0.002245 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.301303 B =12467.750021 C =13413.234851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.393 4.393 8 H 0.094 0.906 9 O -0.174 6.174 10 C 0.161 3.839 11 C -0.195 4.195 12 C -0.053 4.053 13 C -0.215 4.215 14 C 0.178 3.822 15 N -0.701 5.701 16 C 0.589 3.411 17 O -0.542 6.542 18 C 0.012 3.988 19 C -0.223 4.223 20 S 0.230 5.770 21 C 0.016 3.984 22 C 0.156 3.844 23 O -0.563 6.563 24 N -0.422 5.422 25 C -0.049 4.049 26 C -0.237 4.237 27 H 0.271 0.729 28 H 0.119 0.881 29 H 0.113 0.887 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.411 0.589 33 H 0.192 0.808 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.390 0.610 37 H 0.108 0.892 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.709 -18.694 12.035 25.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.469 4.469 8 H 0.111 0.889 9 O -0.076 6.076 10 C 0.107 3.893 11 C -0.214 4.214 12 C -0.072 4.072 13 C -0.216 4.216 14 C 0.056 3.944 15 N -0.351 5.351 16 C 0.372 3.628 17 O -0.421 6.421 18 C -0.124 4.124 19 C -0.366 4.366 20 S 0.486 5.514 21 C -0.263 4.263 22 C 0.075 3.925 23 O -0.369 6.369 24 N -0.139 5.139 25 C -0.068 4.068 26 C -0.256 4.256 27 H 0.081 0.919 28 H 0.137 0.863 29 H 0.131 0.869 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.248 0.752 33 H 0.209 0.791 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.239 0.761 37 H 0.126 0.874 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 12.742 -19.371 11.398 25.836 hybrid contribution 0.074 1.723 -0.036 1.724 sum 12.816 -17.648 11.363 24.593 Atomic orbital electron populations 1.70045 1.06006 1.27739 1.45610 1.25322 0.95860 0.98932 0.96389 0.85627 0.79156 0.80223 0.78318 1.19041 1.20067 1.20081 1.21407 0.91895 0.80723 1.52847 0.88873 1.83979 1.34507 1.11555 1.77582 1.19439 0.90314 0.88042 0.91539 1.20209 0.99677 0.90250 1.11264 1.20537 0.92739 0.96878 0.97005 1.19178 0.93584 0.93402 1.15464 1.20065 0.98781 0.92812 0.82760 1.46208 1.53030 1.24966 1.10904 1.17073 0.78818 0.81003 0.85918 1.90804 1.52524 1.60316 1.38413 1.20519 1.02776 0.95394 0.93694 1.26700 1.05458 1.02082 1.02324 1.82776 1.46802 1.24309 0.97468 1.26690 1.03368 0.97904 0.98373 1.20393 0.86556 0.98176 0.87405 1.86523 1.36616 1.73434 1.40368 1.66876 1.19175 1.30889 0.96977 1.20635 0.98382 0.91656 0.96153 1.21152 0.93768 0.98931 1.11748 0.91941 0.86337 0.86931 0.91226 0.91263 0.75238 0.79092 0.91024 0.89945 0.76061 0.87393 0.85396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.86 13.67 55.48 0.76 -24.10 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 20.19 29.55 -169.99 -5.02 15.16 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 6 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.39 -10.78 9.49 30.89 0.29 -10.49 16 8 H 0.09 2.37 5.20 -52.49 -0.27 2.09 16 9 O -0.17 -4.87 9.76 0.05 0.00 -4.87 16 10 C 0.16 3.82 6.65 -39.11 -0.26 3.56 16 11 C -0.19 -4.03 9.99 -39.39 -0.39 -4.42 16 12 C -0.05 -0.93 9.69 -39.60 -0.38 -1.31 16 13 C -0.21 -3.61 5.25 -104.58 -0.55 -4.16 16 14 C 0.18 2.64 5.80 -5.19 -0.03 2.61 16 15 N -0.70 -10.20 5.55 -62.61 -0.35 -10.55 16 16 C 0.59 8.85 7.80 -12.59 -0.10 8.75 16 17 O -0.54 -9.32 16.71 5.25 0.09 -9.24 16 18 C 0.01 0.15 6.70 -84.53 -0.57 -0.41 16 19 C -0.22 -2.28 10.62 29.65 0.31 -1.96 16 20 S 0.23 1.71 22.92 -107.50 -2.46 -0.76 16 21 C 0.02 0.16 6.97 -13.61 -0.09 0.06 16 22 C 0.16 1.04 7.62 36.01 0.27 1.31 16 23 O -0.56 -4.21 13.64 -35.23 -0.48 -4.69 16 24 N -0.42 -5.30 10.12 -8.51 -0.09 -5.39 16 25 C -0.05 -0.89 9.69 -39.61 -0.38 -1.27 16 26 C -0.24 -5.01 9.17 -39.39 -0.36 -5.37 16 27 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.12 2.38 8.06 -52.49 -0.42 1.95 16 29 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 30 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 31 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 32 H 0.41 5.93 7.98 -40.82 -0.33 5.61 16 33 H 0.19 1.69 8.03 -52.48 -0.42 1.27 16 34 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.39 0.89 9.12 45.56 0.42 1.31 16 37 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.13 2.72 5.64 -52.49 -0.30 2.42 16 LS Contribution 355.07 15.07 5.35 5.35 Total: -1.00 -34.38 355.07 -7.53 -41.91 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -2.99 Total: 9.30 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -2.34 Total: -12.13 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.33 Total: -40.04 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.39 Total: -18.80 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.16 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -2.46 Total: -0.76 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.38 -7.53 -41.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362017895.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.109 kcal (2) G-P(sol) polarization free energy of solvation -34.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds