Wall clock time and date at job start Tue Mar 31 2020 17:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35956 * 116.99599 * 2 1 4 4 N 1.30341 * 121.63906 * 0.02562 * 3 2 1 5 5 S 1.69586 * 107.16822 * 179.97438 * 4 3 2 6 6 C 1.72024 * 95.78554 * 359.82031 * 5 4 3 7 7 C 1.35056 * 105.59946 * 0.30068 * 6 5 4 8 8 S 1.76197 * 122.64311 * 179.97438 * 7 6 5 9 9 O 1.42108 * 106.39680 * 1.17206 * 8 7 6 10 10 O 1.42097 * 106.40597 * 228.25254 * 8 7 6 11 11 N 1.65599 * 107.22190 * 114.70755 * 8 7 6 12 12 C 1.47421 * 125.64600 * 89.97315 * 11 8 7 13 13 C 1.54917 * 104.83002 * 155.91319 * 12 11 8 14 14 C 1.55151 * 101.58025 * 37.01304 * 13 12 11 15 15 O 1.42892 * 110.72056 * 82.86198 * 14 13 12 16 16 C 1.50703 * 110.71812 * 206.13470 * 14 13 12 17 17 H 1.08009 * 119.99657 * 118.54612 * 16 14 13 18 18 C 1.37871 * 120.00432 * 298.54747 * 16 14 13 19 19 N 1.31522 * 119.99505 * 359.97438 * 18 16 14 20 20 Si 1.86795 * 120.00554 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47375 * 89.99722 * 20 18 16 22 22 H 1.48504 * 109.47283 * 210.00156 * 20 18 16 23 23 H 1.48504 * 109.46820 * 329.99893 * 20 18 16 24 24 C 1.47021 * 125.64948 * 270.02546 * 11 8 7 25 25 H 1.08994 * 109.47730 * 300.00008 * 1 2 3 26 26 H 1.09007 * 109.47295 * 60.00129 * 1 2 3 27 27 H 1.09006 * 109.47319 * 180.02562 * 1 2 3 28 28 H 1.08003 * 127.20450 * 180.22487 * 6 5 4 29 29 H 1.09002 * 110.36865 * 37.07812 * 12 11 8 30 30 H 1.08994 * 110.46657 * 274.79961 * 12 11 8 31 31 H 1.08998 * 111.00193 * 155.08783 * 13 12 11 32 32 H 1.09004 * 111.00194 * 278.93638 * 13 12 11 33 33 H 0.96702 * 114.00013 * 61.45358 * 15 14 13 34 34 H 0.97003 * 119.99636 * 179.97438 * 19 18 16 35 35 H 1.08996 * 109.88310 * 300.43588 * 24 11 8 36 36 H 1.09002 * 109.88672 * 61.44628 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 7 1.3677 2.3244 0.0005 5 16 2.4907 3.5951 0.0010 6 6 3.8880 2.5918 0.0059 7 6 3.4243 1.3233 0.0001 8 16 4.4914 -0.0787 0.0015 9 8 5.8188 0.4275 0.0374 10 8 4.0173 -0.9450 -1.0202 11 7 4.2551 -0.8733 1.4351 12 6 3.2686 -1.9429 1.6721 13 6 3.8337 -2.7448 2.8711 14 6 4.4519 -1.6159 3.7373 15 8 3.4515 -0.9937 4.5459 16 6 5.5723 -2.1517 4.5910 17 1 6.5750 -1.7695 4.4682 18 6 5.3175 -3.1298 5.5286 19 7 4.0964 -3.5949 5.6784 20 14 6.7060 -3.7935 6.5872 21 1 6.8147 -2.9827 7.8265 22 1 6.4244 -5.2073 6.9438 23 1 7.9830 -3.7182 5.8329 24 6 4.9936 -0.6281 2.6825 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 4.9202 2.9096 0.0112 29 1 3.1844 -2.5827 0.7937 30 1 2.2977 -1.5167 1.9246 31 1 3.0361 -3.2576 3.4087 32 1 4.5982 -3.4497 2.5441 33 1 3.0244 -1.5927 5.1735 34 1 3.9171 -4.2833 6.3379 35 1 6.0578 -0.8022 2.5236 36 1 4.8314 0.3975 3.0140 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365424814.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:22 Heat of formation + Delta-G solvation = -128.851423 kcal Electronic energy + Delta-G solvation = -25727.899913 eV Core-core repulsion = 21851.982211 eV Total energy + Delta-G solvation = -3875.917701 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 334.054 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.33643 -39.75923 -38.43780 -37.85924 -37.04029 -36.05234 -34.13819 -32.65989 -30.84293 -29.98587 -29.03772 -26.68666 -25.55194 -23.19654 -22.40563 -21.57580 -20.59018 -19.71044 -19.05942 -18.86555 -18.48702 -17.36494 -17.17387 -16.86089 -16.84620 -16.21816 -16.06344 -15.82008 -15.03658 -14.83622 -14.74996 -14.53321 -13.92502 -13.68035 -13.42202 -13.37472 -13.31431 -13.24213 -13.09484 -12.91916 -12.78300 -12.60776 -12.51742 -12.27988 -12.23479 -12.13806 -11.93052 -11.74408 -11.29586 -11.14182 -10.57414 -10.07224 -9.97110 -9.69937 -8.18456 -6.32255 -0.91590 -0.71131 0.23408 0.45053 0.79545 1.45300 1.48545 1.56922 1.88901 1.99194 2.43503 2.61744 3.02626 3.09577 3.60472 3.79849 3.90356 4.12626 4.18094 4.25384 4.31115 4.33688 4.49988 4.64105 4.65696 4.73605 4.87445 5.00818 5.22296 5.27263 5.37561 5.58559 5.60147 5.80869 5.83658 6.15574 6.72078 7.37655 7.46093 8.87374 Molecular weight = 334.05amu Principal moments of inertia in cm(-1) A = 0.018753 B = 0.004081 C = 0.003943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.721347 B = 6859.279688 C = 7098.722960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.306 6.306 3 C 0.369 3.631 4 N -0.563 5.563 5 S 0.411 5.589 6 C -0.069 4.069 7 C -0.784 4.784 8 S 2.747 3.253 9 O -0.969 6.969 10 O -0.967 6.967 11 N -1.002 6.002 12 C 0.127 3.873 13 C -0.123 4.123 14 C 0.237 3.763 15 O -0.590 6.590 16 C -0.560 4.560 17 H 0.059 0.941 18 C 0.036 3.964 19 N -0.908 5.908 20 Si 0.957 3.043 21 H -0.278 1.278 22 H -0.282 1.282 23 H -0.272 1.272 24 C 0.140 3.860 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.129 0.871 28 H 0.239 0.761 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.377 0.623 34 H 0.269 0.731 35 H 0.075 0.925 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.386 11.115 -10.477 16.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.211 6.211 3 C 0.157 3.843 4 N -0.404 5.404 5 S 0.560 5.440 6 C -0.219 4.219 7 C -0.889 4.889 8 S 2.836 3.164 9 O -0.960 6.960 10 O -0.957 6.957 11 N -0.842 5.842 12 C 0.003 3.997 13 C -0.163 4.163 14 C 0.196 3.804 15 O -0.399 6.399 16 C -0.598 4.598 17 H 0.077 0.923 18 C -0.165 4.165 19 N -0.547 5.547 20 Si 0.783 3.217 21 H -0.204 1.204 22 H -0.208 1.208 23 H -0.197 1.197 24 C 0.015 3.985 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.147 0.853 28 H 0.256 0.744 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.227 0.773 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.126 12.663 -11.492 18.164 hybrid contribution 0.701 -2.014 1.362 2.531 sum -5.424 10.649 -10.130 15.666 Atomic orbital electron populations 1.23309 0.74368 1.05848 1.02846 1.86344 1.25460 1.22095 1.87180 1.19359 0.88001 0.86053 0.90926 1.76338 1.27732 1.01641 1.34738 1.83561 0.87689 1.10624 1.62173 1.27204 1.09985 0.94823 0.89891 1.30132 1.07234 1.19982 1.31519 1.00228 0.72584 0.72357 0.71273 1.93526 1.34407 1.81401 1.86660 1.93530 1.82440 1.64743 1.55028 1.58351 1.49522 1.49439 1.26853 1.22082 0.90939 0.87712 0.98972 1.23103 1.00192 0.98031 0.95017 1.19614 0.86080 0.87634 0.87079 1.86098 1.56358 1.42413 1.55012 1.21819 0.95392 1.21793 1.20830 0.92308 1.25589 0.97940 0.95594 0.97418 1.69779 1.20347 1.29392 1.35184 0.85581 0.79799 0.77418 0.78934 1.20363 1.20754 1.19683 1.21711 0.95110 0.99453 0.82243 0.91853 0.91292 0.85251 0.74446 0.90142 0.91515 0.90676 0.92604 0.77319 0.92136 0.90656 0.91949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 10.47 113.37 1.19 1.85 16 2 O -0.31 -9.20 9.08 -92.94 -0.84 -10.04 16 3 C 0.37 11.08 7.39 84.92 0.63 11.71 16 4 N -0.56 -15.09 11.14 -176.09 -1.96 -17.05 16 5 S 0.41 7.75 23.71 -56.49 -1.34 6.41 16 6 C -0.07 -1.48 10.81 67.09 0.73 -0.75 16 7 C -0.78 -22.83 5.87 21.54 0.13 -22.70 16 8 S 2.75 94.85 5.70 -56.49 -0.32 94.53 16 9 O -0.97 -34.90 17.05 -128.00 -2.18 -37.08 16 10 O -0.97 -37.02 16.97 -126.42 -2.14 -39.16 16 11 N -1.00 -38.00 3.70 -506.43 -1.87 -39.87 16 12 C 0.13 4.83 6.82 86.86 0.59 5.42 16 13 C -0.12 -5.43 5.47 31.99 0.17 -5.25 16 14 C 0.24 11.20 0.84 -10.35 -0.01 11.19 16 15 O -0.59 -28.83 13.08 -148.98 -1.95 -30.78 16 16 C -0.56 -28.82 8.21 25.60 0.21 -28.61 16 17 H 0.06 3.02 7.57 -2.91 -0.02 2.99 16 18 C 0.04 1.81 5.28 84.65 0.45 2.25 16 19 N -0.91 -46.09 10.69 21.45 0.23 -45.87 16 20 Si 0.96 40.83 29.54 68.60 2.03 42.86 16 21 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 22 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 24 C 0.14 5.86 6.34 86.73 0.55 6.40 16 25 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 27 H 0.13 2.14 8.14 -2.38 -0.02 2.13 16 28 H 0.24 3.40 7.94 -2.91 -0.02 3.37 16 29 H 0.08 2.83 7.78 -2.39 -0.02 2.81 16 30 H 0.07 2.43 7.67 -2.39 -0.02 2.41 16 31 H 0.07 3.43 7.54 -2.39 -0.02 3.41 16 32 H 0.06 2.54 8.04 -2.38 -0.02 2.52 16 33 H 0.38 18.72 7.49 -74.06 -0.55 18.16 16 34 H 0.27 13.08 8.31 -92.71 -0.77 12.31 16 35 H 0.08 3.15 7.66 -2.39 -0.02 3.13 16 36 H 0.06 2.48 8.07 -2.39 -0.02 2.47 16 Total: -1.00 -63.97 331.95 -5.15 -69.11 By element: Atomic # 1 Polarization: 24.84 SS G_CDS: 0.58 Total: 25.43 kcal Atomic # 6 Polarization: -23.12 SS G_CDS: 4.63 Total: -18.49 kcal Atomic # 7 Polarization: -99.18 SS G_CDS: -3.60 Total: -102.79 kcal Atomic # 8 Polarization: -109.95 SS G_CDS: -7.12 Total: -117.06 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Atomic # 16 Polarization: 102.61 SS G_CDS: -1.66 Total: 100.95 kcal Total: -63.97 -5.15 -69.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365424814.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.738 kcal (2) G-P(sol) polarization free energy of solvation -63.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds