Wall clock time and date at job start Tue Mar 31 2020 19:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86807 * 119.99831 * 2 1 4 4 H 1.48496 * 109.46729 * 239.99787 * 3 2 1 5 5 H 1.48500 * 109.46900 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47218 * 119.99779 * 3 2 1 7 7 C 1.38805 * 119.99890 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99666 * 179.97438 * 7 2 1 9 9 S 1.76199 * 120.00032 * 0.28011 * 7 2 1 10 10 C 1.76197 * 99.99858 * 174.86143 * 9 7 2 11 11 C 1.39111 * 120.19127 * 7.46053 * 10 9 7 12 12 C 1.37914 * 120.05239 * 179.70092 * 11 10 9 13 13 C 1.38657 * 120.43507 * 0.59701 * 12 11 10 14 14 C 1.37810 * 120.38183 * 359.68263 * 13 12 11 15 15 C 1.39673 * 119.93849 * 0.02562 * 14 13 12 16 16 C 1.47427 * 120.21364 * 180.02562 * 15 14 13 17 17 O 1.21614 * 120.00102 * 213.89265 * 16 15 14 18 18 N 1.34778 * 120.00174 * 33.89707 * 16 15 14 19 19 C 1.47288 * 135.92013 * 354.58122 * 18 16 15 20 20 C 1.52585 * 87.57269 * 153.94000 * 19 18 16 21 21 C 1.47287 * 135.92532 * 174.94997 * 18 16 15 22 22 C 1.53009 * 116.58389 * 268.76954 * 20 19 18 23 23 N 1.47443 * 103.21152 * 228.59624 * 22 20 19 24 24 C 1.34198 * 108.82886 * 0.02562 * 23 22 20 25 25 O 1.21509 * 123.09842 * 180.02562 * 24 23 22 26 26 O 1.34215 * 113.80092 * 359.97438 * 24 23 22 27 27 H 0.97002 * 119.99438 * 0.02562 * 1 2 3 28 28 H 1.08003 * 119.97172 * 0.02562 * 11 10 9 29 29 H 1.07998 * 119.78587 * 180.30205 * 12 11 10 30 30 H 1.08002 * 119.81001 * 179.69859 * 13 12 11 31 31 H 1.08002 * 120.03142 * 179.97438 * 14 13 12 32 32 H 1.08998 * 113.51844 * 268.59559 * 19 18 16 33 33 H 1.09001 * 113.51983 * 39.19095 * 19 18 16 34 34 H 1.08998 * 113.51998 * 320.81296 * 21 18 16 35 35 H 1.09000 * 113.51404 * 91.41111 * 21 18 16 36 36 H 1.08998 * 110.67157 * 347.02260 * 22 20 19 37 37 H 1.08997 * 110.67278 * 110.16511 * 22 20 19 38 38 H 0.96998 * 125.58391 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2845 2.7465 -0.0006 6 1 3.1033 1.6966 1.2125 7 6 2.0096 -1.2021 0.0005 8 1 3.0897 -1.2021 0.0001 9 16 1.1286 -2.7280 -0.0062 10 6 2.4730 -3.8568 -0.1582 11 6 3.7839 -3.3985 -0.0765 12 6 4.8339 -4.2854 -0.1897 13 6 4.5940 -5.6351 -0.3976 14 6 3.3026 -6.1078 -0.4871 15 6 2.2272 -5.2244 -0.3687 16 6 0.8432 -5.7235 -0.4629 17 8 -0.0207 -5.0296 -0.9642 18 7 0.5352 -6.9488 0.0065 19 6 1.2843 -8.0855 0.5687 20 6 0.0071 -8.4794 1.3047 21 6 -0.6965 -7.7385 0.1753 22 6 -0.1773 -7.9058 2.7112 23 7 -0.5459 -9.0879 3.5116 24 6 -0.5709 -10.1635 2.7095 25 8 -0.8460 -11.2793 3.1041 26 8 -0.2650 -9.8929 1.4310 27 1 -0.4849 0.8401 -0.0004 28 1 3.9794 -2.3480 0.0810 29 1 5.8499 -3.9256 -0.1207 30 1 5.4239 -6.3201 -0.4896 31 1 3.1222 -7.1602 -0.6495 32 1 1.5970 -8.8134 -0.1800 33 1 2.0958 -7.7863 1.2321 34 1 -1.5499 -7.1476 0.5080 35 1 -0.9285 -8.3710 -0.6816 36 1 0.7536 -7.4704 3.0743 37 1 -0.9792 -7.1676 2.7236 38 1 -0.7380 -9.0883 4.4624 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001451854061.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:08 Heat of formation + Delta-G solvation = -20.104173 kcal Electronic energy + Delta-G solvation = -25711.335448 eV Core-core repulsion = 21840.522525 eV Total energy + Delta-G solvation = -3870.812923 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.34201 -40.07591 -38.48177 -37.39059 -36.55352 -35.03501 -32.85300 -31.30362 -30.45179 -29.47014 -26.64054 -26.57426 -25.93942 -23.41909 -22.71131 -22.09089 -21.58056 -19.50418 -18.13560 -18.01478 -17.28614 -17.16018 -16.72940 -16.31479 -15.82380 -15.69577 -15.18162 -14.77799 -14.49873 -14.38418 -14.26245 -13.79998 -13.71852 -13.46806 -13.12894 -13.02952 -12.94203 -12.46338 -12.17052 -12.10542 -11.72519 -11.32847 -11.25066 -11.09031 -11.02480 -10.66684 -10.41166 -9.91624 -9.80329 -9.73213 -9.62395 -8.91074 -8.86054 -8.49650 -8.43104 -6.65085 -6.56132 -4.28144 1.41377 1.87983 2.19567 2.38498 2.71952 3.00318 3.04448 3.08221 3.12442 3.28501 3.29009 3.56569 3.61174 3.95369 4.23542 4.30817 4.67198 4.81245 4.85629 4.96149 5.02466 5.06214 5.08018 5.12855 5.23997 5.31052 5.44883 5.47390 5.58590 5.88944 5.99313 6.23658 6.41086 6.46406 6.73246 6.88682 6.89981 7.00577 7.33669 7.46806 7.63525 7.75922 8.05780 8.41838 8.89855 10.48182 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.017401 B = 0.003151 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.675444 B = 8882.610744 C = 9697.675963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.082 3.918 3 Si 0.922 3.078 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.579 4.579 8 H 0.094 0.906 9 S 0.134 5.866 10 C -0.047 4.047 11 C -0.153 4.153 12 C -0.074 4.074 13 C -0.183 4.183 14 C -0.064 4.064 15 C -0.168 4.168 16 C 0.599 3.401 17 O -0.496 6.496 18 N -0.644 5.644 19 C 0.109 3.891 20 C 0.047 3.953 21 C 0.114 3.886 22 C 0.096 3.904 23 N -0.735 5.735 24 C 0.646 3.354 25 O -0.523 6.523 26 O -0.303 6.303 27 H 0.276 0.724 28 H 0.140 0.860 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.798 -13.721 4.613 14.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.129 4.129 3 Si 0.747 3.253 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.725 4.725 8 H 0.111 0.889 9 S 0.397 5.603 10 C -0.167 4.167 11 C -0.179 4.179 12 C -0.096 4.096 13 C -0.208 4.208 14 C -0.084 4.084 15 C -0.183 4.183 16 C 0.391 3.609 17 O -0.369 6.369 18 N -0.385 5.385 19 C -0.015 4.015 20 C 0.007 3.993 21 C -0.009 4.009 22 C -0.028 4.028 23 N -0.408 5.408 24 C 0.398 3.602 25 O -0.408 6.408 26 O -0.212 6.212 27 H 0.086 0.914 28 H 0.158 0.842 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.121 0.879 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.119 0.881 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 1.604 -13.582 4.172 14.298 hybrid contribution 1.939 1.230 0.293 2.315 sum 3.543 -12.352 4.464 13.603 Atomic orbital electron populations 1.69962 1.06236 1.28662 1.44140 1.25112 0.95052 0.99706 0.93022 0.86143 0.79422 0.80353 0.79338 1.19391 1.20489 1.19423 1.23665 0.96504 0.92412 1.59953 0.88883 1.84189 1.03489 0.95032 1.77562 1.22933 1.00538 0.96578 0.96618 1.21428 0.91258 1.00949 1.04243 1.21117 0.98326 0.93372 0.96762 1.20669 0.95910 0.95666 1.08536 1.20980 0.92318 0.97675 0.97456 1.18920 0.91177 0.93143 1.15015 1.17901 0.88730 0.77768 0.76495 1.90890 1.49471 1.54566 1.41986 1.49293 1.09919 1.13329 1.65912 1.23214 0.94296 0.87502 0.96463 1.24068 1.00374 0.78298 0.96532 1.23011 0.90762 0.91359 0.95759 1.22437 1.04240 0.88849 0.87304 1.46091 1.74081 1.07812 1.12802 1.18633 0.76432 0.85175 0.79938 1.91086 1.53269 1.21665 1.74767 1.87248 1.81565 1.25732 1.26671 0.91377 0.84246 0.86843 0.86882 0.86867 0.87908 0.88370 0.88617 0.88137 0.87695 0.87670 0.71967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.84 13.22 55.49 0.73 -23.11 16 2 C 0.08 2.17 5.49 -17.46 -0.10 2.07 16 3 Si 0.92 19.87 29.55 -169.99 -5.02 14.85 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.58 -15.20 9.08 30.94 0.28 -14.92 16 8 H 0.09 2.30 4.84 -52.48 -0.25 2.04 16 9 S 0.13 3.39 19.16 -107.50 -2.06 1.33 16 10 C -0.05 -1.00 6.13 -38.39 -0.24 -1.24 16 11 C -0.15 -2.96 9.25 -39.38 -0.36 -3.32 16 12 C -0.07 -1.15 10.03 -39.55 -0.40 -1.55 16 13 C -0.18 -2.55 10.02 -39.58 -0.40 -2.94 16 14 C -0.06 -0.93 8.70 -39.20 -0.34 -1.27 16 15 C -0.17 -3.04 5.80 -104.75 -0.61 -3.64 16 16 C 0.60 10.64 7.47 -12.52 -0.09 10.55 16 17 O -0.50 -10.93 15.59 5.27 0.08 -10.85 16 18 N -0.64 -8.11 3.67 -186.56 -0.68 -8.80 16 19 C 0.11 0.95 5.93 -7.67 -0.05 0.91 16 20 C 0.05 0.41 1.92 -91.19 -0.17 0.23 16 21 C 0.11 1.14 8.20 -7.81 -0.06 1.08 16 22 C 0.10 0.69 7.58 -3.52 -0.03 0.66 16 23 N -0.74 -5.70 6.42 -64.89 -0.42 -6.11 16 24 C 0.65 7.43 9.17 53.80 0.49 7.92 16 25 O -0.52 -7.99 18.04 -19.09 -0.34 -8.34 16 26 O -0.30 -3.26 10.97 -38.97 -0.43 -3.68 16 27 H 0.28 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.14 2.81 4.97 -52.48 -0.26 2.55 16 29 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 30 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 31 H 0.11 1.27 6.25 -52.49 -0.33 0.94 16 32 H 0.10 0.75 8.13 -51.93 -0.42 0.33 16 33 H 0.10 0.76 7.45 -51.93 -0.39 0.37 16 34 H 0.10 0.94 7.94 -51.93 -0.41 0.53 16 35 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.10 0.64 7.87 -51.93 -0.41 0.23 16 37 H 0.11 0.70 7.84 -51.93 -0.41 0.29 16 38 H 0.44 2.43 8.96 -40.82 -0.37 2.06 16 LS Contribution 339.54 15.07 5.12 5.12 Total: -1.00 -33.92 339.54 -8.74 -42.66 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -3.65 Total: 2.40 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -2.07 Total: -5.46 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: -0.37 Total: -38.01 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.69 Total: -22.87 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Atomic # 16 Polarization: 3.39 SS G_CDS: -2.06 Total: 1.33 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.92 -8.74 -42.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001451854061.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.554 kcal (2) G-P(sol) polarization free energy of solvation -33.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds