Wall clock time and date at job start Tue Mar 31 2020 17:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35947 * 116.99660 * 2 1 4 4 C 1.38271 * 121.63965 * 180.02562 * 3 2 1 5 5 C 1.35054 * 114.72507 * 180.02562 * 4 3 2 6 6 C 1.50702 * 127.19614 * 179.97438 * 5 4 3 7 7 S 1.81404 * 109.47258 * 89.99915 * 6 5 4 8 8 O 1.42097 * 110.54282 * 68.36916 * 7 6 5 9 9 O 1.42102 * 110.53914 * 291.62241 * 7 6 5 10 10 N 1.65600 * 104.45111 * 179.97438 * 7 6 5 11 11 C 1.47576 * 134.49351 * 89.99529 * 10 7 6 12 12 C 1.53946 * 86.11846 * 155.35862 * 11 10 7 13 13 O 1.42894 * 113.74258 * 269.15648 * 12 11 10 14 14 C 1.50696 * 113.73834 * 137.95019 * 12 11 10 15 15 H 1.07999 * 120.00319 * 1.93267 * 14 12 11 16 16 C 1.37885 * 119.99717 * 181.92651 * 14 12 11 17 17 N 1.31516 * 119.99913 * 180.02562 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 0.02562 * 16 14 12 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.47805 * 134.45533 * 269.86513 * 10 7 6 23 23 S 1.72018 * 105.60276 * 0.23658 * 5 4 3 24 24 N 1.30339 * 121.64354 * 0.02562 * 3 2 1 25 25 H 1.08998 * 109.47448 * 59.99469 * 1 2 3 26 26 H 1.09004 * 109.47019 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46942 * 299.99790 * 1 2 3 28 28 H 1.08008 * 122.63312 * 0.04012 * 4 3 2 29 29 H 1.08999 * 109.47521 * 329.99603 * 6 5 4 30 30 H 1.09004 * 109.46698 * 209.99731 * 6 5 4 31 31 H 1.08999 * 113.76805 * 41.05935 * 11 10 7 32 32 H 1.09000 * 113.87378 * 269.67476 * 11 10 7 33 33 H 0.96701 * 113.99575 * 178.07128 * 13 12 11 34 34 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 35 35 H 1.09008 * 113.77106 * 90.37669 * 22 10 7 36 36 H 1.08997 * 113.84172 * 318.91640 * 22 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 3.4243 1.3233 -0.0005 5 6 3.8880 2.5917 0.0001 6 6 5.3283 3.0352 0.0003 7 16 5.9062 3.2139 -1.7099 8 8 5.2591 4.3092 -2.3430 9 8 5.9873 1.9448 -2.3440 10 7 7.4826 3.7000 -1.5647 11 6 8.7774 2.9976 -1.4743 12 6 9.3992 4.2912 -2.0311 13 8 9.4909 4.3181 -3.4568 14 6 10.6848 4.6874 -1.3520 15 1 11.1001 4.0626 -0.5752 16 6 11.3310 5.8477 -1.7227 17 7 12.4533 6.1933 -1.1304 18 14 10.6125 6.9286 -3.0660 19 1 11.1489 6.5032 -4.3837 20 1 9.1332 6.7981 -3.0682 21 1 10.9841 8.3442 -2.8139 22 6 8.1573 5.0121 -1.4761 23 16 2.4909 3.5951 0.0082 24 7 1.3678 2.3243 0.0005 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 4.0785 0.4638 -0.0016 29 1 5.9375 2.2913 0.5138 30 1 5.4136 3.9925 0.5146 31 1 8.8622 2.1444 -2.1473 32 1 9.0837 2.7667 -0.4540 33 1 9.8538 5.1410 -3.8121 34 1 12.9080 7.0093 -1.3914 35 1 8.2796 5.3753 -0.4556 36 1 7.7481 5.7644 -2.1505 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001423974089.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:09 Heat of formation + Delta-G solvation = -81.015093 kcal Electronic energy + Delta-G solvation = -24295.627824 eV Core-core repulsion = 20421.784461 eV Total energy + Delta-G solvation = -3873.843362 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 334.054 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.32000 -40.51556 -38.29631 -38.11644 -37.13710 -36.18459 -34.47406 -34.26648 -30.11143 -29.81696 -28.33943 -27.18873 -26.39749 -24.33630 -21.68807 -21.45451 -20.03315 -19.49379 -19.36638 -18.63077 -18.57914 -18.06823 -17.60853 -17.24036 -17.11776 -16.03379 -15.78828 -15.72425 -15.44974 -15.22524 -14.80821 -14.71823 -14.41161 -14.34241 -14.15352 -13.86727 -13.43714 -13.33447 -13.25802 -12.93740 -12.79829 -12.71130 -12.62907 -12.33673 -12.31106 -12.05810 -11.94814 -11.89139 -11.08400 -10.90565 -10.79221 -10.48688 -9.88245 -9.54044 -8.37262 -6.46565 -1.24286 -0.44702 0.07194 0.44709 1.19716 1.28569 1.33539 1.41999 1.44514 1.97228 2.22214 2.69715 2.81944 2.91701 3.05642 3.31709 3.64662 3.73681 4.01588 4.07424 4.19698 4.26625 4.30244 4.41863 4.52297 4.60351 4.64190 4.67079 4.84987 4.94801 4.98161 5.03286 5.32169 5.67579 5.91030 6.11671 6.62358 6.78186 7.21431 8.77428 Molecular weight = 334.05amu Principal moments of inertia in cm(-1) A = 0.032539 B = 0.002932 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.311111 B = 9546.570674 C = 9721.928666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.301 6.301 3 C 0.304 3.696 4 C -0.192 4.192 5 C -0.170 4.170 6 C -0.540 4.540 7 S 2.619 3.381 8 O -0.976 6.976 9 O -0.974 6.974 10 N -1.029 6.029 11 C 0.147 3.853 12 C 0.175 3.825 13 O -0.566 6.566 14 C -0.532 4.532 15 H 0.068 0.932 16 C 0.031 3.969 17 N -0.923 5.923 18 Si 0.902 3.098 19 H -0.261 1.261 20 H -0.232 1.232 21 H -0.284 1.284 22 C 0.091 3.909 23 S 0.320 5.680 24 N -0.541 5.541 25 H 0.057 0.943 26 H 0.133 0.867 27 H 0.062 0.938 28 H 0.192 0.808 29 H 0.192 0.808 30 H 0.182 0.818 31 H 0.080 0.920 32 H 0.125 0.875 33 H 0.354 0.646 34 H 0.271 0.729 35 H 0.118 0.882 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.575 -7.266 6.151 21.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.206 6.206 3 C 0.091 3.909 4 C -0.230 4.230 5 C -0.301 4.301 6 C -0.671 4.671 7 S 2.717 3.283 8 O -0.967 6.967 9 O -0.964 6.964 10 N -0.868 5.868 11 C 0.023 3.977 12 C 0.132 3.868 13 O -0.377 6.377 14 C -0.571 4.571 15 H 0.086 0.914 16 C -0.170 4.170 17 N -0.561 5.561 18 Si 0.728 3.272 19 H -0.187 1.187 20 H -0.156 1.156 21 H -0.211 1.211 22 C -0.035 4.035 23 S 0.470 5.530 24 N -0.383 5.383 25 H 0.076 0.924 26 H 0.151 0.849 27 H 0.080 0.920 28 H 0.209 0.791 29 H 0.210 0.790 30 H 0.199 0.801 31 H 0.098 0.902 32 H 0.143 0.857 33 H 0.206 0.794 34 H 0.081 0.919 35 H 0.136 0.864 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -21.731 -6.614 5.398 23.348 hybrid contribution 1.225 -0.162 0.003 1.236 sum -20.506 -6.776 5.401 22.261 Atomic orbital electron populations 1.23268 0.75076 1.05707 1.02491 1.86301 1.24640 1.21781 1.87920 1.20243 0.90261 0.85590 0.94853 1.20617 0.93333 0.99603 1.09399 1.24414 1.00639 0.98437 1.06567 1.29326 0.96718 1.14903 1.26158 1.04703 0.72149 0.73240 0.78211 1.93547 1.74921 1.54705 1.73516 1.93544 1.85555 1.43931 1.73420 1.60040 1.19680 1.17962 1.89115 1.23021 0.76981 0.95442 1.02273 1.20856 0.92128 0.95376 0.78396 1.86458 1.86578 1.41874 1.22780 1.21450 1.06675 1.07757 1.21217 0.91373 1.25693 0.94700 0.98679 0.97921 1.69980 1.17633 1.25407 1.43102 0.86593 0.81309 0.78913 0.80416 1.18737 1.15634 1.21104 1.24162 0.91093 0.85152 1.03057 1.84163 0.88708 1.11757 1.68328 1.76438 1.27149 1.01778 1.32918 0.92428 0.84881 0.91951 0.79126 0.79048 0.80069 0.90207 0.85729 0.79429 0.91948 0.86414 0.91126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.47 113.37 1.19 1.59 16 2 O -0.30 -6.19 10.54 -92.95 -0.98 -7.17 16 3 C 0.30 7.06 7.42 84.92 0.63 7.69 16 4 C -0.19 -4.11 10.15 21.54 0.22 -3.89 16 5 C -0.17 -3.63 5.85 24.95 0.15 -3.48 16 6 C -0.54 -9.77 6.75 71.24 0.48 -9.29 16 7 S 2.62 78.37 5.91 -56.49 -0.33 78.03 16 8 O -0.98 -35.06 18.02 -127.65 -2.30 -37.36 16 9 O -0.97 -34.62 18.02 -127.65 -2.30 -36.92 16 10 N -1.03 -33.35 4.00 -532.71 -2.13 -35.49 16 11 C 0.15 5.01 8.31 86.49 0.72 5.73 16 12 C 0.18 7.35 1.06 -10.88 -0.01 7.33 16 13 O -0.57 -25.61 13.35 -148.98 -1.99 -27.60 16 14 C -0.53 -25.95 9.19 25.60 0.24 -25.71 16 15 H 0.07 3.55 8.06 -2.91 -0.02 3.53 16 16 C 0.03 1.59 5.47 84.66 0.46 2.05 16 17 N -0.92 -51.04 13.96 21.45 0.30 -50.74 16 18 Si 0.90 37.81 24.31 68.60 1.67 39.47 16 19 H -0.26 -10.67 7.05 99.48 0.70 -9.97 16 20 H -0.23 -8.94 5.16 99.48 0.51 -8.43 16 21 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 22 C 0.09 3.23 7.40 86.44 0.64 3.87 16 23 S 0.32 7.14 23.71 -56.49 -1.34 5.80 16 24 N -0.54 -13.16 11.14 -176.09 -1.96 -15.12 16 25 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.13 0.99 8.14 -2.38 -0.02 0.97 16 27 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.19 3.28 8.06 -2.91 -0.02 3.25 16 29 H 0.19 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.18 2.27 8.14 -2.39 -0.02 2.26 16 31 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 32 H 0.12 3.43 8.09 -2.39 -0.02 3.41 16 33 H 0.35 15.26 3.57 -74.06 -0.26 14.99 16 34 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 35 H 0.12 3.57 8.09 -2.38 -0.02 3.55 16 36 H 0.07 2.57 6.83 -2.39 -0.02 2.56 16 Total: -1.00 -70.44 334.18 -5.99 -76.43 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: 0.67 Total: 24.79 kcal Atomic # 6 Polarization: -18.83 SS G_CDS: 4.71 Total: -14.12 kcal Atomic # 7 Polarization: -97.56 SS G_CDS: -3.79 Total: -101.35 kcal Atomic # 8 Polarization: -101.48 SS G_CDS: -7.57 Total: -109.05 kcal Atomic # 14 Polarization: 37.81 SS G_CDS: 1.67 Total: 39.47 kcal Atomic # 16 Polarization: 85.50 SS G_CDS: -1.67 Total: 83.83 kcal Total: -70.44 -5.99 -76.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001423974089.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.586 kcal (2) G-P(sol) polarization free energy of solvation -70.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds