Wall clock time and date at job start Tue Mar 31 2020 18:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48499 * 109.47264 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47375 * 300.00329 * 3 2 1 6 6 H 1.48506 * 109.47301 * 60.00327 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38110 * 119.92772 * 179.76614 * 11 10 9 13 13 C 1.38304 * 120.06594 * 0.48719 * 12 11 10 14 14 C 1.50698 * 119.92742 * 179.74699 * 13 12 11 15 15 N 1.46508 * 109.46930 * 270.02005 * 14 13 12 16 16 C 1.34776 * 119.99798 * 179.97438 * 15 14 13 17 17 O 1.21628 * 120.00159 * 0.02562 * 16 15 14 18 18 C 1.47267 * 119.99790 * 180.02562 * 16 15 14 19 19 C 1.35206 * 123.13939 * 179.73858 * 18 16 15 20 20 S 1.70943 * 108.82606 * 179.87048 * 19 18 16 21 21 C 1.70775 * 91.12726 * 0.32593 * 20 19 18 22 22 C 1.50707 * 124.71614 * 179.84338 * 21 20 19 23 23 O 1.42894 * 109.47000 * 269.95501 * 22 21 20 24 24 N 1.28636 * 110.55717 * 359.80497 * 21 20 19 25 25 C 1.38297 * 120.14055 * 359.76875 * 13 12 11 26 26 C 1.38101 * 120.07230 * 359.97438 * 25 13 12 27 27 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 28 28 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 29 29 H 1.07996 * 119.96227 * 180.23396 * 12 11 10 30 30 H 1.09003 * 109.47622 * 30.01908 * 14 13 12 31 31 H 1.09004 * 109.47221 * 150.02459 * 14 13 12 32 32 H 0.96994 * 120.00085 * 0.02562 * 15 14 13 33 33 H 1.08003 * 125.59216 * 359.97438 * 19 18 16 34 34 H 1.09000 * 109.46773 * 29.96017 * 22 21 20 35 35 H 1.09002 * 109.46343 * 149.95631 * 22 21 20 36 36 H 0.96703 * 113.99892 * 180.02562 * 23 22 21 37 37 H 1.07999 * 119.96698 * 179.97438 * 25 13 12 38 38 H 1.07992 * 120.03608 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8908 2.3964 -1.2124 6 1 1.8908 2.3964 1.2126 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8885 -0.3378 13 6 3.5686 -5.8202 -0.3255 14 6 4.3848 -7.0815 -0.4440 15 7 4.6432 -7.6233 0.8925 16 6 5.3594 -8.7563 1.0334 17 8 5.7915 -9.3288 0.0511 18 6 5.6186 -9.3012 2.3768 19 6 6.3239 -10.4346 2.5912 20 16 6.4039 -10.7245 4.2740 21 6 5.4834 -9.3220 4.5935 22 6 5.0891 -8.8491 5.9690 23 8 3.8316 -9.4248 6.3283 24 7 5.1743 -8.7250 3.4967 25 6 4.2024 -4.5970 -0.2043 26 6 3.4573 -3.4394 -0.0956 27 1 -0.4850 0.8400 0.0004 28 1 0.3579 -4.7892 -0.2301 29 1 1.6953 -6.8452 -0.4323 30 1 3.8358 -7.8156 -1.0337 31 1 5.3321 -6.8566 -0.9342 32 1 4.2983 -7.1670 1.6758 33 1 6.7660 -11.0543 1.8251 34 1 5.8478 -9.1545 6.6895 35 1 5.0045 -7.7623 5.9690 36 1 3.5149 -9.1631 7.2037 37 1 5.2812 -4.5470 -0.1945 38 1 3.9527 -2.4845 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362017895.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:15 Heat of formation + Delta-G solvation = -68.381638 kcal Electronic energy + Delta-G solvation = -24318.470070 eV Core-core repulsion = 20445.563679 eV Total energy + Delta-G solvation = -3872.906392 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.63002 -40.85813 -39.85786 -38.50552 -37.65914 -35.76682 -34.29391 -32.44521 -31.87464 -31.43191 -28.57808 -27.91139 -26.96685 -25.06888 -23.67833 -22.50539 -22.13576 -20.94707 -19.95448 -19.81221 -18.89538 -18.53694 -17.84320 -17.01588 -16.78232 -16.46562 -16.27657 -16.21482 -15.82466 -15.57186 -15.48280 -15.30852 -14.98464 -14.82023 -14.42021 -14.24540 -14.21086 -13.68385 -13.33202 -13.11300 -13.07073 -12.93852 -12.60203 -12.37524 -12.29307 -12.09632 -11.41479 -11.22401 -11.17484 -10.88312 -10.82197 -10.75021 -10.28938 -9.93511 -9.83770 -9.04531 -8.49556 -6.17860 -0.60650 0.18078 0.45207 0.54870 0.57546 0.77854 1.35299 1.42757 1.53478 2.16185 2.19467 2.22967 2.75531 2.87621 3.15404 3.46027 3.53982 3.80946 3.93845 3.99193 4.06846 4.14176 4.19002 4.28604 4.40769 4.53019 4.53312 4.65073 4.76707 4.79681 5.00614 5.12544 5.23311 5.29340 5.49062 5.66167 5.71376 6.00053 6.12031 6.22894 6.53902 6.85701 6.95179 7.03800 7.73908 8.73571 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.015336 B = 0.002245 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.301303 B =12467.750021 C =13413.234851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.022 4.022 3 Si 1.019 2.981 4 H -0.251 1.251 5 H -0.269 1.269 6 H -0.268 1.268 7 C -0.414 4.414 8 H 0.104 0.896 9 O -0.228 6.228 10 C 0.124 3.876 11 C -0.204 4.204 12 C -0.044 4.044 13 C -0.185 4.185 14 C 0.182 3.818 15 N -0.700 5.700 16 C 0.589 3.411 17 O -0.570 6.570 18 C -0.020 4.020 19 C -0.232 4.232 20 S 0.325 5.675 21 C -0.008 4.008 22 C 0.153 3.847 23 O -0.587 6.587 24 N -0.454 5.454 25 C -0.045 4.045 26 C -0.242 4.242 27 H 0.273 0.727 28 H 0.116 0.884 29 H 0.145 0.855 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.413 0.587 33 H 0.201 0.799 34 H 0.109 0.891 35 H 0.080 0.920 36 H 0.410 0.590 37 H 0.139 0.861 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.454 -20.921 13.315 29.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.220 4.220 3 Si 0.838 3.162 4 H -0.174 1.174 5 H -0.194 1.194 6 H -0.193 1.193 7 C -0.490 4.490 8 H 0.121 0.879 9 O -0.134 6.134 10 C 0.073 3.927 11 C -0.223 4.223 12 C -0.063 4.063 13 C -0.186 4.186 14 C 0.060 3.940 15 N -0.350 5.350 16 C 0.374 3.626 17 O -0.450 6.450 18 C -0.156 4.156 19 C -0.375 4.375 20 S 0.582 5.418 21 C -0.286 4.286 22 C 0.072 3.928 23 O -0.397 6.397 24 N -0.172 5.172 25 C -0.063 4.063 26 C -0.262 4.262 27 H 0.082 0.918 28 H 0.134 0.866 29 H 0.163 0.837 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.249 0.751 33 H 0.218 0.782 34 H 0.126 0.874 35 H 0.098 0.902 36 H 0.263 0.737 37 H 0.157 0.843 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 15.513 -21.651 12.719 29.515 hybrid contribution -0.624 1.957 -0.352 2.084 sum 14.889 -19.694 12.367 27.613 Atomic orbital electron populations 1.70184 1.08051 1.28852 1.48583 1.26602 0.96840 1.02772 0.95741 0.84522 0.78282 0.74798 0.78571 1.17407 1.19410 1.19279 1.21884 0.92591 0.81311 1.53196 0.87903 1.83950 1.36035 1.12645 1.80742 1.19970 0.91602 0.87945 0.93150 1.20434 1.00098 0.90389 1.11400 1.20876 0.93081 0.97048 0.95274 1.19476 0.93521 0.94066 1.11578 1.20020 0.98892 0.91722 0.83354 1.46076 1.53218 1.25150 1.10541 1.17345 0.78013 0.80529 0.86693 1.90777 1.53655 1.61031 1.39581 1.20290 1.05293 0.96941 0.93050 1.27022 1.04288 1.01259 1.04964 1.82430 1.43907 1.21356 0.94098 1.27326 1.03465 0.98979 0.98878 1.20602 0.87337 0.98138 0.86693 1.86454 1.37200 1.73797 1.42233 1.66859 1.20536 1.32269 0.97537 1.20936 0.99829 0.90767 0.94812 1.21238 0.93006 1.00014 1.11906 0.91751 0.86558 0.83697 0.90344 0.90390 0.75119 0.78205 0.87354 0.90175 0.73721 0.84317 0.86002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.98 13.67 21.62 0.30 -55.69 16 2 C -0.02 -1.22 5.49 84.84 0.47 -0.76 16 3 Si 1.02 42.39 29.55 68.60 2.03 44.41 16 4 H -0.25 -9.61 7.11 99.48 0.71 -8.91 16 5 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 6 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 7 C -0.41 -23.81 9.49 67.92 0.64 -23.17 16 8 H 0.10 5.42 5.20 -2.91 -0.02 5.41 16 9 O -0.23 -13.55 9.76 -22.72 -0.22 -13.77 16 10 C 0.12 6.10 6.65 22.58 0.15 6.25 16 11 C -0.20 -8.57 9.99 22.39 0.22 -8.34 16 12 C -0.04 -1.48 9.69 22.25 0.22 -1.27 16 13 C -0.19 -5.81 5.25 -19.84 -0.10 -5.91 16 14 C 0.18 4.93 5.80 85.63 0.50 5.43 16 15 N -0.70 -19.09 5.55 -470.23 -2.61 -21.70 16 16 C 0.59 16.92 7.80 86.62 0.68 17.59 16 17 O -0.57 -18.85 16.71 -4.12 -0.07 -18.92 16 18 C -0.02 -0.49 6.70 40.56 0.27 -0.22 16 19 C -0.23 -4.24 10.62 67.12 0.71 -3.53 16 20 S 0.32 3.75 22.92 -56.49 -1.29 2.45 16 21 C -0.01 -0.13 6.97 88.58 0.62 0.49 16 22 C 0.15 1.66 7.62 71.24 0.54 2.20 16 23 O -0.59 -7.51 13.64 -148.98 -2.03 -9.54 16 24 N -0.45 -10.77 10.12 -180.83 -1.83 -12.60 16 25 C -0.04 -1.53 9.69 22.25 0.22 -1.31 16 26 C -0.24 -10.34 9.17 22.39 0.21 -10.14 16 27 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 28 H 0.12 4.84 8.06 -2.91 -0.02 4.81 16 29 H 0.15 3.95 8.06 -2.91 -0.02 3.93 16 30 H 0.08 2.05 8.08 -2.39 -0.02 2.04 16 31 H 0.08 2.04 8.08 -2.39 -0.02 2.03 16 32 H 0.41 11.26 7.98 -92.71 -0.74 10.52 16 33 H 0.20 3.12 8.03 -2.91 -0.02 3.09 16 34 H 0.11 0.33 8.14 -2.39 -0.02 0.32 16 35 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.41 1.01 9.12 -74.06 -0.68 0.34 16 37 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 38 H 0.12 5.28 5.64 -2.91 -0.02 5.26 16 Total: -1.00 -79.40 355.07 -0.67 -80.07 By element: Atomic # 1 Polarization: 28.23 SS G_CDS: -0.27 Total: 27.97 kcal Atomic # 6 Polarization: -28.02 SS G_CDS: 5.33 Total: -22.68 kcal Atomic # 7 Polarization: -85.85 SS G_CDS: -4.14 Total: -89.99 kcal Atomic # 8 Polarization: -39.91 SS G_CDS: -2.32 Total: -42.23 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.41 kcal Atomic # 16 Polarization: 3.75 SS G_CDS: -1.29 Total: 2.45 kcal Total: -79.40 -0.67 -80.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362017895.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.689 kcal (2) G-P(sol) polarization free energy of solvation -79.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds