Wall clock time and date at job start Tue Mar 31 2020 19:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86807 * 119.99831 * 2 1 4 4 H 1.48496 * 109.46729 * 239.99787 * 3 2 1 5 5 H 1.48500 * 109.46900 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47218 * 119.99779 * 3 2 1 7 7 C 1.38805 * 119.99890 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99666 * 179.97438 * 7 2 1 9 9 S 1.76199 * 120.00032 * 0.28011 * 7 2 1 10 10 C 1.76197 * 99.99858 * 174.86143 * 9 7 2 11 11 C 1.39111 * 120.19127 * 7.46053 * 10 9 7 12 12 C 1.37914 * 120.05239 * 179.70092 * 11 10 9 13 13 C 1.38657 * 120.43507 * 0.59701 * 12 11 10 14 14 C 1.37810 * 120.38183 * 359.68263 * 13 12 11 15 15 C 1.39673 * 119.93849 * 0.02562 * 14 13 12 16 16 C 1.47427 * 120.21364 * 180.02562 * 15 14 13 17 17 O 1.21614 * 120.00102 * 213.89265 * 16 15 14 18 18 N 1.34778 * 120.00174 * 33.89707 * 16 15 14 19 19 C 1.47288 * 135.92013 * 354.58122 * 18 16 15 20 20 C 1.52585 * 87.57269 * 153.94000 * 19 18 16 21 21 C 1.47287 * 135.92532 * 174.94997 * 18 16 15 22 22 C 1.53009 * 116.58389 * 268.76954 * 20 19 18 23 23 N 1.47443 * 103.21152 * 228.59624 * 22 20 19 24 24 C 1.34198 * 108.82886 * 0.02562 * 23 22 20 25 25 O 1.21509 * 123.09842 * 180.02562 * 24 23 22 26 26 O 1.34215 * 113.80092 * 359.97438 * 24 23 22 27 27 H 0.97002 * 119.99438 * 0.02562 * 1 2 3 28 28 H 1.08003 * 119.97172 * 0.02562 * 11 10 9 29 29 H 1.07998 * 119.78587 * 180.30205 * 12 11 10 30 30 H 1.08002 * 119.81001 * 179.69859 * 13 12 11 31 31 H 1.08002 * 120.03142 * 179.97438 * 14 13 12 32 32 H 1.08998 * 113.51844 * 268.59559 * 19 18 16 33 33 H 1.09001 * 113.51983 * 39.19095 * 19 18 16 34 34 H 1.08998 * 113.51998 * 320.81296 * 21 18 16 35 35 H 1.09000 * 113.51404 * 91.41111 * 21 18 16 36 36 H 1.08998 * 110.67157 * 347.02260 * 22 20 19 37 37 H 1.08997 * 110.67278 * 110.16511 * 22 20 19 38 38 H 0.96998 * 125.58391 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2845 2.7465 -0.0006 6 1 3.1033 1.6966 1.2125 7 6 2.0096 -1.2021 0.0005 8 1 3.0897 -1.2021 0.0001 9 16 1.1286 -2.7280 -0.0062 10 6 2.4730 -3.8568 -0.1582 11 6 3.7839 -3.3985 -0.0765 12 6 4.8339 -4.2854 -0.1897 13 6 4.5940 -5.6351 -0.3976 14 6 3.3026 -6.1078 -0.4871 15 6 2.2272 -5.2244 -0.3687 16 6 0.8432 -5.7235 -0.4629 17 8 -0.0207 -5.0296 -0.9642 18 7 0.5352 -6.9488 0.0065 19 6 1.2843 -8.0855 0.5687 20 6 0.0071 -8.4794 1.3047 21 6 -0.6965 -7.7385 0.1753 22 6 -0.1773 -7.9058 2.7112 23 7 -0.5459 -9.0879 3.5116 24 6 -0.5709 -10.1635 2.7095 25 8 -0.8460 -11.2793 3.1041 26 8 -0.2650 -9.8929 1.4310 27 1 -0.4849 0.8401 -0.0004 28 1 3.9794 -2.3480 0.0810 29 1 5.8499 -3.9256 -0.1207 30 1 5.4239 -6.3201 -0.4896 31 1 3.1222 -7.1602 -0.6495 32 1 1.5970 -8.8134 -0.1800 33 1 2.0958 -7.7863 1.2321 34 1 -1.5499 -7.1476 0.5080 35 1 -0.9285 -8.3710 -0.6816 36 1 0.7536 -7.4704 3.0743 37 1 -0.9792 -7.1676 2.7236 38 1 -0.7380 -9.0883 4.4624 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001451854061.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:08 Heat of formation + Delta-G solvation = -46.252612 kcal Electronic energy + Delta-G solvation = -25712.469330 eV Core-core repulsion = 21840.522525 eV Total energy + Delta-G solvation = -3871.946805 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.17656 -41.19066 -39.66713 -38.68340 -37.62014 -35.78985 -34.77016 -32.62256 -31.82155 -30.50854 -27.86936 -27.47995 -27.37564 -24.56912 -23.65153 -23.41670 -22.53043 -20.78373 -19.62550 -18.90434 -18.45235 -18.08784 -17.73615 -17.50413 -17.13896 -16.84506 -16.78352 -15.96851 -15.68869 -15.46362 -15.17651 -14.92011 -14.75802 -14.69008 -14.59755 -14.34186 -13.78457 -13.65079 -13.34874 -13.16707 -12.99865 -12.95439 -12.88963 -12.58349 -12.06581 -12.01650 -11.54822 -11.46689 -11.36950 -11.22406 -10.47918 -10.44684 -10.22680 -9.93260 -9.75453 -8.48665 -8.43752 -6.24594 0.07176 0.53785 1.26764 1.27465 1.39500 1.45283 1.50289 1.62241 1.81449 1.87667 2.20601 2.42098 2.79178 2.85285 2.90221 2.99559 3.20334 3.37504 3.73477 4.01663 4.05354 4.26667 4.31971 4.35806 4.40482 4.47096 4.48405 4.55388 4.62429 4.72572 4.74683 4.87213 5.13320 5.37272 5.48363 5.57970 5.69199 5.74670 6.08839 6.09513 6.16714 6.49314 6.95351 6.96319 7.12522 8.59809 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.017401 B = 0.003151 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.675444 B = 8882.610744 C = 9697.675963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.024 3.976 3 Si 0.993 3.007 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.257 1.257 7 C -0.585 4.585 8 H 0.099 0.901 9 S 0.023 5.977 10 C -0.064 4.064 11 C -0.172 4.172 12 C -0.069 4.069 13 C -0.153 4.153 14 C -0.057 4.057 15 C -0.168 4.168 16 C 0.595 3.405 17 O -0.553 6.553 18 N -0.641 5.641 19 C 0.110 3.890 20 C 0.057 3.943 21 C 0.107 3.893 22 C 0.095 3.905 23 N -0.715 5.715 24 C 0.645 3.355 25 O -0.567 6.567 26 O -0.308 6.308 27 H 0.276 0.724 28 H 0.120 0.880 29 H 0.149 0.851 30 H 0.165 0.835 31 H 0.157 0.843 32 H 0.130 0.870 33 H 0.120 0.880 34 H 0.092 0.908 35 H 0.114 0.886 36 H 0.125 0.875 37 H 0.111 0.889 38 H 0.448 0.552 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.448 -16.178 4.901 18.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.182 4.182 3 Si 0.814 3.186 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.182 1.182 7 C -0.732 4.732 8 H 0.117 0.883 9 S 0.280 5.720 10 C -0.182 4.182 11 C -0.198 4.198 12 C -0.090 4.090 13 C -0.175 4.175 14 C -0.077 4.077 15 C -0.180 4.180 16 C 0.387 3.613 17 O -0.431 6.431 18 N -0.379 5.379 19 C -0.012 4.012 20 C 0.018 3.982 21 C -0.016 4.016 22 C -0.029 4.029 23 N -0.388 5.388 24 C 0.397 3.603 25 O -0.455 6.455 26 O -0.217 6.217 27 H 0.085 0.915 28 H 0.138 0.862 29 H 0.167 0.833 30 H 0.183 0.817 31 H 0.174 0.826 32 H 0.147 0.853 33 H 0.138 0.862 34 H 0.110 0.890 35 H 0.132 0.868 36 H 0.143 0.857 37 H 0.129 0.871 38 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges 5.339 -16.141 4.491 17.585 hybrid contribution 0.986 1.598 0.175 1.886 sum 6.325 -14.543 4.666 16.531 Atomic orbital electron populations 1.70119 1.07990 1.29263 1.46550 1.26133 0.95873 1.03397 0.92749 0.85074 0.78074 0.75676 0.79738 1.18776 1.20092 1.18172 1.23926 0.96763 0.92869 1.59600 0.88341 1.84323 1.07635 0.97281 1.82734 1.22799 0.99405 0.96834 0.99142 1.21446 0.91750 1.01036 1.05530 1.21534 0.98764 0.93727 0.94971 1.21328 0.97085 0.95457 1.03656 1.21460 0.91377 0.99129 0.95697 1.19251 0.92801 0.92463 1.13521 1.17886 0.88226 0.78862 0.76366 1.90873 1.50784 1.56612 1.44798 1.49047 1.12223 1.12705 1.63956 1.23551 0.94450 0.86009 0.97197 1.23924 1.00042 0.77483 0.96759 1.23240 0.90101 0.91176 0.97070 1.22608 1.05512 0.88422 0.86368 1.46016 1.72647 1.06976 1.13160 1.18715 0.76172 0.85173 0.80244 1.91057 1.55380 1.23539 1.75528 1.87220 1.81450 1.26530 1.26468 0.91515 0.86234 0.83315 0.81724 0.82571 0.85262 0.86242 0.89004 0.86810 0.85711 0.87118 0.70657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.59 13.22 21.65 0.29 -53.30 16 2 C 0.02 1.35 5.49 84.87 0.47 1.81 16 3 Si 0.99 42.20 29.55 68.60 2.03 44.23 16 4 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 5 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 6 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 7 C -0.58 -32.57 9.08 67.96 0.62 -31.95 16 8 H 0.10 5.12 4.84 -2.91 -0.01 5.11 16 9 S 0.02 1.25 19.16 -56.49 -1.08 0.16 16 10 C -0.06 -2.77 6.13 23.04 0.14 -2.63 16 11 C -0.17 -6.55 9.25 22.40 0.21 -6.34 16 12 C -0.07 -1.86 10.03 22.29 0.22 -1.63 16 13 C -0.15 -3.24 10.02 22.27 0.22 -3.01 16 14 C -0.06 -1.35 8.70 22.52 0.20 -1.15 16 15 C -0.17 -5.82 5.80 -19.95 -0.12 -5.93 16 16 C 0.59 21.02 7.47 86.66 0.65 21.67 16 17 O -0.55 -25.71 15.59 -4.07 -0.06 -25.77 16 18 N -0.64 -14.83 3.67 -863.90 -3.17 -18.00 16 19 C 0.11 1.43 5.93 83.60 0.50 1.93 16 20 C 0.06 0.83 1.92 -11.15 -0.02 0.81 16 21 C 0.11 1.96 8.20 83.51 0.69 2.64 16 22 C 0.09 1.11 7.58 86.20 0.65 1.77 16 23 N -0.72 -9.47 6.42 -590.48 -3.79 -13.27 16 24 C 0.64 13.67 9.17 129.88 1.19 14.86 16 25 O -0.57 -16.87 18.04 19.63 0.35 -16.51 16 26 O -0.31 -5.84 10.97 -51.51 -0.57 -6.41 16 27 H 0.28 15.16 8.31 -92.71 -0.77 14.39 16 28 H 0.12 4.96 4.97 -2.91 -0.01 4.94 16 29 H 0.15 2.97 8.06 -2.91 -0.02 2.94 16 30 H 0.17 2.04 8.06 -2.91 -0.02 2.01 16 31 H 0.16 2.39 6.25 -2.91 -0.02 2.37 16 32 H 0.13 1.14 8.13 -2.39 -0.02 1.12 16 33 H 0.12 1.14 7.45 -2.39 -0.02 1.12 16 34 H 0.09 1.79 7.94 -2.39 -0.02 1.77 16 35 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.12 1.08 7.87 -2.39 -0.02 1.06 16 37 H 0.11 1.28 7.84 -2.39 -0.02 1.26 16 38 H 0.45 4.04 8.96 -92.71 -0.83 3.21 16 Total: -1.00 -83.14 339.54 -0.08 -83.22 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 0.31 Total: 12.80 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: 5.61 Total: -7.15 kcal Atomic # 7 Polarization: -77.90 SS G_CDS: -6.67 Total: -84.57 kcal Atomic # 8 Polarization: -48.41 SS G_CDS: -0.27 Total: -48.69 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -1.08 Total: 0.16 kcal Total: -83.14 -0.08 -83.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001451854061.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.967 kcal (2) G-P(sol) polarization free energy of solvation -83.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds