Wall clock time and date at job start Tue Mar 31 2020 19:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86797 * 120.00375 * 2 1 4 4 H 1.48506 * 109.46953 * 269.99701 * 3 2 1 5 5 H 1.48494 * 109.47187 * 29.99435 * 3 2 1 6 6 H 1.48495 * 109.47353 * 150.00076 * 3 2 1 7 7 C 1.38658 * 119.99612 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00271 * 359.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 180.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38898 * 120.06778 * 354.17533 * 10 9 7 12 12 C 1.38080 * 119.93224 * 179.67457 * 11 10 9 13 13 C 1.38324 * 120.06703 * 0.61662 * 12 11 10 14 14 C 1.38274 * 120.13763 * 359.68070 * 13 12 11 15 15 C 1.50705 * 119.96913 * 180.02562 * 14 13 12 16 16 N 1.46498 * 109.47170 * 269.97797 * 15 14 13 17 17 C 1.34777 * 119.99835 * 179.97438 * 16 15 14 18 18 O 1.21279 * 120.00106 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.99908 * 179.97438 * 17 16 15 20 20 O 1.42900 * 109.46991 * 179.97438 * 19 17 16 21 21 C 1.35957 * 116.99681 * 179.97438 * 20 19 17 22 22 C 1.38258 * 121.63462 * 179.74166 * 21 20 19 23 23 C 1.35066 * 114.71767 * 179.80836 * 22 21 20 24 24 S 1.72019 * 105.60435 * 0.41456 * 23 22 21 25 25 N 1.30335 * 121.63936 * 0.02872 * 21 20 19 26 26 C 1.38123 * 120.07175 * 359.97438 * 14 13 12 27 27 H 0.96999 * 119.99329 * 0.02562 * 1 2 3 28 28 H 1.08010 * 120.03286 * 359.97438 * 11 10 9 29 29 H 1.08001 * 119.96872 * 180.31612 * 12 11 10 30 30 H 1.08001 * 119.93406 * 179.69892 * 13 12 11 31 31 H 1.09006 * 109.46654 * 29.97662 * 15 14 13 32 32 H 1.08999 * 109.47320 * 149.97401 * 15 14 13 33 33 H 0.97004 * 120.00059 * 359.97438 * 16 15 14 34 34 H 1.09004 * 109.47112 * 300.00495 * 19 17 16 35 35 H 1.09005 * 109.46849 * 59.99788 * 19 17 16 36 36 H 1.08001 * 122.64211 * 0.02562 * 22 21 20 37 37 H 1.08005 * 127.19593 * 180.17331 * 23 22 21 38 38 H 1.07998 * 120.03894 * 180.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4471 2.6526 0.6999 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0014 9 8 3.3570 -1.2009 0.0011 10 6 3.9734 -2.4059 -0.1046 11 6 3.2238 -3.5750 -0.0851 12 6 3.8529 -4.7988 -0.1996 13 6 5.2294 -4.8618 -0.3206 14 6 5.9790 -3.6999 -0.3341 15 6 7.4784 -3.7729 -0.4667 16 7 8.0830 -3.8566 0.8651 17 6 9.4225 -3.9320 0.9936 18 8 10.1274 -3.9301 0.0066 19 6 10.0444 -4.0176 2.3636 20 8 11.4661 -4.0881 2.2377 21 6 12.1844 -4.1698 3.3892 22 6 13.5647 -4.2479 3.3789 23 6 14.1355 -4.3196 4.6009 24 16 12.8317 -4.2937 5.7228 25 7 11.6052 -4.1840 4.5567 26 6 5.3549 -2.4724 -0.2272 27 1 -0.4849 0.8401 -0.0004 28 1 2.1493 -3.5267 0.0145 29 1 3.2702 -5.7081 -0.1897 30 1 5.7197 -5.8204 -0.4050 31 1 7.7494 -4.6563 -1.0449 32 1 7.8421 -2.8801 -0.9753 33 1 7.5192 -3.8578 1.6545 34 1 9.7738 -3.1338 2.9413 35 1 9.6803 -4.9100 2.8728 36 1 14.1414 -4.2478 2.4657 37 1 15.1898 -4.3841 4.8264 38 1 5.9409 -1.5652 -0.2382 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411786628.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:05 Heat of formation + Delta-G solvation = -44.387664 kcal Electronic energy + Delta-G solvation = -24081.568502 eV Core-core repulsion = 20209.702567 eV Total energy + Delta-G solvation = -3871.865935 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.55631 -41.02429 -40.39499 -38.62320 -37.62993 -35.87600 -34.46706 -32.55774 -32.18369 -31.11088 -30.01837 -27.43541 -26.72655 -25.06861 -23.35446 -22.34353 -21.85516 -21.58124 -19.78869 -19.42962 -18.99755 -18.70547 -17.95857 -17.75712 -17.02271 -16.84042 -16.74100 -16.10795 -15.78023 -15.67418 -15.49280 -15.23975 -14.95320 -14.63577 -14.36758 -14.32126 -14.16747 -13.88777 -13.70566 -13.43512 -13.12646 -12.61873 -12.48895 -12.40494 -12.27643 -12.22909 -11.95921 -11.72339 -11.34816 -11.17937 -10.92613 -10.77261 -10.25878 -9.81913 -9.32988 -9.14486 -8.51361 -6.24112 -0.26997 0.27775 0.43083 0.62686 0.72914 1.30855 1.33920 1.36986 1.44251 1.50323 1.54345 2.26207 2.52017 2.79002 2.96522 3.13576 3.53784 3.71945 3.74981 4.00477 4.04868 4.05739 4.24986 4.37583 4.38866 4.47309 4.54827 4.62656 4.68898 4.80469 4.90266 5.09751 5.16540 5.21689 5.35777 5.60467 5.66723 5.73249 5.87478 5.93163 6.17215 6.36574 6.83065 7.01519 7.56706 8.59936 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.016124 B = 0.001974 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.122536 B =14181.149187 C =15009.962884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.010 3.990 3 Si 0.969 3.031 4 H -0.268 1.268 5 H -0.268 1.268 6 H -0.263 1.263 7 C -0.398 4.398 8 H 0.084 0.916 9 O -0.245 6.245 10 C 0.118 3.882 11 C -0.226 4.226 12 C -0.074 4.074 13 C -0.157 4.157 14 C -0.062 4.062 15 C 0.175 3.825 16 N -0.706 5.706 17 C 0.519 3.481 18 O -0.565 6.565 19 C 0.056 3.944 20 O -0.290 6.290 21 C 0.296 3.704 22 C -0.224 4.224 23 C -0.156 4.156 24 S 0.305 5.695 25 N -0.567 5.567 26 C -0.169 4.169 27 H 0.284 0.716 28 H 0.110 0.890 29 H 0.144 0.856 30 H 0.151 0.849 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.417 0.583 34 H 0.111 0.889 35 H 0.116 0.884 36 H 0.177 0.823 37 H 0.232 0.768 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.870 -11.393 10.249 31.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.188 4.188 3 Si 0.791 3.209 4 H -0.193 1.193 5 H -0.193 1.193 6 H -0.187 1.187 7 C -0.474 4.474 8 H 0.101 0.899 9 O -0.152 6.152 10 C 0.069 3.931 11 C -0.246 4.246 12 C -0.092 4.092 13 C -0.176 4.176 14 C -0.063 4.063 15 C 0.053 3.947 16 N -0.359 5.359 17 C 0.305 3.695 18 O -0.444 6.444 19 C -0.023 4.023 20 O -0.196 6.196 21 C 0.082 3.918 22 C -0.259 4.259 23 C -0.303 4.303 24 S 0.453 5.547 25 N -0.408 5.408 26 C -0.189 4.189 27 H 0.094 0.906 28 H 0.128 0.872 29 H 0.162 0.838 30 H 0.168 0.832 31 H 0.109 0.891 32 H 0.091 0.909 33 H 0.253 0.747 34 H 0.128 0.872 35 H 0.134 0.866 36 H 0.194 0.806 37 H 0.248 0.752 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 27.073 -11.040 10.979 31.231 hybrid contribution -0.312 0.809 -1.349 1.604 sum 26.761 -10.231 9.630 30.225 Atomic orbital electron populations 1.69724 1.06836 1.29566 1.50058 1.25257 0.95868 1.02089 0.95628 0.85244 0.78824 0.77634 0.79193 1.19267 1.19295 1.18714 1.20697 0.78018 0.96124 1.52574 0.89876 1.83520 1.21277 1.27391 1.83059 1.19588 0.92978 0.85249 0.95287 1.21414 1.00459 0.93285 1.09436 1.21152 0.95241 0.96420 0.96392 1.21052 0.93138 0.98258 1.05169 1.19424 0.94443 0.92025 1.00363 1.20106 0.87088 1.03441 0.84107 1.45811 1.05672 1.74114 1.10308 1.20308 0.82563 0.76096 0.90522 1.90737 1.62196 1.50567 1.40867 1.22389 0.78716 1.06416 0.94735 1.86307 1.19439 1.88093 1.25761 1.20652 0.90946 0.95556 0.84604 1.20588 0.90632 1.12379 1.02310 1.27008 1.07942 0.99896 0.95451 1.83971 0.90201 1.68147 1.12393 1.76387 1.27773 1.33566 1.03038 1.20291 0.90600 0.98906 1.09091 0.90590 0.87203 0.83793 0.83170 0.89145 0.90946 0.74655 0.87165 0.86601 0.80553 0.75157 0.85826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.30 13.96 21.61 0.30 -54.00 16 2 C 0.01 0.58 5.49 84.83 0.47 1.05 16 3 Si 0.97 44.96 28.62 68.60 1.96 46.93 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 6 H -0.26 -12.15 7.11 99.48 0.71 -11.45 16 7 C -0.40 -22.88 9.95 67.92 0.68 -22.20 16 8 H 0.08 4.98 5.44 -2.91 -0.02 4.97 16 9 O -0.24 -12.89 8.59 -22.74 -0.20 -13.09 16 10 C 0.12 5.22 6.65 22.58 0.15 5.37 16 11 C -0.23 -9.26 9.17 22.39 0.21 -9.05 16 12 C -0.07 -2.27 10.04 22.25 0.22 -2.05 16 13 C -0.16 -4.07 9.70 22.30 0.22 -3.86 16 14 C -0.06 -1.71 5.25 -19.88 -0.10 -1.82 16 15 C 0.18 4.08 5.80 85.64 0.50 4.58 16 16 N -0.71 -14.54 5.55 -466.78 -2.59 -17.13 16 17 C 0.52 12.34 7.91 87.66 0.69 13.03 16 18 O -0.57 -18.22 16.50 16.01 0.26 -17.96 16 19 C 0.06 1.09 5.87 71.24 0.42 1.50 16 20 O -0.29 -6.82 9.71 -74.03 -0.72 -7.53 16 21 C 0.30 5.86 7.42 84.92 0.63 6.49 16 22 C -0.22 -3.07 10.20 21.54 0.22 -2.85 16 23 C -0.16 -1.21 11.41 67.09 0.77 -0.44 16 24 S 0.30 3.63 23.71 -56.49 -1.34 2.29 16 25 N -0.57 -11.04 11.14 -176.09 -1.96 -13.00 16 26 C -0.17 -6.02 9.65 22.39 0.22 -5.80 16 27 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 28 H 0.11 5.00 5.64 -2.91 -0.02 4.98 16 29 H 0.14 3.53 8.06 -2.91 -0.02 3.50 16 30 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16 31 H 0.09 1.95 8.09 -2.38 -0.02 1.93 16 32 H 0.07 1.82 8.08 -2.39 -0.02 1.80 16 33 H 0.42 7.00 8.46 -92.71 -0.78 6.21 16 34 H 0.11 1.88 8.14 -2.38 -0.02 1.87 16 35 H 0.12 1.82 8.14 -2.38 -0.02 1.80 16 36 H 0.18 1.94 8.06 -2.91 -0.02 1.92 16 37 H 0.23 -0.23 8.06 -2.91 -0.02 -0.25 16 38 H 0.12 4.23 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -74.22 354.17 1.33 -72.88 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 0.34 Total: 16.66 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: 5.27 Total: -16.05 kcal Atomic # 7 Polarization: -79.88 SS G_CDS: -4.25 Total: -84.13 kcal Atomic # 8 Polarization: -37.93 SS G_CDS: -0.65 Total: -38.58 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.96 Total: 46.93 kcal Atomic # 16 Polarization: 3.63 SS G_CDS: -1.34 Total: 2.29 kcal Total: -74.22 1.33 -72.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411786628.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.494 kcal (2) G-P(sol) polarization free energy of solvation -74.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds