Wall clock time and date at job start Tue Mar 31 2020 19:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86797 * 120.00375 * 2 1 4 4 H 1.48506 * 109.46953 * 269.99701 * 3 2 1 5 5 H 1.48494 * 109.47187 * 29.99435 * 3 2 1 6 6 H 1.48495 * 109.47353 * 150.00076 * 3 2 1 7 7 C 1.38658 * 119.99612 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00271 * 359.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 180.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38898 * 120.06778 * 354.17533 * 10 9 7 12 12 C 1.38080 * 119.93224 * 179.67457 * 11 10 9 13 13 C 1.38324 * 120.06703 * 0.61662 * 12 11 10 14 14 C 1.38274 * 120.13763 * 359.68070 * 13 12 11 15 15 C 1.50705 * 119.96913 * 180.02562 * 14 13 12 16 16 N 1.46498 * 109.47170 * 269.97797 * 15 14 13 17 17 C 1.34777 * 119.99835 * 179.97438 * 16 15 14 18 18 O 1.21279 * 120.00106 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.99908 * 179.97438 * 17 16 15 20 20 O 1.42900 * 109.46991 * 179.97438 * 19 17 16 21 21 C 1.35957 * 116.99681 * 179.97438 * 20 19 17 22 22 C 1.38258 * 121.63462 * 179.74166 * 21 20 19 23 23 C 1.35066 * 114.71767 * 179.80836 * 22 21 20 24 24 S 1.72019 * 105.60435 * 0.41456 * 23 22 21 25 25 N 1.30335 * 121.63936 * 0.02872 * 21 20 19 26 26 C 1.38123 * 120.07175 * 359.97438 * 14 13 12 27 27 H 0.96999 * 119.99329 * 0.02562 * 1 2 3 28 28 H 1.08010 * 120.03286 * 359.97438 * 11 10 9 29 29 H 1.08001 * 119.96872 * 180.31612 * 12 11 10 30 30 H 1.08001 * 119.93406 * 179.69892 * 13 12 11 31 31 H 1.09006 * 109.46654 * 29.97662 * 15 14 13 32 32 H 1.08999 * 109.47320 * 149.97401 * 15 14 13 33 33 H 0.97004 * 120.00059 * 359.97438 * 16 15 14 34 34 H 1.09004 * 109.47112 * 300.00495 * 19 17 16 35 35 H 1.09005 * 109.46849 * 59.99788 * 19 17 16 36 36 H 1.08001 * 122.64211 * 0.02562 * 22 21 20 37 37 H 1.08005 * 127.19593 * 180.17331 * 23 22 21 38 38 H 1.07998 * 120.03894 * 180.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4471 2.6526 0.6999 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0014 9 8 3.3570 -1.2009 0.0011 10 6 3.9734 -2.4059 -0.1046 11 6 3.2238 -3.5750 -0.0851 12 6 3.8529 -4.7988 -0.1996 13 6 5.2294 -4.8618 -0.3206 14 6 5.9790 -3.6999 -0.3341 15 6 7.4784 -3.7729 -0.4667 16 7 8.0830 -3.8566 0.8651 17 6 9.4225 -3.9320 0.9936 18 8 10.1274 -3.9301 0.0066 19 6 10.0444 -4.0176 2.3636 20 8 11.4661 -4.0881 2.2377 21 6 12.1844 -4.1698 3.3892 22 6 13.5647 -4.2479 3.3789 23 6 14.1355 -4.3196 4.6009 24 16 12.8317 -4.2937 5.7228 25 7 11.6052 -4.1840 4.5567 26 6 5.3549 -2.4724 -0.2272 27 1 -0.4849 0.8401 -0.0004 28 1 2.1493 -3.5267 0.0145 29 1 3.2702 -5.7081 -0.1897 30 1 5.7197 -5.8204 -0.4050 31 1 7.7494 -4.6563 -1.0449 32 1 7.8421 -2.8801 -0.9753 33 1 7.5192 -3.8578 1.6545 34 1 9.7738 -3.1338 2.9413 35 1 9.6803 -4.9100 2.8728 36 1 14.1414 -4.2478 2.4657 37 1 15.1898 -4.3841 4.8264 38 1 5.9409 -1.5652 -0.2382 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411786628.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:06 Heat of formation + Delta-G solvation = -21.557911 kcal Electronic energy + Delta-G solvation = -24080.578529 eV Core-core repulsion = 20209.702567 eV Total energy + Delta-G solvation = -3870.875962 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.74385 -39.73434 -39.15465 -37.18805 -36.79037 -34.69143 -32.47962 -31.60596 -31.28335 -29.65343 -28.96991 -25.97357 -25.18016 -24.32737 -21.90604 -21.00395 -20.83088 -20.78008 -18.78166 -18.04544 -17.89496 -17.58081 -16.94580 -16.78006 -15.94035 -15.49526 -15.25851 -14.85410 -14.76496 -14.58944 -14.17847 -13.91192 -13.67400 -13.62744 -13.43859 -12.99920 -12.75215 -12.63968 -12.24401 -12.10818 -11.71353 -11.51648 -11.47713 -11.12703 -10.99875 -10.92634 -10.81021 -10.24800 -10.19926 -10.08916 -9.50552 -9.21097 -8.96273 -8.74020 -8.39687 -7.53345 -6.49603 -4.17096 0.26515 0.96621 1.28594 1.69853 2.05320 2.09207 2.38188 2.39294 3.16761 3.21077 3.34657 3.42354 4.16808 4.28299 4.31360 4.48591 4.60483 4.75977 4.77758 4.81606 4.98954 5.03768 5.06345 5.27558 5.35285 5.56759 5.69029 5.73175 5.76905 5.95907 6.09539 6.23677 6.36172 6.61875 6.64419 6.93843 7.05106 7.15419 7.30695 7.45519 7.69016 7.93704 7.98970 8.85093 9.45508 10.57682 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.016124 B = 0.001974 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.122536 B =14181.149187 C =15009.962884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.392 4.392 8 H 0.107 0.893 9 O -0.215 6.215 10 C 0.156 3.844 11 C -0.211 4.211 12 C -0.077 4.077 13 C -0.186 4.186 14 C -0.077 4.077 15 C 0.170 3.830 16 N -0.715 5.715 17 C 0.515 3.485 18 O -0.524 6.524 19 C 0.050 3.950 20 O -0.267 6.267 21 C 0.313 3.687 22 C -0.200 4.200 23 C -0.185 4.185 24 S 0.287 5.713 25 N -0.531 5.531 26 C -0.171 4.171 27 H 0.280 0.720 28 H 0.135 0.865 29 H 0.113 0.887 30 H 0.110 0.890 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.406 0.594 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.167 0.833 37 H 0.192 0.808 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.458 -9.882 9.405 28.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.184 1.184 7 C -0.467 4.467 8 H 0.124 0.876 9 O -0.120 6.120 10 C 0.104 3.896 11 C -0.230 4.230 12 C -0.096 4.096 13 C -0.205 4.205 14 C -0.078 4.078 15 C 0.048 3.952 16 N -0.369 5.369 17 C 0.299 3.701 18 O -0.399 6.399 19 C -0.029 4.029 20 O -0.171 6.171 21 C 0.098 3.902 22 C -0.235 4.235 23 C -0.333 4.333 24 S 0.436 5.564 25 N -0.372 5.372 26 C -0.191 4.191 27 H 0.091 0.909 28 H 0.152 0.848 29 H 0.131 0.869 30 H 0.128 0.872 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.241 0.759 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.185 0.815 37 H 0.209 0.791 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 23.648 -9.489 10.112 27.414 hybrid contribution 0.485 0.671 -1.144 1.413 sum 24.133 -8.817 8.968 27.214 Atomic orbital electron populations 1.69642 1.05578 1.28625 1.47520 1.24478 0.95044 0.98900 0.95537 0.86176 0.80297 0.81360 0.79046 1.19811 1.20712 1.18371 1.20759 0.76753 0.96669 1.52528 0.87574 1.83575 1.22719 1.25546 1.80127 1.19060 0.91556 0.85659 0.93369 1.21381 1.01360 0.91913 1.08343 1.20813 0.94149 0.96879 0.97712 1.20556 0.93890 0.96726 1.09348 1.19227 0.93166 0.93064 1.02313 1.20194 0.88974 1.02822 0.83214 1.45962 1.05731 1.74737 1.10428 1.19968 0.82732 0.77296 0.90118 1.90754 1.61282 1.48522 1.39356 1.22417 0.78967 1.05143 0.96382 1.86362 1.18877 1.87588 1.24304 1.20304 0.90145 0.94694 0.85025 1.20393 0.91465 1.10799 1.00890 1.26538 1.06594 1.03022 0.97127 1.84047 0.90322 1.68776 1.13299 1.76556 1.25526 1.32709 1.02396 1.20085 0.92017 0.97226 1.09759 0.90939 0.84785 0.86909 0.87227 0.90546 0.90549 0.75909 0.88207 0.88290 0.81542 0.79088 0.86334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.74 13.96 55.48 0.77 -23.96 16 2 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 3 Si 0.91 21.21 28.62 -169.99 -4.86 16.34 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.26 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.39 -10.68 9.95 30.89 0.31 -10.37 16 8 H 0.11 2.95 5.44 -52.49 -0.29 2.66 16 9 O -0.21 -5.44 8.59 0.05 0.00 -5.44 16 10 C 0.16 3.39 6.65 -39.11 -0.26 3.13 16 11 C -0.21 -4.24 9.17 -39.40 -0.36 -4.60 16 12 C -0.08 -1.28 10.04 -39.61 -0.40 -1.68 16 13 C -0.19 -2.80 9.70 -39.54 -0.38 -3.18 16 14 C -0.08 -1.18 5.25 -104.65 -0.55 -1.73 16 15 C 0.17 2.25 5.80 -5.19 -0.03 2.22 16 16 N -0.72 -8.33 5.55 -61.47 -0.34 -8.68 16 17 C 0.51 6.57 7.91 -10.98 -0.09 6.48 16 18 O -0.52 -8.75 16.50 -14.35 -0.24 -8.98 16 19 C 0.05 0.52 5.87 36.01 0.21 0.73 16 20 O -0.27 -3.23 9.71 -39.52 -0.38 -3.62 16 21 C 0.31 3.27 7.42 -18.18 -0.13 3.13 16 22 C -0.20 -1.55 10.20 -40.70 -0.42 -1.96 16 23 C -0.19 -1.00 11.41 29.60 0.34 -0.66 16 24 S 0.29 2.02 23.71 -107.50 -2.55 -0.53 16 25 N -0.53 -5.51 11.14 28.92 0.32 -5.19 16 26 C -0.17 -3.13 9.65 -39.39 -0.38 -3.51 16 27 H 0.28 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.13 2.86 5.64 -52.48 -0.30 2.57 16 29 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 30 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 31 H 0.08 0.98 8.09 -51.93 -0.42 0.56 16 32 H 0.08 1.05 8.08 -51.93 -0.42 0.63 16 33 H 0.41 4.02 8.46 -40.82 -0.35 3.67 16 34 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.19 0.35 8.06 -52.48 -0.42 -0.08 16 38 H 0.12 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 354.17 15.07 5.34 5.34 Total: -1.00 -32.24 354.17 -8.04 -40.28 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -3.86 Total: 4.79 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -2.24 Total: -10.35 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.76 Total: -37.83 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.62 Total: -18.04 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.86 Total: 16.34 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.55 Total: -0.53 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.24 -8.04 -40.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411786628.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.720 kcal (2) G-P(sol) polarization free energy of solvation -32.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds