Wall clock time and date at job start Tue Mar 31 2020 17:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35947 * 116.99660 * 2 1 4 4 C 1.38271 * 121.63965 * 180.02562 * 3 2 1 5 5 C 1.35054 * 114.72507 * 180.02562 * 4 3 2 6 6 C 1.50702 * 127.19614 * 179.97438 * 5 4 3 7 7 S 1.81404 * 109.47258 * 89.99915 * 6 5 4 8 8 O 1.42097 * 110.54282 * 68.36916 * 7 6 5 9 9 O 1.42102 * 110.53914 * 291.62241 * 7 6 5 10 10 N 1.65600 * 104.45111 * 179.97438 * 7 6 5 11 11 C 1.47576 * 134.49351 * 89.99529 * 10 7 6 12 12 C 1.53946 * 86.11846 * 155.35862 * 11 10 7 13 13 O 1.42894 * 113.74258 * 269.15648 * 12 11 10 14 14 C 1.50696 * 113.73834 * 137.95019 * 12 11 10 15 15 H 1.07999 * 120.00319 * 1.93267 * 14 12 11 16 16 C 1.37885 * 119.99717 * 181.92651 * 14 12 11 17 17 N 1.31516 * 119.99913 * 180.02562 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 0.02562 * 16 14 12 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.47805 * 134.45533 * 269.86513 * 10 7 6 23 23 S 1.72018 * 105.60276 * 0.23658 * 5 4 3 24 24 N 1.30339 * 121.64354 * 0.02562 * 3 2 1 25 25 H 1.08998 * 109.47448 * 59.99469 * 1 2 3 26 26 H 1.09004 * 109.47019 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46942 * 299.99790 * 1 2 3 28 28 H 1.08008 * 122.63312 * 0.04012 * 4 3 2 29 29 H 1.08999 * 109.47521 * 329.99603 * 6 5 4 30 30 H 1.09004 * 109.46698 * 209.99731 * 6 5 4 31 31 H 1.08999 * 113.76805 * 41.05935 * 11 10 7 32 32 H 1.09000 * 113.87378 * 269.67476 * 11 10 7 33 33 H 0.96701 * 113.99575 * 178.07128 * 13 12 11 34 34 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 35 35 H 1.09008 * 113.77106 * 90.37669 * 22 10 7 36 36 H 1.08997 * 113.84172 * 318.91640 * 22 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 3.4243 1.3233 -0.0005 5 6 3.8880 2.5917 0.0001 6 6 5.3283 3.0352 0.0003 7 16 5.9062 3.2139 -1.7099 8 8 5.2591 4.3092 -2.3430 9 8 5.9873 1.9448 -2.3440 10 7 7.4826 3.7000 -1.5647 11 6 8.7774 2.9976 -1.4743 12 6 9.3992 4.2912 -2.0311 13 8 9.4909 4.3181 -3.4568 14 6 10.6848 4.6874 -1.3520 15 1 11.1001 4.0626 -0.5752 16 6 11.3310 5.8477 -1.7227 17 7 12.4533 6.1933 -1.1304 18 14 10.6125 6.9286 -3.0660 19 1 11.1489 6.5032 -4.3837 20 1 9.1332 6.7981 -3.0682 21 1 10.9841 8.3442 -2.8139 22 6 8.1573 5.0121 -1.4761 23 16 2.4909 3.5951 0.0082 24 7 1.3678 2.3243 0.0005 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 4.0785 0.4638 -0.0016 29 1 5.9375 2.2913 0.5138 30 1 5.4136 3.9925 0.5146 31 1 8.8622 2.1444 -2.1473 32 1 9.0837 2.7667 -0.4540 33 1 9.8538 5.1410 -3.8121 34 1 12.9080 7.0093 -1.3914 35 1 8.2796 5.3753 -0.4556 36 1 7.7481 5.7644 -2.1505 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001423974089.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:10 Heat of formation + Delta-G solvation = -51.748349 kcal Electronic energy + Delta-G solvation = -24294.358723 eV Core-core repulsion = 20421.784461 eV Total energy + Delta-G solvation = -3872.574261 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 334.054 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.45729 -38.98062 -37.27297 -36.94123 -35.79495 -34.52285 -33.32664 -32.56244 -29.16465 -28.26350 -27.56111 -25.75095 -24.73258 -23.44411 -20.65068 -19.95934 -18.80252 -18.46743 -17.77026 -17.60261 -17.20813 -16.55676 -16.36912 -16.25048 -15.78648 -15.18838 -14.72226 -14.18038 -14.04317 -13.86241 -13.70010 -13.44602 -13.30353 -13.11525 -12.65409 -12.36569 -12.29291 -11.96612 -11.90611 -11.87627 -11.79037 -11.43382 -11.21293 -11.15180 -11.02724 -10.93664 -10.57114 -10.14965 -9.79411 -9.39881 -9.10843 -8.81912 -8.64981 -8.42196 -6.44485 -4.50862 -0.08988 0.55137 0.98257 1.36267 2.11416 2.65037 2.83011 3.00827 3.06716 3.16636 3.77780 4.02877 4.03338 4.09727 4.57030 4.62181 4.67522 4.81730 4.90653 4.94815 5.04914 5.20394 5.27161 5.39579 5.57987 5.61197 5.81093 5.97130 6.08398 6.30185 6.35561 6.50141 6.73553 7.01403 7.25070 8.01417 8.51544 8.58280 9.13399 10.67294 Molecular weight = 334.05amu Principal moments of inertia in cm(-1) A = 0.032539 B = 0.002932 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.311111 B = 9546.570674 C = 9721.928666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.292 6.292 3 C 0.313 3.687 4 C -0.191 4.191 5 C -0.157 4.157 6 C -0.571 4.571 7 S 2.617 3.383 8 O -0.943 6.943 9 O -0.942 6.942 10 N -1.023 6.023 11 C 0.142 3.858 12 C 0.202 3.798 13 O -0.552 6.552 14 C -0.536 4.536 15 H 0.092 0.908 16 C 0.081 3.919 17 N -0.876 5.876 18 Si 0.852 3.148 19 H -0.266 1.266 20 H -0.251 1.251 21 H -0.283 1.283 22 C 0.085 3.915 23 S 0.319 5.681 24 N -0.528 5.528 25 H 0.061 0.939 26 H 0.103 0.897 27 H 0.060 0.940 28 H 0.174 0.826 29 H 0.155 0.845 30 H 0.150 0.850 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.353 0.647 34 H 0.271 0.729 35 H 0.094 0.906 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.714 -6.632 5.216 19.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.198 6.198 3 C 0.100 3.900 4 C -0.228 4.228 5 C -0.288 4.288 6 C -0.696 4.696 7 S 2.709 3.291 8 O -0.933 6.933 9 O -0.933 6.933 10 N -0.864 5.864 11 C 0.017 3.983 12 C 0.159 3.841 13 O -0.363 6.363 14 C -0.575 4.575 15 H 0.110 0.890 16 C -0.125 4.125 17 N -0.511 5.511 18 Si 0.680 3.320 19 H -0.192 1.192 20 H -0.176 1.176 21 H -0.209 1.209 22 C -0.041 4.041 23 S 0.469 5.531 24 N -0.369 5.369 25 H 0.080 0.920 26 H 0.121 0.879 27 H 0.079 0.921 28 H 0.191 0.809 29 H 0.173 0.827 30 H 0.168 0.832 31 H 0.101 0.899 32 H 0.113 0.887 33 H 0.205 0.795 34 H 0.081 0.919 35 H 0.112 0.888 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -19.884 -5.979 4.527 21.252 hybrid contribution 0.782 -0.211 0.217 0.838 sum -19.103 -6.190 4.744 20.633 Atomic orbital electron populations 1.23005 0.76683 1.03689 1.02626 1.86299 1.22997 1.22369 1.88159 1.19999 0.89799 0.85247 0.94990 1.20321 0.93169 0.98944 1.10414 1.24287 1.00374 0.98310 1.05809 1.29641 0.97054 1.11715 1.31178 1.05100 0.73006 0.74481 0.76561 1.93585 1.74835 1.53774 1.71140 1.93580 1.85424 1.43160 1.71100 1.60322 1.19241 1.18918 1.87886 1.22985 0.77123 0.97224 1.00933 1.20532 0.92228 0.92072 0.79270 1.86460 1.86520 1.41514 1.21822 1.21267 1.05466 1.08616 1.22128 0.89006 1.25003 0.94438 0.97189 0.95874 1.69854 1.15861 1.24504 1.40923 0.87428 0.80832 0.80864 0.82856 1.19209 1.17641 1.20927 1.24343 0.92725 0.84914 1.02086 1.84191 0.88593 1.11912 1.68412 1.76469 1.26478 1.01353 1.32556 0.92016 0.87902 0.92124 0.80904 0.82681 0.83203 0.89914 0.88720 0.79501 0.91876 0.88802 0.90567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.47 101.05 1.06 1.33 16 2 O -0.29 -3.29 10.54 -19.57 -0.21 -3.50 16 3 C 0.31 3.95 7.42 -18.17 -0.13 3.81 16 4 C -0.19 -2.32 10.15 -40.70 -0.41 -2.73 16 5 C -0.16 -1.93 5.85 -35.44 -0.21 -2.14 16 6 C -0.57 -6.35 6.75 36.01 0.24 -6.11 16 7 S 2.62 42.21 5.91 -107.50 -0.64 41.57 16 8 O -0.94 -17.65 18.02 -57.54 -1.04 -18.69 16 9 O -0.94 -17.52 18.02 -57.54 -1.04 -18.56 16 10 N -1.02 -17.81 4.00 -118.52 -0.47 -18.28 16 11 C 0.14 2.55 8.31 -2.97 -0.02 2.53 16 12 C 0.20 4.37 1.06 -90.85 -0.10 4.27 16 13 O -0.55 -12.72 13.35 -35.23 -0.47 -13.19 16 14 C -0.54 -13.08 9.19 -34.44 -0.32 -13.40 16 15 H 0.09 2.36 8.06 -52.49 -0.42 1.94 16 16 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 17 N -0.88 -23.75 13.96 55.43 0.77 -22.98 16 18 Si 0.85 18.44 24.31 -169.99 -4.13 14.31 16 19 H -0.27 -5.64 7.05 56.52 0.40 -5.24 16 20 H -0.25 -5.13 5.16 56.52 0.29 -4.84 16 21 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 22 C 0.08 1.60 7.40 -2.84 -0.02 1.58 16 23 S 0.32 3.89 23.71 -107.50 -2.55 1.34 16 24 N -0.53 -6.85 11.14 28.92 0.32 -6.53 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.17 1.77 8.06 -52.48 -0.42 1.34 16 29 H 0.16 1.32 8.14 -51.92 -0.42 0.89 16 30 H 0.15 1.32 8.14 -51.92 -0.42 0.90 16 31 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 32 H 0.09 1.43 8.09 -51.93 -0.42 1.01 16 33 H 0.35 7.78 3.57 45.56 0.16 7.94 16 34 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 35 H 0.09 1.56 8.09 -51.92 -0.42 1.14 16 36 H 0.08 1.47 6.83 -51.93 -0.35 1.11 16 LS Contribution 334.18 15.07 5.04 5.04 Total: -1.00 -32.03 334.18 -8.08 -40.11 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -3.66 Total: 8.26 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: -0.01 Total: -8.91 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: 0.62 Total: -47.78 kcal Atomic # 8 Polarization: -51.19 SS G_CDS: -2.75 Total: -53.94 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -4.13 Total: 14.31 kcal Atomic # 16 Polarization: 46.10 SS G_CDS: -3.18 Total: 42.91 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.03 -8.08 -40.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001423974089.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.636 kcal (2) G-P(sol) polarization free energy of solvation -32.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds