Wall clock time and date at job start Tue Mar 31 2020 18:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99763 * 2 1 4 4 H 1.48501 * 109.47187 * 239.99696 * 3 2 1 5 5 H 1.48505 * 109.47279 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47246 * 119.99955 * 3 2 1 7 7 C 1.37872 * 120.00366 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00563 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00075 * 0.02562 * 7 2 1 10 10 O 1.42899 * 110.63924 * 298.31173 * 9 7 2 11 11 C 1.55148 * 110.87775 * 175.06011 * 9 7 2 12 12 C 1.55123 * 101.48856 * 205.89889 * 11 9 7 13 13 N 1.47424 * 104.72626 * 37.29417 * 12 11 9 14 14 C 1.34771 * 125.64868 * 155.81825 * 13 12 11 15 15 O 1.21586 * 119.99753 * 179.69466 * 14 13 12 16 16 N 1.34774 * 120.00194 * 359.69083 * 14 13 12 17 17 C 1.39084 * 120.00073 * 180.02562 * 16 14 13 18 18 N 1.29896 * 125.65369 * 0.02703 * 17 16 14 19 19 N 1.26248 * 117.65706 * 179.97438 * 18 17 16 20 20 C 1.29495 * 116.58555 * 0.02562 * 19 18 17 21 21 C 1.50703 * 126.14339 * 179.97438 * 20 19 18 22 22 F 1.39904 * 109.46969 * 240.02447 * 21 20 19 23 23 F 1.39901 * 109.47086 * 120.02850 * 21 20 19 24 24 S 1.71306 * 125.65576 * 180.29871 * 17 16 14 25 25 C 1.47024 * 108.69745 * 335.55360 * 13 12 11 26 26 H 0.97003 * 120.00473 * 0.02562 * 1 2 3 27 27 H 0.96702 * 114.00579 * 61.68322 * 10 9 7 28 28 H 1.09008 * 111.00392 * 324.13767 * 11 9 7 29 29 H 1.09005 * 111.00600 * 87.98465 * 11 9 7 30 30 H 1.09003 * 110.50037 * 278.45084 * 12 11 9 31 31 H 1.09001 * 110.34344 * 156.06184 * 12 11 9 32 32 H 0.96994 * 120.00333 * 0.02562 * 16 14 13 33 33 H 1.09002 * 109.47152 * 0.02562 * 21 20 19 34 34 H 1.09002 * 109.87640 * 120.70473 * 25 13 12 35 35 H 1.08993 * 109.88158 * 241.70828 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 0.4496 -2.6180 1.1776 11 6 2.2256 -3.7000 -0.1236 12 6 1.3111 -4.7746 -0.7682 13 7 0.4619 -4.0263 -1.7128 14 6 -0.1445 -4.5406 -2.8009 15 8 -0.8291 -3.8279 -3.5092 16 7 0.0079 -5.8450 -3.1040 17 6 -0.6175 -6.3757 -4.2273 18 7 -1.3694 -5.7174 -5.0571 19 7 -1.8628 -6.3519 -6.0307 20 6 -1.5699 -7.6108 -6.1101 21 6 -2.0388 -8.5669 -7.1765 22 9 -2.7678 -9.6042 -6.5849 23 9 -0.9313 -9.0983 -7.8461 24 16 -0.5292 -8.0071 -4.7421 25 6 0.3811 -2.6274 -1.2676 26 1 -0.4851 0.8400 -0.0004 27 1 -0.2286 -1.9339 1.2625 28 1 3.0656 -3.4560 -0.7741 29 1 2.5742 -4.0234 0.8572 30 1 0.6976 -5.2592 -0.0086 31 1 1.9109 -5.5130 -1.3002 32 1 0.5538 -6.4137 -2.5388 33 1 -2.6729 -8.0364 -7.8868 34 1 0.7625 -1.9678 -2.0471 35 1 -0.6530 -2.3706 -1.0382 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365126970.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:58 Heat of formation + Delta-G solvation = -111.346436 kcal Electronic energy + Delta-G solvation = -25955.786663 eV Core-core repulsion = 21559.080400 eV Total energy + Delta-G solvation = -4396.706264 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.070 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.20178 -48.21063 -42.71231 -41.48363 -39.36678 -36.60523 -36.18734 -34.24256 -32.97920 -31.72848 -29.73519 -28.88533 -27.18079 -26.00909 -24.60827 -22.92986 -21.63001 -21.35888 -20.49031 -19.42661 -19.06738 -18.90394 -18.54560 -18.11080 -17.57884 -17.26850 -16.91371 -16.55441 -16.34730 -16.15505 -15.16021 -15.02181 -14.88592 -14.81407 -14.76723 -14.56096 -14.12660 -14.03330 -13.54154 -13.42348 -12.95238 -12.90147 -12.84195 -12.59077 -12.36379 -12.33887 -12.12572 -11.87998 -11.75518 -11.19992 -11.16876 -10.97165 -10.66744 -10.33451 -10.29033 -9.63336 -8.28021 -6.43534 -0.98222 -0.84523 -0.20239 1.08393 1.15085 1.42478 1.43489 1.50835 1.91613 1.99864 2.36220 2.52410 2.96709 2.99239 3.32837 3.66150 3.73498 3.75336 3.94150 4.00564 4.11516 4.31842 4.52437 4.64868 4.66178 4.99673 5.04783 5.10164 5.30099 5.42070 5.59700 5.72806 6.04459 6.55459 6.65694 7.08430 7.25646 7.33554 7.34471 8.77653 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.029639 B = 0.002487 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.473650 B =11253.715677 C =11658.659606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.026 3.974 3 Si 0.961 3.039 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.557 4.557 8 H 0.070 0.930 9 C 0.234 3.766 10 O -0.585 6.585 11 C -0.109 4.109 12 C 0.096 3.904 13 N -0.620 5.620 14 C 0.706 3.294 15 O -0.581 6.581 16 N -0.614 5.614 17 C 0.245 3.755 18 N -0.323 5.323 19 N -0.206 5.206 20 C -0.114 4.114 21 C 0.373 3.627 22 F -0.187 7.187 23 F -0.186 7.186 24 S 0.260 5.740 25 C 0.139 3.861 26 H 0.270 0.730 27 H 0.376 0.624 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.111 0.889 32 H 0.442 0.558 33 H 0.184 0.816 34 H 0.034 0.966 35 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.260 -21.552 -8.669 23.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.175 4.175 3 Si 0.786 3.214 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.595 4.595 8 H 0.088 0.912 9 C 0.194 3.806 10 O -0.393 6.393 11 C -0.147 4.147 12 C -0.025 4.025 13 N -0.357 5.357 14 C 0.406 3.594 15 O -0.455 6.455 16 N -0.270 5.270 17 C -0.124 4.124 18 N -0.170 5.170 19 N -0.045 5.045 20 C -0.397 4.397 21 C 0.315 3.685 22 F -0.168 7.168 23 F -0.168 7.168 24 S 0.500 5.500 25 C 0.016 3.984 26 H 0.079 0.921 27 H 0.225 0.775 28 H 0.105 0.895 29 H 0.114 0.886 30 H 0.101 0.899 31 H 0.129 0.871 32 H 0.285 0.715 33 H 0.200 0.800 34 H 0.053 0.947 35 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 0.908 -21.141 -9.067 23.021 hybrid contribution -0.034 1.792 0.297 1.817 sum 0.874 -19.349 -8.769 21.261 Atomic orbital electron populations 1.69785 1.07080 1.28545 1.50004 1.25800 0.95765 1.02804 0.93160 0.85561 0.78362 0.78565 0.78890 1.19877 1.21247 1.19154 1.21802 0.94015 0.91234 1.52416 0.91233 1.19714 0.87014 0.93693 0.80221 1.86095 1.51688 1.56273 1.45255 1.22766 0.96799 0.93307 1.01831 1.22708 0.92628 0.95110 0.92014 1.47950 1.50674 1.12520 1.24539 1.15648 0.80857 0.81479 0.81437 1.91047 1.43510 1.58994 1.51985 1.41895 1.50880 1.09757 1.24494 1.26073 0.96828 0.95835 0.93712 1.71694 1.13750 1.29472 1.02053 1.71378 1.16334 1.03743 1.13052 1.31003 1.06964 0.97452 1.04277 1.19651 0.81558 0.80654 0.86671 1.93075 1.77180 1.60834 1.85684 1.93074 1.55758 1.87562 1.80359 1.84422 1.45359 1.00985 1.19217 1.22547 0.99723 0.78085 0.98077 0.92114 0.77532 0.89493 0.88620 0.89881 0.87085 0.71516 0.79988 0.94708 0.94889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.19 10.96 21.44 0.24 -48.96 16 2 C 0.03 1.33 5.28 84.65 0.45 1.78 16 3 Si 0.96 41.47 29.54 68.60 2.03 43.50 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 5 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 7 C -0.56 -28.07 8.13 25.60 0.21 -27.86 16 8 H 0.07 3.39 7.78 -2.91 -0.02 3.36 16 9 C 0.23 10.67 0.85 -10.35 -0.01 10.66 16 10 O -0.59 -27.96 13.07 -148.98 -1.95 -29.91 16 11 C -0.11 -3.68 6.24 32.06 0.20 -3.48 16 12 C 0.10 2.64 6.58 86.93 0.57 3.21 16 13 N -0.62 -23.38 3.32 -829.34 -2.76 -26.14 16 14 C 0.71 27.20 8.45 179.06 1.51 28.71 16 15 O -0.58 -28.77 15.35 -3.99 -0.06 -28.84 16 16 N -0.61 -16.43 5.37 -326.97 -1.75 -18.18 16 17 C 0.25 6.78 8.14 179.10 1.46 8.24 16 18 N -0.32 -11.48 9.73 -59.09 -0.58 -12.05 16 19 N -0.21 -6.07 11.65 -47.68 -0.56 -6.62 16 20 C -0.11 -2.33 7.23 88.45 0.64 -1.69 16 21 C 0.37 4.97 5.86 71.24 0.42 5.38 16 22 F -0.19 -2.70 17.32 44.97 0.78 -1.92 16 23 F -0.19 -2.69 17.32 44.97 0.78 -1.91 16 24 S 0.26 4.43 23.31 -56.49 -1.32 3.11 16 25 C 0.14 6.63 5.23 86.73 0.45 7.09 16 26 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 27 H 0.38 19.04 7.45 -74.06 -0.55 18.49 16 28 H 0.09 2.80 8.05 -2.38 -0.02 2.78 16 29 H 0.10 2.93 8.14 -2.38 -0.02 2.91 16 30 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.11 1.90 7.29 -2.39 -0.02 1.88 16 32 H 0.44 7.34 7.29 -92.71 -0.68 6.66 16 33 H 0.18 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.03 1.86 7.82 -2.39 -0.02 1.84 16 35 H 0.03 1.77 7.92 -2.39 -0.02 1.75 16 Total: -1.00 -73.29 326.60 0.72 -72.57 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: -0.03 Total: 23.32 kcal Atomic # 6 Polarization: 26.14 SS G_CDS: 5.90 Total: 32.04 kcal Atomic # 7 Polarization: -106.55 SS G_CDS: -5.41 Total: -111.95 kcal Atomic # 8 Polarization: -56.74 SS G_CDS: -2.01 Total: -58.75 kcal Atomic # 9 Polarization: -5.39 SS G_CDS: 1.56 Total: -3.83 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Atomic # 16 Polarization: 4.43 SS G_CDS: -1.32 Total: 3.11 kcal Total: -73.29 0.72 -72.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365126970.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.780 kcal (2) G-P(sol) polarization free energy of solvation -73.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds