Wall clock time and date at job start Tue Mar 31 2020 17:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35956 * 116.99599 * 2 1 4 4 N 1.30341 * 121.63906 * 0.02562 * 3 2 1 5 5 S 1.69586 * 107.16822 * 179.97438 * 4 3 2 6 6 C 1.72024 * 95.78554 * 359.82031 * 5 4 3 7 7 C 1.35056 * 105.59946 * 0.30068 * 6 5 4 8 8 S 1.76197 * 122.64311 * 179.97438 * 7 6 5 9 9 O 1.42108 * 106.39680 * 1.17206 * 8 7 6 10 10 O 1.42097 * 106.40597 * 228.25254 * 8 7 6 11 11 N 1.65599 * 107.22190 * 114.70755 * 8 7 6 12 12 C 1.47421 * 125.64600 * 89.97315 * 11 8 7 13 13 C 1.54917 * 104.83002 * 155.91319 * 12 11 8 14 14 C 1.55151 * 101.58025 * 37.01304 * 13 12 11 15 15 O 1.42892 * 110.72056 * 82.86198 * 14 13 12 16 16 C 1.50703 * 110.71812 * 206.13470 * 14 13 12 17 17 H 1.08009 * 119.99657 * 118.54612 * 16 14 13 18 18 C 1.37871 * 120.00432 * 298.54747 * 16 14 13 19 19 N 1.31522 * 119.99505 * 359.97438 * 18 16 14 20 20 Si 1.86795 * 120.00554 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47375 * 89.99722 * 20 18 16 22 22 H 1.48504 * 109.47283 * 210.00156 * 20 18 16 23 23 H 1.48504 * 109.46820 * 329.99893 * 20 18 16 24 24 C 1.47021 * 125.64948 * 270.02546 * 11 8 7 25 25 H 1.08994 * 109.47730 * 300.00008 * 1 2 3 26 26 H 1.09007 * 109.47295 * 60.00129 * 1 2 3 27 27 H 1.09006 * 109.47319 * 180.02562 * 1 2 3 28 28 H 1.08003 * 127.20450 * 180.22487 * 6 5 4 29 29 H 1.09002 * 110.36865 * 37.07812 * 12 11 8 30 30 H 1.08994 * 110.46657 * 274.79961 * 12 11 8 31 31 H 1.08998 * 111.00193 * 155.08783 * 13 12 11 32 32 H 1.09004 * 111.00194 * 278.93638 * 13 12 11 33 33 H 0.96702 * 114.00013 * 61.45358 * 15 14 13 34 34 H 0.97003 * 119.99636 * 179.97438 * 19 18 16 35 35 H 1.08996 * 109.88310 * 300.43588 * 24 11 8 36 36 H 1.09002 * 109.88672 * 61.44628 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 7 1.3677 2.3244 0.0005 5 16 2.4907 3.5951 0.0010 6 6 3.8880 2.5918 0.0059 7 6 3.4243 1.3233 0.0001 8 16 4.4914 -0.0787 0.0015 9 8 5.8188 0.4275 0.0374 10 8 4.0173 -0.9450 -1.0202 11 7 4.2551 -0.8733 1.4351 12 6 3.2686 -1.9429 1.6721 13 6 3.8337 -2.7448 2.8711 14 6 4.4519 -1.6159 3.7373 15 8 3.4515 -0.9937 4.5459 16 6 5.5723 -2.1517 4.5910 17 1 6.5750 -1.7695 4.4682 18 6 5.3175 -3.1298 5.5286 19 7 4.0964 -3.5949 5.6784 20 14 6.7060 -3.7935 6.5872 21 1 6.8147 -2.9827 7.8265 22 1 6.4244 -5.2073 6.9438 23 1 7.9830 -3.7182 5.8329 24 6 4.9936 -0.6281 2.6825 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 4.9202 2.9096 0.0112 29 1 3.1844 -2.5827 0.7937 30 1 2.2977 -1.5167 1.9246 31 1 3.0361 -3.2576 3.4087 32 1 4.5982 -3.4497 2.5441 33 1 3.0244 -1.5927 5.1735 34 1 3.9171 -4.2833 6.3379 35 1 6.0578 -0.8022 2.5236 36 1 4.8314 0.3975 3.0140 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365424814.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:23 Heat of formation + Delta-G solvation = -102.798972 kcal Electronic energy + Delta-G solvation = -25726.770194 eV Core-core repulsion = 21851.982211 eV Total energy + Delta-G solvation = -3874.787982 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 334.054 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.30279 -38.05731 -37.10391 -36.73058 -35.60693 -34.29206 -32.20135 -31.61840 -29.14843 -28.28436 -28.10868 -24.87806 -24.49320 -21.63412 -21.24958 -19.79142 -19.49140 -18.29514 -17.88624 -17.27027 -16.93771 -16.27357 -15.99199 -15.45225 -15.16178 -14.93009 -14.46146 -14.14850 -13.82872 -13.78009 -13.25257 -12.99670 -12.35637 -12.14462 -12.04892 -11.96918 -11.88142 -11.81898 -11.60394 -11.50725 -11.35141 -11.30548 -11.06043 -10.83493 -10.66480 -10.47058 -10.40303 -10.22524 -10.08654 -9.33986 -8.78591 -8.65594 -8.41182 -8.18442 -6.26933 -4.34414 0.17039 0.51149 1.20827 1.45066 1.92015 2.94614 3.21448 3.26645 3.29048 3.33431 3.94550 4.25132 4.28267 4.68289 4.97473 5.04862 5.05564 5.15335 5.16350 5.45049 5.47759 5.83452 5.89438 6.02082 6.09114 6.28281 6.36127 6.67145 6.80336 6.81263 6.97472 7.04460 7.38045 7.41179 7.75256 8.04549 8.67894 9.31721 9.40345 10.80541 Molecular weight = 334.05amu Principal moments of inertia in cm(-1) A = 0.018753 B = 0.004081 C = 0.003943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.721347 B = 6859.279688 C = 7098.722960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.284 6.284 3 C 0.383 3.617 4 N -0.536 5.536 5 S 0.331 5.669 6 C -0.074 4.074 7 C -0.756 4.756 8 S 2.731 3.269 9 O -0.956 6.956 10 O -0.945 6.945 11 N -0.996 5.996 12 C 0.119 3.881 13 C -0.130 4.130 14 C 0.251 3.749 15 O -0.586 6.586 16 C -0.535 4.535 17 H 0.065 0.935 18 C 0.073 3.927 19 N -0.896 5.896 20 Si 0.902 3.098 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.272 1.272 24 C 0.135 3.865 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.108 0.892 28 H 0.209 0.791 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.382 0.618 34 H 0.267 0.733 35 H 0.078 0.922 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.353 9.677 -10.060 14.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.188 6.188 3 C 0.169 3.831 4 N -0.377 5.377 5 S 0.480 5.520 6 C -0.224 4.224 7 C -0.857 4.857 8 S 2.815 3.185 9 O -0.947 6.947 10 O -0.935 6.935 11 N -0.837 5.837 12 C -0.005 4.005 13 C -0.170 4.170 14 C 0.210 3.790 15 O -0.395 6.395 16 C -0.574 4.574 17 H 0.083 0.917 18 C -0.130 4.130 19 N -0.535 5.535 20 Si 0.729 3.271 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.197 1.197 24 C 0.011 3.989 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.126 0.874 28 H 0.226 0.774 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.086 0.914 33 H 0.232 0.768 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.106 11.262 -11.072 16.933 hybrid contribution 0.753 -1.747 1.262 2.283 sum -5.353 9.515 -9.810 14.677 Atomic orbital electron populations 1.23067 0.75944 1.04283 1.02533 1.86384 1.23713 1.21586 1.87134 1.19242 0.87816 0.85681 0.90324 1.76502 1.25821 1.00953 1.34445 1.83804 0.89866 1.13371 1.65006 1.26692 1.07859 0.95593 0.92248 1.30534 1.07580 1.20038 1.27552 1.01037 0.72851 0.72313 0.72294 1.93551 1.33229 1.81199 1.86705 1.93562 1.82081 1.63280 1.54624 1.58380 1.49590 1.48541 1.27189 1.22194 0.90859 0.87769 0.99709 1.23286 1.00977 0.98478 0.94219 1.19451 0.86507 0.86368 0.86704 1.86111 1.56203 1.42299 1.54907 1.21548 0.94982 1.21091 1.19766 0.91670 1.24980 0.96036 0.95435 0.96538 1.69708 1.19383 1.29376 1.35015 0.86433 0.82148 0.77993 0.80491 1.20497 1.21114 1.19676 1.21906 0.95204 0.99778 0.82056 0.91767 0.92044 0.87365 0.77370 0.91374 0.92237 0.89531 0.91379 0.76836 0.92273 0.90364 0.92597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.47 101.05 1.06 1.47 16 2 O -0.28 -4.38 9.08 -19.73 -0.18 -4.56 16 3 C 0.38 5.99 7.39 -18.17 -0.13 5.86 16 4 N -0.54 -7.72 11.14 28.91 0.32 -7.40 16 5 S 0.33 3.64 23.71 -107.50 -2.55 1.09 16 6 C -0.07 -0.89 10.81 29.60 0.32 -0.57 16 7 C -0.76 -11.60 5.87 -40.70 -0.24 -11.84 16 8 S 2.73 48.17 5.70 -107.50 -0.61 47.56 16 9 O -0.96 -17.70 17.05 -57.17 -0.97 -18.68 16 10 O -0.95 -18.28 16.97 -58.83 -1.00 -19.28 16 11 N -1.00 -19.06 3.70 -111.42 -0.41 -19.47 16 12 C 0.12 2.27 6.82 -2.53 -0.02 2.25 16 13 C -0.13 -2.81 5.47 -24.58 -0.13 -2.95 16 14 C 0.25 5.89 0.84 -89.94 -0.08 5.81 16 15 O -0.59 -14.22 13.08 -35.23 -0.46 -14.68 16 16 C -0.54 -13.66 8.21 -34.44 -0.28 -13.95 16 17 H 0.07 1.65 7.57 -52.48 -0.40 1.26 16 18 C 0.07 1.84 5.28 -17.82 -0.09 1.74 16 19 N -0.90 -22.65 10.69 55.43 0.59 -22.06 16 20 Si 0.90 19.96 29.54 -169.99 -5.02 14.94 16 21 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 24 C 0.13 2.83 6.34 -3.06 -0.02 2.81 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.21 1.85 7.94 -52.48 -0.42 1.44 16 29 H 0.07 1.21 7.78 -51.93 -0.40 0.80 16 30 H 0.06 1.09 7.67 -51.93 -0.40 0.69 16 31 H 0.09 1.94 7.54 -51.93 -0.39 1.55 16 32 H 0.07 1.52 8.04 -51.93 -0.42 1.10 16 33 H 0.38 9.32 7.49 45.56 0.34 9.66 16 34 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 35 H 0.08 1.62 7.66 -51.93 -0.40 1.23 16 36 H 0.06 1.13 8.07 -51.93 -0.42 0.71 16 LS Contribution 331.95 15.07 5.00 5.00 Total: -1.00 -30.33 331.95 -8.21 -38.54 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -3.30 Total: 8.34 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: 0.38 Total: -9.36 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: 0.50 Total: -48.92 kcal Atomic # 8 Polarization: -54.58 SS G_CDS: -2.61 Total: -57.20 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Atomic # 16 Polarization: 51.81 SS G_CDS: -3.16 Total: 48.65 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.33 -8.21 -38.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365424814.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.257 kcal (2) G-P(sol) polarization free energy of solvation -30.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds