Wall clock time and date at job start Tue Mar 31 2020 18:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 120.00209 * 2 1 4 4 H 1.48497 * 109.47347 * 270.00259 * 3 2 1 5 5 H 1.48501 * 109.46984 * 30.00312 * 3 2 1 6 6 H 1.48499 * 109.47273 * 150.00062 * 3 2 1 7 7 C 1.37875 * 120.00057 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00348 * 175.04006 * 7 2 1 9 9 C 1.50704 * 120.00149 * 355.31101 * 7 2 1 10 10 C 1.52998 * 115.54985 * 279.54055 * 9 7 2 11 11 S 1.81401 * 109.47183 * 299.38390 * 10 9 7 12 12 O 1.42094 * 110.54144 * 296.47430 * 11 10 9 13 13 O 1.42096 * 110.54054 * 73.22787 * 11 10 9 14 14 N 1.65603 * 104.44682 * 184.85015 * 11 10 9 15 15 C 1.46373 * 119.64325 * 101.82412 * 14 11 10 16 16 C 1.53245 * 109.48699 * 245.08226 * 15 14 11 17 17 S 1.81745 * 108.79707 * 302.34852 * 16 15 14 18 18 C 1.81735 * 102.30727 * 54.53658 * 17 16 15 19 19 C 1.46370 * 119.64799 * 281.54401 * 14 11 10 20 20 H 1.08994 * 109.47450 * 234.92202 * 19 14 11 21 21 C 1.50706 * 109.47004 * 354.91616 * 19 14 11 22 22 N 1.34775 * 119.99924 * 241.97365 * 21 19 14 23 23 O 1.21280 * 120.00250 * 61.96705 * 21 19 14 24 24 C 1.52999 * 117.50006 * 133.82554 * 9 7 2 25 25 C 1.52995 * 60.00077 * 252.51494 * 24 9 7 26 26 H 0.97002 * 120.00072 * 5.00545 * 1 2 3 27 27 H 1.08999 * 109.47273 * 59.38662 * 10 9 7 28 28 H 1.08999 * 109.47170 * 179.37973 * 10 9 7 29 29 H 1.09002 * 109.47468 * 5.08853 * 15 14 11 30 30 H 1.08997 * 109.47299 * 125.08235 * 15 14 11 31 31 H 1.09002 * 109.58279 * 62.13795 * 16 15 14 32 32 H 1.08998 * 109.58715 * 182.41394 * 16 15 14 33 33 H 1.09000 * 109.58453 * 65.25963 * 18 17 16 34 34 H 1.09004 * 109.58309 * 185.66785 * 18 17 16 35 35 H 0.97005 * 119.99962 * 359.97438 * 22 21 19 36 36 H 0.96998 * 120.00245 * 179.97438 * 22 21 19 37 37 H 1.09002 * 117.49814 * 0.02562 * 24 9 7 38 38 H 1.09002 * 117.49482 * 145.02470 * 24 9 7 39 39 H 1.09001 * 117.50249 * 252.50535 * 25 24 9 40 40 H 1.09000 * 117.49518 * 107.49318 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0814 -1.1958 -0.0814 9 6 1.2548 -2.4971 0.1056 10 6 0.8251 -2.8980 1.5182 11 16 2.2934 -3.0834 2.5671 12 8 3.1156 -4.1402 2.0916 13 8 2.8439 -1.8121 2.8833 14 7 1.7027 -3.6428 4.0096 15 6 1.8231 -5.0640 4.3388 16 6 0.4266 -5.6895 4.4220 17 16 -0.5446 -4.7905 5.6676 18 6 -0.4157 -3.0713 5.0926 19 6 1.0714 -2.7099 4.9442 20 1 1.5632 -2.7790 5.9144 21 6 1.1998 -1.3047 4.4149 22 7 1.8851 -0.3803 5.1166 23 8 0.6867 -1.0056 3.3575 24 6 1.6465 -3.6181 -0.8591 25 6 0.3241 -2.8726 -1.0493 26 1 -0.4850 0.8369 -0.0733 27 1 0.1768 -2.1264 1.9335 28 1 0.2848 -3.8438 1.4789 29 1 2.4017 -5.5685 3.5650 30 1 2.3276 -5.1731 5.2988 31 1 -0.0653 -5.6154 3.4520 32 1 0.5121 -6.7375 4.7090 33 1 -0.9165 -2.9696 4.1297 34 1 -0.8810 -2.4067 5.8206 35 1 2.2953 -0.6194 5.9625 36 1 1.9681 0.5240 4.7759 37 1 2.4468 -3.4133 -1.5703 38 1 1.5983 -4.6416 -0.4874 39 1 -0.5942 -3.4057 -0.8028 40 1 0.2541 -2.1773 -1.8858 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434565599.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:50 Heat of formation + Delta-G solvation = -57.976040 kcal Electronic energy + Delta-G solvation = -27346.646985 eV Core-core repulsion = 23609.635765 eV Total energy + Delta-G solvation = -3737.011220 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 334.085 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.80727 -37.00883 -36.63292 -35.96166 -35.08888 -33.40261 -31.91932 -31.86699 -29.40970 -28.02142 -25.30404 -24.80355 -22.75705 -21.12024 -20.92247 -19.38604 -18.63525 -17.61683 -17.06668 -16.49784 -16.38201 -16.05791 -15.64788 -15.07246 -14.65566 -14.54281 -14.45791 -14.25342 -13.92638 -13.63056 -13.51520 -13.26388 -13.05381 -12.63413 -11.88136 -11.83663 -11.72943 -11.52017 -11.25602 -11.22126 -10.91490 -10.83697 -10.81125 -10.46373 -10.39033 -10.14272 -9.98774 -9.67685 -9.39724 -9.24086 -9.19419 -8.88283 -8.37667 -7.95768 -7.80846 -5.95148 -4.05997 1.00911 1.58577 2.27959 2.67905 3.28381 3.37573 3.43378 3.53243 3.71294 4.40462 4.51238 4.56094 4.63034 4.82017 4.89485 4.90061 5.03181 5.20669 5.23737 5.29292 5.36889 5.41970 5.63934 5.67616 5.77067 5.92469 6.11394 6.37182 6.50092 6.57006 6.74388 6.80739 7.05416 7.18594 7.47168 7.50928 7.56871 7.95163 8.34626 8.62945 8.95239 9.65629 11.12482 Molecular weight = 334.09amu Principal moments of inertia in cm(-1) A = 0.015053 B = 0.006280 C = 0.005418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.614030 B = 4457.682505 C = 5166.787005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.096 3.904 3 Si 0.888 3.112 4 H -0.284 1.284 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.518 4.518 8 H 0.061 0.939 9 C 0.052 3.948 10 C -0.549 4.549 11 S 2.599 3.401 12 O -0.977 6.977 13 O -0.932 6.932 14 N -1.005 6.005 15 C 0.114 3.886 16 C -0.106 4.106 17 S -0.248 6.248 18 C -0.092 4.092 19 C 0.139 3.861 20 H 0.102 0.898 21 C 0.510 3.490 22 N -0.834 5.834 23 O -0.494 6.494 24 C -0.214 4.214 25 C -0.139 4.139 26 H 0.259 0.741 27 H 0.168 0.832 28 H 0.083 0.917 29 H 0.115 0.885 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.117 0.883 33 H 0.104 0.896 34 H 0.117 0.883 35 H 0.394 0.606 36 H 0.408 0.592 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.533 -7.602 13.892 15.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.110 4.110 3 Si 0.716 3.284 4 H -0.210 1.210 5 H -0.211 1.211 6 H -0.193 1.193 7 C -0.555 4.555 8 H 0.079 0.921 9 C 0.050 3.950 10 C -0.683 4.683 11 S 2.699 3.301 12 O -0.968 6.968 13 O -0.921 6.921 14 N -0.840 5.840 15 C -0.013 4.013 16 C -0.256 4.256 17 S -0.021 6.021 18 C -0.242 4.242 19 C 0.026 3.974 20 H 0.120 0.880 21 C 0.291 3.709 22 N -0.398 5.398 23 O -0.368 6.368 24 C -0.251 4.251 25 C -0.178 4.178 26 H 0.069 0.931 27 H 0.186 0.814 28 H 0.102 0.898 29 H 0.133 0.867 30 H 0.103 0.897 31 H 0.109 0.891 32 H 0.136 0.864 33 H 0.123 0.877 34 H 0.135 0.865 35 H 0.222 0.778 36 H 0.240 0.760 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.714 -7.744 14.042 16.052 hybrid contribution 0.484 1.467 -0.769 1.726 sum -0.230 -6.277 13.273 14.684 Atomic orbital electron populations 1.69964 1.05931 1.26659 1.47015 1.24780 0.94587 0.98676 0.92962 0.86644 0.80615 0.83473 0.77668 1.21020 1.21139 1.19300 1.20340 0.92635 0.88428 1.54108 0.92071 1.18229 0.99580 0.93362 0.83842 1.30274 1.17695 1.08365 1.11930 1.05579 0.77746 0.73500 0.73233 1.93447 1.65988 1.57290 1.80045 1.93504 1.76546 1.41355 1.80730 1.58074 1.76070 1.14332 1.35566 1.21536 0.95484 0.79979 1.04256 1.23957 0.98273 1.02253 1.01087 1.86665 1.70306 1.04715 1.40370 1.23884 0.97775 0.95658 1.06899 1.21012 0.93454 0.87613 0.95273 0.88035 1.20075 0.79223 0.86778 0.84862 1.43422 1.56347 1.14511 1.25478 1.90941 1.46482 1.80043 1.19329 1.23165 1.00068 0.95746 1.06166 1.22515 0.91096 1.01541 1.02689 0.93121 0.81435 0.89834 0.86696 0.89694 0.89128 0.86437 0.87722 0.86495 0.77844 0.76041 0.89765 0.91210 0.91839 0.89480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.62 12.87 55.43 0.71 -23.91 16 2 C 0.10 2.73 5.44 -17.82 -0.10 2.63 16 3 Si 0.89 22.40 29.54 -169.99 -5.02 17.37 16 4 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.52 -14.70 7.83 -34.44 -0.27 -14.97 16 8 H 0.06 1.78 7.82 -52.48 -0.41 1.37 16 9 C 0.05 1.33 1.39 -155.66 -0.22 1.11 16 10 C -0.55 -12.31 5.60 37.16 0.21 -12.11 16 11 S 2.60 54.27 4.46 -107.50 -0.48 53.79 16 12 O -0.98 -21.73 16.20 -57.54 -0.93 -22.66 16 13 O -0.93 -21.85 13.32 -66.95 -0.89 -22.74 16 14 N -1.00 -15.30 3.01 -108.15 -0.33 -15.63 16 15 C 0.11 1.39 6.26 -3.98 -0.02 1.36 16 16 C -0.11 -1.12 6.67 37.28 0.25 -0.87 16 17 S -0.25 -2.80 22.29 -107.50 -2.40 -5.20 16 18 C -0.09 -1.12 5.88 37.55 0.22 -0.90 16 19 C 0.14 1.85 3.18 -68.75 -0.22 1.63 16 20 H 0.10 1.03 7.92 -51.93 -0.41 0.62 16 21 C 0.51 8.39 4.31 -10.98 -0.05 8.34 16 22 N -0.83 -10.82 8.78 31.22 0.27 -10.55 16 23 O -0.49 -10.59 12.23 -18.10 -0.22 -10.81 16 24 C -0.21 -4.92 9.95 -26.73 -0.27 -5.18 16 25 C -0.14 -3.32 9.43 -26.73 -0.25 -3.58 16 26 H 0.26 7.13 8.32 -40.82 -0.34 6.79 16 27 H 0.17 4.06 5.23 -51.92 -0.27 3.79 16 28 H 0.08 1.62 8.11 -51.92 -0.42 1.20 16 29 H 0.12 1.47 6.48 -51.93 -0.34 1.13 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.10 1.47 8.03 -51.93 -0.42 1.05 16 34 H 0.12 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.39 3.44 8.67 -40.82 -0.35 3.09 16 36 H 0.41 5.47 8.93 -40.82 -0.36 5.10 16 37 H 0.08 1.91 8.14 -51.93 -0.42 1.48 16 38 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 39 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.09 2.19 8.14 -51.93 -0.42 1.77 16 LS Contribution 344.61 15.07 5.19 5.19 Total: -1.00 -35.40 344.61 -10.31 -45.70 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -5.50 Total: 11.97 kcal Atomic # 6 Polarization: -21.81 SS G_CDS: -0.72 Total: -22.53 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: 0.66 Total: -50.08 kcal Atomic # 8 Polarization: -54.17 SS G_CDS: -2.05 Total: -56.21 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Atomic # 16 Polarization: 51.47 SS G_CDS: -2.88 Total: 48.59 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.40 -10.31 -45.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434565599.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.273 kcal (2) G-P(sol) polarization free energy of solvation -35.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds