Wall clock time and date at job start Tue Mar 31 2020 18:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 120.00209 * 2 1 4 4 H 1.48497 * 109.47347 * 270.00259 * 3 2 1 5 5 H 1.48501 * 109.46984 * 30.00312 * 3 2 1 6 6 H 1.48499 * 109.47273 * 150.00062 * 3 2 1 7 7 C 1.37875 * 120.00057 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00348 * 175.04006 * 7 2 1 9 9 C 1.50704 * 120.00149 * 355.31101 * 7 2 1 10 10 C 1.52998 * 115.54985 * 279.54055 * 9 7 2 11 11 S 1.81401 * 109.47183 * 299.38390 * 10 9 7 12 12 O 1.42094 * 110.54144 * 296.47430 * 11 10 9 13 13 O 1.42096 * 110.54054 * 73.22787 * 11 10 9 14 14 N 1.65603 * 104.44682 * 184.85015 * 11 10 9 15 15 C 1.46373 * 119.64325 * 101.82412 * 14 11 10 16 16 C 1.53245 * 109.48699 * 245.08226 * 15 14 11 17 17 S 1.81745 * 108.79707 * 302.34852 * 16 15 14 18 18 C 1.81735 * 102.30727 * 54.53658 * 17 16 15 19 19 C 1.46370 * 119.64799 * 281.54401 * 14 11 10 20 20 H 1.08994 * 109.47450 * 234.92202 * 19 14 11 21 21 C 1.50706 * 109.47004 * 354.91616 * 19 14 11 22 22 N 1.34775 * 119.99924 * 241.97365 * 21 19 14 23 23 O 1.21280 * 120.00250 * 61.96705 * 21 19 14 24 24 C 1.52999 * 117.50006 * 133.82554 * 9 7 2 25 25 C 1.52995 * 60.00077 * 252.51494 * 24 9 7 26 26 H 0.97002 * 120.00072 * 5.00545 * 1 2 3 27 27 H 1.08999 * 109.47273 * 59.38662 * 10 9 7 28 28 H 1.08999 * 109.47170 * 179.37973 * 10 9 7 29 29 H 1.09002 * 109.47468 * 5.08853 * 15 14 11 30 30 H 1.08997 * 109.47299 * 125.08235 * 15 14 11 31 31 H 1.09002 * 109.58279 * 62.13795 * 16 15 14 32 32 H 1.08998 * 109.58715 * 182.41394 * 16 15 14 33 33 H 1.09000 * 109.58453 * 65.25963 * 18 17 16 34 34 H 1.09004 * 109.58309 * 185.66785 * 18 17 16 35 35 H 0.97005 * 119.99962 * 359.97438 * 22 21 19 36 36 H 0.96998 * 120.00245 * 179.97438 * 22 21 19 37 37 H 1.09002 * 117.49814 * 0.02562 * 24 9 7 38 38 H 1.09002 * 117.49482 * 145.02470 * 24 9 7 39 39 H 1.09001 * 117.50249 * 252.50535 * 25 24 9 40 40 H 1.09000 * 117.49518 * 107.49318 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0814 -1.1958 -0.0814 9 6 1.2548 -2.4971 0.1056 10 6 0.8251 -2.8980 1.5182 11 16 2.2934 -3.0834 2.5671 12 8 3.1156 -4.1402 2.0916 13 8 2.8439 -1.8121 2.8833 14 7 1.7027 -3.6428 4.0096 15 6 1.8231 -5.0640 4.3388 16 6 0.4266 -5.6895 4.4220 17 16 -0.5446 -4.7905 5.6676 18 6 -0.4157 -3.0713 5.0926 19 6 1.0714 -2.7099 4.9442 20 1 1.5632 -2.7790 5.9144 21 6 1.1998 -1.3047 4.4149 22 7 1.8851 -0.3803 5.1166 23 8 0.6867 -1.0056 3.3575 24 6 1.6465 -3.6181 -0.8591 25 6 0.3241 -2.8726 -1.0493 26 1 -0.4850 0.8369 -0.0733 27 1 0.1768 -2.1264 1.9335 28 1 0.2848 -3.8438 1.4789 29 1 2.4017 -5.5685 3.5650 30 1 2.3276 -5.1731 5.2988 31 1 -0.0653 -5.6154 3.4520 32 1 0.5121 -6.7375 4.7090 33 1 -0.9165 -2.9696 4.1297 34 1 -0.8810 -2.4067 5.8206 35 1 2.2953 -0.6194 5.9625 36 1 1.9681 0.5240 4.7759 37 1 2.4468 -3.4133 -1.5703 38 1 1.5983 -4.6416 -0.4874 39 1 -0.5942 -3.4057 -0.8028 40 1 0.2541 -2.1773 -1.8858 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434565599.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:49 Heat of formation + Delta-G solvation = -85.063703 kcal Electronic energy + Delta-G solvation = -27347.821594 eV Core-core repulsion = 23609.635765 eV Total energy + Delta-G solvation = -3738.185829 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 334.085 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.05084 -38.53199 -38.32014 -37.45681 -36.78046 -34.62006 -34.00067 -32.88741 -30.45273 -29.77057 -27.41731 -25.83730 -23.78927 -22.99251 -22.19012 -21.22588 -20.01952 -19.07648 -18.46539 -18.05698 -17.59464 -17.34988 -16.80998 -16.72047 -16.57188 -15.91569 -15.68828 -15.51949 -15.41178 -15.02207 -14.85783 -14.74007 -14.32778 -13.83036 -13.66251 -13.48710 -13.07102 -12.89894 -12.86748 -12.81051 -12.75445 -12.47952 -12.42792 -12.28611 -12.20903 -11.88260 -11.50164 -11.12837 -10.94588 -10.64901 -10.46529 -10.45697 -10.36896 -9.81106 -8.68865 -8.09357 -6.23873 -0.55692 0.69889 1.34120 1.37495 1.37877 1.45166 1.49019 1.97896 2.43347 2.55722 2.95436 3.20309 3.34720 3.40546 3.51471 3.59987 3.90944 3.97771 4.01008 4.07001 4.25431 4.34275 4.41082 4.49625 4.54729 4.67034 4.71339 4.77961 4.91552 4.91811 4.96768 5.23549 5.40596 5.54078 5.58225 5.77616 6.10163 6.27744 6.52690 6.78031 7.48389 7.49533 8.97506 Molecular weight = 334.09amu Principal moments of inertia in cm(-1) A = 0.015053 B = 0.006280 C = 0.005418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.614030 B = 4457.682505 C = 5166.787005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.059 3.941 3 Si 0.931 3.069 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.532 4.532 8 H 0.040 0.960 9 C 0.022 3.978 10 C -0.554 4.554 11 S 2.619 3.381 12 O -0.996 6.996 13 O -0.964 6.964 14 N -0.997 5.997 15 C 0.106 3.894 16 C -0.107 4.107 17 S -0.233 6.233 18 C -0.094 4.094 19 C 0.142 3.858 20 H 0.144 0.856 21 C 0.499 3.501 22 N -0.820 5.820 23 O -0.549 6.549 24 C -0.201 4.201 25 C -0.140 4.140 26 H 0.259 0.741 27 H 0.151 0.849 28 H 0.106 0.894 29 H 0.109 0.891 30 H 0.117 0.883 31 H 0.082 0.918 32 H 0.150 0.850 33 H 0.080 0.920 34 H 0.138 0.862 35 H 0.415 0.585 36 H 0.405 0.595 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.458 -9.083 16.129 18.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.145 4.145 3 Si 0.757 3.243 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.569 4.569 8 H 0.058 0.942 9 C 0.020 3.980 10 C -0.687 4.687 11 S 2.718 3.282 12 O -0.986 6.986 13 O -0.953 6.953 14 N -0.836 5.836 15 C -0.019 4.019 16 C -0.257 4.257 17 S -0.005 6.005 18 C -0.245 4.245 19 C 0.030 3.970 20 H 0.161 0.839 21 C 0.280 3.720 22 N -0.384 5.384 23 O -0.428 6.428 24 C -0.238 4.238 25 C -0.179 4.179 26 H 0.068 0.932 27 H 0.169 0.831 28 H 0.124 0.876 29 H 0.126 0.874 30 H 0.135 0.865 31 H 0.101 0.899 32 H 0.168 0.832 33 H 0.099 0.901 34 H 0.156 0.844 35 H 0.247 0.753 36 H 0.236 0.764 37 H 0.099 0.901 38 H 0.113 0.887 39 H 0.099 0.901 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.625 -9.229 16.298 18.740 hybrid contribution 0.472 1.878 -1.366 2.370 sum -0.153 -7.351 14.931 16.643 Atomic orbital electron populations 1.70030 1.06598 1.27017 1.47754 1.25305 0.95303 1.00932 0.92954 0.85982 0.79259 0.80965 0.78093 1.19809 1.20368 1.20230 1.20464 0.91882 0.90389 1.54198 0.94166 1.18350 1.00536 0.93249 0.85856 1.30203 1.18986 1.08825 1.10683 1.04608 0.76963 0.72668 0.73916 1.93416 1.66447 1.57565 1.81184 1.93456 1.77153 1.43200 1.81532 1.57635 1.76024 1.16124 1.33815 1.21877 0.96772 0.77703 1.05561 1.24045 0.97005 1.03852 1.00804 1.86661 1.70494 1.03442 1.39878 1.23856 0.96763 0.97362 1.06473 1.21253 0.94591 0.85223 0.95920 0.83856 1.20695 0.78621 0.88314 0.84358 1.43375 1.55035 1.13995 1.25964 1.90922 1.48807 1.81170 1.21894 1.23212 0.99207 0.96406 1.04961 1.22441 0.92230 1.01587 1.01669 0.93200 0.83136 0.87596 0.87351 0.86509 0.89949 0.83250 0.90114 0.84434 0.75329 0.76385 0.90059 0.88684 0.90133 0.91526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -51.39 12.87 21.45 0.28 -51.12 16 2 C 0.06 3.43 5.44 84.66 0.46 3.89 16 3 Si 0.93 46.70 29.54 68.60 2.03 48.73 16 4 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 5 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 6 H -0.28 -14.17 7.11 99.48 0.71 -13.46 16 7 C -0.53 -31.00 7.83 25.60 0.20 -30.80 16 8 H 0.04 2.43 7.82 -2.91 -0.02 2.41 16 9 C 0.02 1.15 1.39 -52.93 -0.07 1.07 16 10 C -0.55 -25.02 5.60 71.98 0.40 -24.62 16 11 S 2.62 108.20 4.46 -56.49 -0.25 107.95 16 12 O -1.00 -43.51 16.20 -127.65 -2.07 -45.58 16 13 O -0.96 -45.48 13.32 -118.65 -1.58 -47.06 16 14 N -1.00 -28.33 3.01 -496.09 -1.49 -29.82 16 15 C 0.11 2.23 6.26 86.49 0.54 2.78 16 16 C -0.11 -1.91 6.67 72.06 0.48 -1.43 16 17 S -0.23 -4.47 22.29 -56.49 -1.26 -5.73 16 18 C -0.09 -2.09 5.88 72.24 0.43 -1.67 16 19 C 0.14 3.44 3.18 44.53 0.14 3.58 16 20 H 0.14 2.30 7.92 -2.39 -0.02 2.28 16 21 C 0.50 16.00 4.31 87.66 0.38 16.38 16 22 N -0.82 -20.30 8.78 -173.53 -1.52 -21.83 16 23 O -0.55 -24.00 12.23 19.59 0.24 -23.76 16 24 C -0.20 -9.16 9.95 30.59 0.30 -8.85 16 25 C -0.14 -6.75 9.43 30.59 0.29 -6.46 16 26 H 0.26 14.54 8.32 -92.71 -0.77 13.77 16 27 H 0.15 7.49 5.23 -2.39 -0.01 7.48 16 28 H 0.11 4.07 8.11 -2.39 -0.02 4.05 16 29 H 0.11 2.49 6.48 -2.39 -0.02 2.47 16 30 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.08 1.63 8.14 -2.39 -0.02 1.62 16 32 H 0.15 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.08 2.22 8.03 -2.39 -0.02 2.20 16 34 H 0.14 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.42 6.27 8.67 -92.70 -0.80 5.47 16 36 H 0.41 10.70 8.93 -92.71 -0.83 9.87 16 37 H 0.08 3.69 8.14 -2.39 -0.02 3.67 16 38 H 0.09 3.80 8.14 -2.39 -0.02 3.78 16 39 H 0.08 3.53 8.14 -2.39 -0.02 3.51 16 40 H 0.07 3.43 8.14 -2.39 -0.02 3.41 16 Total: -1.00 -78.44 344.61 -2.63 -81.07 By element: Atomic # 1 Polarization: 33.82 SS G_CDS: -0.55 Total: 33.28 kcal Atomic # 6 Polarization: -49.68 SS G_CDS: 3.55 Total: -46.14 kcal Atomic # 7 Polarization: -100.02 SS G_CDS: -2.74 Total: -102.76 kcal Atomic # 8 Polarization: -112.99 SS G_CDS: -3.41 Total: -116.40 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Atomic # 16 Polarization: 103.73 SS G_CDS: -1.51 Total: 102.22 kcal Total: -78.44 -2.63 -81.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434565599.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.993 kcal (2) G-P(sol) polarization free energy of solvation -78.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds