Wall clock time and date at job start Tue Mar 31 2020 17:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30641 * 1 3 3 Si 1.86803 * 119.99990 * 2 1 4 4 H 1.48498 * 109.47236 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.46959 * 119.99939 * 3 2 1 6 6 H 1.48498 * 109.46994 * 239.99883 * 3 2 1 7 7 C 1.40312 * 119.99714 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99677 * 145.50064 * 7 2 1 9 9 C 1.40503 * 119.99881 * 325.49519 * 7 2 1 10 10 C 1.44198 * 123.72393 * 356.20450 * 9 7 2 11 11 C 1.32747 * 114.43407 * 179.82950 * 10 9 7 12 12 S 1.75465 * 111.37402 * 0.42971 * 11 10 9 13 13 C 1.39584 * 123.71763 * 176.50044 * 9 7 2 14 14 C 1.46181 * 125.23064 * 359.97438 * 13 9 7 15 15 O 1.21782 * 119.99834 * 359.97438 * 14 13 9 16 16 N 1.34778 * 120.00231 * 179.97438 * 14 13 9 17 17 C 1.39912 * 120.00208 * 174.66447 * 16 14 13 18 18 C 1.38519 * 120.01316 * 335.68157 * 17 16 14 19 19 C 1.39562 * 119.79735 * 179.74576 * 18 17 16 20 20 C 1.47736 * 120.08413 * 180.23177 * 19 18 17 21 21 N 1.34773 * 120.00138 * 180.29169 * 20 19 18 22 22 O 1.21573 * 120.00122 * 0.29647 * 20 19 18 23 23 C 1.39665 * 119.82851 * 0.52595 * 19 18 17 24 24 C 1.37920 * 120.01945 * 359.72494 * 23 19 18 25 25 C 1.38484 * 120.19978 * 0.02562 * 24 23 19 26 26 F 1.35096 * 119.90938 * 179.97438 * 25 24 23 27 27 H 0.96994 * 120.00457 * 174.66526 * 1 2 3 28 28 H 1.08006 * 122.77671 * 0.03538 * 10 9 7 29 29 H 1.08008 * 124.31393 * 180.18088 * 11 10 9 30 30 H 0.97006 * 119.99859 * 354.66686 * 16 14 13 31 31 H 1.08000 * 120.09864 * 359.97438 * 18 17 16 32 32 H 0.97009 * 119.99777 * 0.02562 * 21 20 19 33 33 H 0.97000 * 120.00258 * 179.97438 * 21 20 19 34 34 H 1.07997 * 119.99174 * 179.70872 * 23 19 18 35 35 H 1.07995 * 119.89627 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 1.2755 2.7465 -0.0006 5 1 3.0941 1.6964 1.2125 6 1 3.0942 1.6964 -1.2125 7 6 2.0079 -1.2152 0.0005 8 1 2.9454 -1.2976 -0.5292 9 6 1.4907 -2.3246 0.6903 10 6 0.2898 -2.2830 1.4874 11 6 -0.0325 -3.4387 2.0555 12 16 1.1333 -4.6905 1.6646 13 6 2.0860 -3.5871 0.6844 14 6 3.3136 -3.9372 -0.0278 15 8 3.8996 -3.0937 -0.6822 16 7 3.7970 -5.1935 0.0398 17 6 4.9074 -5.5582 -0.7294 18 6 5.2057 -4.8620 -1.8892 19 6 6.3174 -5.2262 -2.6502 20 6 6.6444 -4.4848 -3.8855 21 7 7.7149 -4.8417 -4.6223 22 8 5.9477 -3.5527 -4.2374 23 6 7.1165 -6.2973 -2.2442 24 6 6.8098 -6.9888 -1.0910 25 6 5.7099 -6.6249 -0.3323 26 9 5.4145 -7.3066 0.7961 27 1 -0.4850 -0.8363 -0.0781 28 1 -0.3004 -1.3867 1.6092 29 1 -0.8995 -3.5883 2.6820 30 1 3.3751 -5.8449 0.6218 31 1 4.5819 -4.0375 -2.2015 32 1 8.2706 -5.5857 -4.3417 33 1 7.9294 -4.3551 -5.4336 34 1 7.9747 -6.5844 -2.8337 35 1 7.4293 -7.8164 -0.7787 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001415021482.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:26 Heat of formation + Delta-G solvation = -95.083672 kcal Electronic energy + Delta-G solvation = -25259.322484 eV Core-core repulsion = 21261.797901 eV Total energy + Delta-G solvation = -3997.524584 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 334.057 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.06354 -41.54724 -40.53034 -39.01662 -38.22533 -35.77614 -35.07115 -34.73382 -31.91222 -31.40079 -30.41748 -27.76923 -25.26607 -24.90270 -23.91093 -22.19449 -21.63595 -21.01914 -20.10645 -19.17188 -18.55389 -18.36125 -17.91354 -17.65892 -16.90875 -16.69074 -16.21691 -15.93301 -15.85978 -15.75834 -15.66674 -15.20233 -15.05266 -14.87697 -14.29086 -14.09912 -13.88831 -13.80073 -13.58068 -13.31010 -12.87208 -12.64866 -12.55362 -12.15322 -11.96065 -11.68398 -11.58922 -11.30352 -11.00062 -10.77183 -10.45488 -9.95734 -9.74723 -9.53348 -9.33170 -9.10843 -6.65451 -0.46261 0.01952 0.27415 1.16251 1.28056 1.41835 1.59494 1.63831 1.75122 1.87095 2.08383 2.15815 2.30448 2.46456 2.68487 3.00433 3.03457 3.61755 3.81441 4.01209 4.04884 4.14317 4.37823 4.50266 4.71961 4.87154 4.92342 5.02721 5.11146 5.18089 5.19594 5.26447 5.35704 5.71855 5.75474 5.84322 5.87010 6.35983 6.37527 6.40904 6.69340 7.27964 7.44309 7.56589 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.011089 B = 0.004310 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.353168 B = 6494.559062 C = 8609.687026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.751 5.751 2 C 0.011 3.989 3 Si 1.113 2.887 4 H -0.248 1.248 5 H -0.261 1.261 6 H -0.267 1.267 7 C -0.450 4.450 8 H 0.092 0.908 9 C 0.086 3.914 10 C -0.180 4.180 11 C -0.157 4.157 12 S 0.011 5.989 13 C -0.495 4.495 14 C 0.583 3.417 15 O -0.579 6.579 16 N -0.677 5.677 17 C 0.109 3.891 18 C -0.086 4.086 19 C -0.137 4.137 20 C 0.560 3.440 21 N -0.818 5.818 22 O -0.592 6.592 23 C -0.063 4.063 24 C -0.116 4.116 25 C 0.072 3.928 26 F -0.136 7.136 27 H 0.298 0.702 28 H 0.139 0.861 29 H 0.186 0.814 30 H 0.411 0.589 31 H 0.122 0.878 32 H 0.421 0.579 33 H 0.415 0.585 34 H 0.194 0.806 35 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.408 -12.541 -2.301 17.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.371 5.371 2 C -0.214 4.214 3 Si 0.928 3.072 4 H -0.172 1.172 5 H -0.185 1.185 6 H -0.192 1.192 7 C -0.478 4.478 8 H 0.110 0.890 9 C 0.076 3.924 10 C -0.213 4.213 11 C -0.291 4.291 12 S 0.266 5.734 13 C -0.612 4.612 14 C 0.384 3.616 15 O -0.466 6.466 16 N -0.320 5.320 17 C 0.012 3.988 18 C -0.108 4.108 19 C -0.141 4.141 20 C 0.346 3.654 21 N -0.384 5.384 22 O -0.473 6.473 23 C -0.083 4.083 24 C -0.134 4.134 25 C 0.050 3.950 26 F -0.115 7.115 27 H 0.111 0.889 28 H 0.156 0.844 29 H 0.204 0.796 30 H 0.247 0.753 31 H 0.139 0.861 32 H 0.255 0.745 33 H 0.247 0.753 34 H 0.211 0.789 35 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 12.025 -11.337 -2.329 16.690 hybrid contribution -0.607 -0.578 -0.038 0.839 sum 11.417 -11.915 -2.367 16.671 Atomic orbital electron populations 1.70551 1.08738 1.34368 1.23493 1.28909 0.95607 1.07634 0.89257 0.83063 0.75195 0.69577 0.79320 1.17171 1.18507 1.19229 1.21337 1.07815 0.95448 1.23229 0.89016 1.18234 0.90747 0.91585 0.91848 1.21630 0.98669 0.99331 1.01686 1.25490 1.03451 0.95978 1.04161 1.82418 1.21579 1.15129 1.54267 1.22391 1.09822 0.98890 1.30138 1.17112 0.83704 0.80456 0.80298 1.90611 1.61199 1.49339 1.45403 1.43266 1.30394 1.12978 1.45361 1.18022 0.90773 0.97215 0.92793 1.21335 0.98235 0.99443 0.91820 1.19892 0.97873 0.99754 0.96621 1.18331 0.81010 0.82390 0.83649 1.43394 1.28585 1.38030 1.28355 1.90868 1.52405 1.31639 1.72366 1.21513 0.99122 0.91679 0.95941 1.21342 0.95056 1.02465 0.94575 1.17891 0.97064 0.94051 0.86010 1.91477 1.93114 1.78149 1.48722 0.88851 0.84383 0.79635 0.75294 0.86066 0.74511 0.75271 0.78919 0.79067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -37.00 12.22 21.89 0.27 -36.73 16 2 C 0.01 0.54 5.13 85.37 0.44 0.98 16 3 Si 1.11 43.37 30.05 68.60 2.06 45.43 16 4 H -0.25 -8.77 7.11 99.48 0.71 -8.07 16 5 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 6 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 7 C -0.45 -25.49 8.63 23.33 0.20 -25.29 16 8 H 0.09 5.72 5.69 -2.91 -0.02 5.70 16 9 C 0.09 4.68 5.69 -20.89 -0.12 4.56 16 10 C -0.18 -8.48 8.52 22.61 0.19 -8.28 16 11 C -0.16 -6.30 11.06 66.64 0.74 -5.56 16 12 S 0.01 0.45 22.26 -56.49 -1.26 -0.81 16 13 C -0.49 -26.00 6.50 24.66 0.16 -25.84 16 14 C 0.58 30.83 7.57 86.31 0.65 31.48 16 15 O -0.58 -34.37 11.40 -4.61 -0.05 -34.43 16 16 N -0.68 -29.31 5.30 -307.39 -1.63 -30.94 16 17 C 0.11 4.17 6.44 38.17 0.25 4.41 16 18 C -0.09 -3.51 8.26 22.66 0.19 -3.32 16 19 C -0.14 -4.02 5.87 -20.10 -0.12 -4.14 16 20 C 0.56 16.58 8.04 86.75 0.70 17.28 16 21 N -0.82 -12.21 8.82 -175.67 -1.55 -13.76 16 22 O -0.59 -25.27 17.18 -3.95 -0.07 -25.34 16 23 C -0.06 -1.07 9.53 22.54 0.21 -0.86 16 24 C -0.12 -2.10 10.00 22.25 0.22 -1.87 16 25 C 0.07 2.06 7.31 22.58 0.17 2.23 16 26 F -0.14 -3.84 16.79 44.97 0.76 -3.09 16 27 H 0.30 14.87 6.37 -92.71 -0.59 14.28 16 28 H 0.14 6.35 5.91 -2.91 -0.02 6.33 16 29 H 0.19 5.73 8.06 -2.91 -0.02 5.71 16 30 H 0.41 16.02 7.52 -92.70 -0.70 15.33 16 31 H 0.12 6.31 5.32 -2.91 -0.02 6.30 16 32 H 0.42 2.32 6.85 -92.70 -0.64 1.68 16 33 H 0.41 5.17 8.93 -92.71 -0.83 4.34 16 34 H 0.19 0.88 6.39 -2.91 -0.02 0.86 16 35 H 0.19 1.68 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -80.21 323.01 1.66 -78.54 By element: Atomic # 1 Polarization: 36.07 SS G_CDS: -0.74 Total: 35.33 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: 3.88 Total: -14.22 kcal Atomic # 7 Polarization: -78.52 SS G_CDS: -2.91 Total: -81.43 kcal Atomic # 8 Polarization: -59.64 SS G_CDS: -0.12 Total: -59.77 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.76 Total: -3.09 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.06 Total: 45.43 kcal Atomic # 16 Polarization: 0.45 SS G_CDS: -1.26 Total: -0.81 kcal Total: -80.21 1.66 -78.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001415021482.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.539 kcal (2) G-P(sol) polarization free energy of solvation -80.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds