Wall clock time and date at job start Tue Mar 31 2020 18:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99763 * 2 1 4 4 H 1.48501 * 109.47187 * 239.99696 * 3 2 1 5 5 H 1.48505 * 109.47279 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47246 * 119.99955 * 3 2 1 7 7 C 1.37872 * 120.00366 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00563 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00075 * 0.02562 * 7 2 1 10 10 O 1.42899 * 110.63924 * 298.31173 * 9 7 2 11 11 C 1.55148 * 110.87775 * 175.06011 * 9 7 2 12 12 C 1.55123 * 101.48856 * 205.89889 * 11 9 7 13 13 N 1.47424 * 104.72626 * 37.29417 * 12 11 9 14 14 C 1.34771 * 125.64868 * 155.81825 * 13 12 11 15 15 O 1.21586 * 119.99753 * 179.69466 * 14 13 12 16 16 N 1.34774 * 120.00194 * 359.69083 * 14 13 12 17 17 C 1.39084 * 120.00073 * 180.02562 * 16 14 13 18 18 N 1.29896 * 125.65369 * 0.02703 * 17 16 14 19 19 N 1.26248 * 117.65706 * 179.97438 * 18 17 16 20 20 C 1.29495 * 116.58555 * 0.02562 * 19 18 17 21 21 C 1.50703 * 126.14339 * 179.97438 * 20 19 18 22 22 F 1.39904 * 109.46969 * 240.02447 * 21 20 19 23 23 F 1.39901 * 109.47086 * 120.02850 * 21 20 19 24 24 S 1.71306 * 125.65576 * 180.29871 * 17 16 14 25 25 C 1.47024 * 108.69745 * 335.55360 * 13 12 11 26 26 H 0.97003 * 120.00473 * 0.02562 * 1 2 3 27 27 H 0.96702 * 114.00579 * 61.68322 * 10 9 7 28 28 H 1.09008 * 111.00392 * 324.13767 * 11 9 7 29 29 H 1.09005 * 111.00600 * 87.98465 * 11 9 7 30 30 H 1.09003 * 110.50037 * 278.45084 * 12 11 9 31 31 H 1.09001 * 110.34344 * 156.06184 * 12 11 9 32 32 H 0.96994 * 120.00333 * 0.02562 * 16 14 13 33 33 H 1.09002 * 109.47152 * 0.02562 * 21 20 19 34 34 H 1.09002 * 109.87640 * 120.70473 * 25 13 12 35 35 H 1.08993 * 109.88158 * 241.70828 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 0.4496 -2.6180 1.1776 11 6 2.2256 -3.7000 -0.1236 12 6 1.3111 -4.7746 -0.7682 13 7 0.4619 -4.0263 -1.7128 14 6 -0.1445 -4.5406 -2.8009 15 8 -0.8291 -3.8279 -3.5092 16 7 0.0079 -5.8450 -3.1040 17 6 -0.6175 -6.3757 -4.2273 18 7 -1.3694 -5.7174 -5.0571 19 7 -1.8628 -6.3519 -6.0307 20 6 -1.5699 -7.6108 -6.1101 21 6 -2.0388 -8.5669 -7.1765 22 9 -2.7678 -9.6042 -6.5849 23 9 -0.9313 -9.0983 -7.8461 24 16 -0.5292 -8.0071 -4.7421 25 6 0.3811 -2.6274 -1.2676 26 1 -0.4851 0.8400 -0.0004 27 1 -0.2286 -1.9339 1.2625 28 1 3.0656 -3.4560 -0.7741 29 1 2.5742 -4.0234 0.8572 30 1 0.6976 -5.2592 -0.0086 31 1 1.9109 -5.5130 -1.3002 32 1 0.5538 -6.4137 -2.5388 33 1 -2.6729 -8.0364 -7.8868 34 1 0.7625 -1.9678 -2.0471 35 1 -0.6530 -2.3706 -1.0382 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365126970.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:58 Heat of formation + Delta-G solvation = -87.163697 kcal Electronic energy + Delta-G solvation = -25954.738021 eV Core-core repulsion = 21559.080400 eV Total energy + Delta-G solvation = -4395.657621 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.070 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.51646 -47.52739 -41.60455 -40.07258 -37.78598 -35.26577 -34.50140 -32.31912 -31.91672 -30.24968 -28.25750 -27.67411 -25.67281 -24.78198 -23.23236 -21.72836 -20.44266 -19.81729 -19.32018 -18.30755 -17.83246 -17.74604 -17.36150 -17.16657 -16.32414 -16.09024 -15.40975 -15.11557 -14.78913 -14.46703 -14.38268 -13.98921 -13.88009 -13.64642 -13.31486 -13.11049 -13.00213 -12.54564 -12.20992 -11.95247 -11.74143 -11.44958 -11.13339 -10.98370 -10.89684 -10.84435 -10.60428 -10.55245 -10.29751 -10.05984 -9.82585 -9.45566 -9.10819 -8.76271 -8.45991 -8.10880 -6.36539 -4.45845 -0.00904 0.10799 0.75163 2.24386 2.26652 2.86305 3.18560 3.24928 3.26104 3.34531 3.59115 3.75076 4.20824 4.24284 4.42483 4.54129 4.77409 4.90644 5.10497 5.42737 5.57140 5.75003 5.78147 5.84583 6.32074 6.39825 6.65130 6.70685 6.82552 7.13600 7.27154 7.64507 7.89570 7.97474 8.28699 8.56410 8.61779 9.18449 9.28748 10.71312 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.029639 B = 0.002487 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.473650 B =11253.715677 C =11658.659606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.072 3.928 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.250 3.750 10 O -0.584 6.584 11 C -0.114 4.114 12 C 0.094 3.906 13 N -0.617 5.617 14 C 0.704 3.296 15 O -0.525 6.525 16 N -0.631 5.631 17 C 0.279 3.721 18 N -0.269 5.269 19 N -0.173 5.173 20 C -0.117 4.117 21 C 0.369 3.631 22 F -0.186 7.186 23 F -0.186 7.186 24 S 0.157 5.843 25 C 0.120 3.880 26 H 0.272 0.728 27 H 0.384 0.616 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.421 0.579 33 H 0.151 0.849 34 H 0.070 0.930 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.175 -18.513 -8.353 20.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.578 4.578 8 H 0.085 0.915 9 C 0.209 3.791 10 O -0.393 6.393 11 C -0.152 4.152 12 C -0.029 4.029 13 N -0.355 5.355 14 C 0.403 3.597 15 O -0.396 6.396 16 N -0.285 5.285 17 C -0.091 4.091 18 N -0.116 5.116 19 N -0.013 5.013 20 C -0.399 4.399 21 C 0.311 3.689 22 F -0.167 7.167 23 F -0.167 7.167 24 S 0.396 5.604 25 C -0.001 4.001 26 H 0.082 0.918 27 H 0.234 0.766 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.260 0.740 33 H 0.168 0.832 34 H 0.089 0.911 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.567 -18.008 -8.760 20.034 hybrid contribution 0.422 1.029 0.277 1.146 sum -0.145 -16.979 -8.483 18.981 Atomic orbital electron populations 1.69667 1.06008 1.28278 1.49147 1.25077 0.95078 0.99873 0.93205 0.86434 0.79540 0.81970 0.78833 1.19987 1.21014 1.19948 1.21415 0.93653 0.89895 1.52881 0.91452 1.19495 0.86430 0.92126 0.81028 1.86106 1.51821 1.56704 1.44696 1.22767 0.97298 0.94762 1.00414 1.22469 0.93007 0.95420 0.91993 1.48096 1.49946 1.13596 1.23826 1.15564 0.81701 0.80254 0.82182 1.91086 1.41282 1.56926 1.50263 1.42473 1.50602 1.11426 1.24028 1.25915 0.96204 0.93297 0.93723 1.71752 1.12378 1.26721 1.00749 1.71415 1.14804 1.02249 1.12831 1.30212 1.08405 0.97730 1.03571 1.19334 0.81355 0.81116 0.87092 1.93071 1.77246 1.60841 1.85560 1.93070 1.55471 1.87614 1.80562 1.84784 1.47840 1.05981 1.21796 1.23118 1.02147 0.76055 0.98805 0.91767 0.76578 0.90186 0.90196 0.91216 0.92434 0.74041 0.83245 0.91118 0.91259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.07 10.96 55.43 0.61 -22.46 16 2 C 0.07 1.81 5.28 -17.82 -0.09 1.71 16 3 Si 0.91 19.94 29.54 -169.99 -5.02 14.92 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.54 -13.45 8.13 -34.44 -0.28 -13.73 16 8 H 0.07 1.64 7.78 -52.49 -0.41 1.24 16 9 C 0.25 5.64 0.85 -89.94 -0.08 5.56 16 10 O -0.58 -13.77 13.07 -35.23 -0.46 -14.23 16 11 C -0.11 -2.04 6.24 -24.47 -0.15 -2.20 16 12 C 0.09 1.42 6.58 -2.41 -0.02 1.40 16 13 N -0.62 -11.68 3.32 -176.10 -0.59 -12.27 16 14 C 0.70 13.45 8.45 -86.93 -0.73 12.72 16 15 O -0.53 -12.43 15.35 5.29 0.08 -12.34 16 16 N -0.63 -8.93 5.37 -17.32 -0.09 -9.02 16 17 C 0.28 4.02 8.14 -87.05 -0.71 3.32 16 18 N -0.27 -4.75 9.73 29.97 0.29 -4.46 16 19 N -0.17 -2.59 11.65 33.58 0.39 -2.20 16 20 C -0.12 -1.32 7.23 -13.26 -0.10 -1.42 16 21 C 0.37 2.99 5.86 36.01 0.21 3.21 16 22 F -0.19 -1.63 17.32 2.25 0.04 -1.59 16 23 F -0.19 -1.63 17.32 2.25 0.04 -1.59 16 24 S 0.16 1.58 23.31 -107.50 -2.51 -0.92 16 25 C 0.12 2.74 5.23 -3.06 -0.02 2.73 16 26 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 27 H 0.38 9.36 7.45 45.56 0.34 9.70 16 28 H 0.08 1.38 8.05 -51.92 -0.42 0.96 16 29 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 0.64 7.29 -51.93 -0.38 0.26 16 32 H 0.42 4.20 7.29 -40.82 -0.30 3.90 16 33 H 0.15 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 1.79 7.82 -51.93 -0.41 1.38 16 35 H 0.07 1.75 7.92 -51.93 -0.41 1.34 16 LS Contribution 326.60 15.07 4.92 4.92 Total: -1.00 -31.34 326.60 -6.64 -37.98 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -2.38 Total: 9.96 kcal Atomic # 6 Polarization: 15.27 SS G_CDS: -1.96 Total: 13.30 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: 0.61 Total: -50.41 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.38 Total: -26.58 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.08 Total: -3.18 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -2.51 Total: -0.92 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.34 -6.64 -37.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365126970.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.181 kcal (2) G-P(sol) polarization free energy of solvation -31.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds