Wall clock time and date at job start Tue Mar 31 2020 18:58:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31550 * 1
3 3 Si 1.86806 * 120.00093 * 2 1
4 4 H 1.48507 * 109.47004 * 239.99810 * 3 2 1
5 5 H 1.48498 * 109.47118 * 359.97438 * 3 2 1
6 6 H 1.48495 * 109.47057 * 119.99956 * 3 2 1
7 7 C 1.38659 * 119.99982 * 179.97438 * 2 1 3
8 8 H 1.08000 * 119.99734 * 180.02562 * 7 2 1
9 9 O 1.34830 * 119.99992 * 0.02562 * 7 2 1
10 10 C 1.35747 * 116.99703 * 185.05449 * 9 7 2
11 11 C 1.38875 * 120.07489 * 354.46531 * 10 9 7
12 12 C 1.38094 * 119.93651 * 180.02562 * 11 10 9
13 13 C 1.38305 * 120.06758 * 0.02562 * 12 11 10
14 14 C 1.50698 * 119.93122 * 179.97438 * 13 12 11
15 15 N 1.46504 * 109.46992 * 90.00179 * 14 13 12
16 16 C 1.35846 * 119.62771 * 90.00048 * 15 14 13
17 17 C 1.35278 * 120.74096 * 180.02562 * 16 15 14
18 18 N 1.48009 * 120.01104 * 179.97438 * 17 16 15
19 19 O 1.21804 * 119.99920 * 0.02562 * 18 17 16
20 20 O 1.21799 * 119.99972 * 179.97438 * 18 17 16
21 21 C 1.40253 * 119.98038 * 359.97438 * 17 16 15
22 22 C 1.36467 * 119.25666 * 359.97438 * 21 17 16
23 23 F 1.35106 * 120.36208 * 180.02562 * 22 21 17
24 24 C 1.34664 * 119.62124 * 269.72515 * 15 14 13
25 25 O 1.22076 * 120.00473 * 359.97438 * 24 15 14
26 26 C 1.38299 * 120.13761 * 0.25004 * 13 12 11
27 27 C 1.38104 * 120.06808 * 359.45662 * 26 13 12
28 28 H 0.97003 * 120.00129 * 0.02562 * 1 2 3
29 29 H 1.08008 * 120.03256 * 0.02562 * 11 10 9
30 30 H 1.07995 * 119.96949 * 180.02562 * 12 11 10
31 31 H 1.09000 * 109.47043 * 209.99820 * 14 13 12
32 32 H 1.08994 * 109.47610 * 329.99870 * 14 13 12
33 33 H 1.08001 * 119.62862 * 359.97438 * 16 15 14
34 34 H 1.08000 * 120.37104 * 179.97438 * 21 17 16
35 35 H 1.07995 * 119.96585 * 179.70541 * 26 13 12
36 36 H 1.08003 * 120.03457 * 180.27214 * 27 26 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3155 0.0000 0.0000
3 14 2.2496 1.6178 0.0000
4 1 3.1034 1.6964 -1.2125
5 1 1.2846 2.7465 -0.0006
6 1 3.1033 1.6964 1.2125
7 6 2.0088 -1.2008 0.0005
8 1 3.0888 -1.2008 0.0010
9 8 1.3346 -2.3685 0.0005
10 6 2.0699 -3.5045 0.1076
11 6 3.4571 -3.4395 0.0952
12 6 4.2023 -4.5971 0.2038
13 6 3.5685 -5.8204 0.3244
14 6 4.3847 -7.0817 0.4421
15 7 4.6553 -7.3581 1.8552
16 6 3.7867 -8.1211 2.5685
17 6 4.0141 -8.3900 3.8746
18 7 3.0567 -9.2226 4.6367
19 8 2.0640 -9.6662 4.0876
20 8 3.2619 -9.4650 5.8125
21 6 5.1575 -7.8796 4.5065
22 6 6.0303 -7.1141 3.7892
23 9 7.1390 -6.6114 4.3753
24 6 5.7651 -6.8576 2.4306
25 8 6.5392 -6.1783 1.7753
26 6 2.1872 -5.8891 0.3314
27 6 1.4364 -4.7345 0.2292
28 1 -0.4850 0.8401 -0.0004
29 1 3.9526 -2.4845 0.0006
30 1 5.2810 -4.5471 0.1946
31 1 3.8310 -7.9146 0.0085
32 1 5.3273 -6.9557 -0.0904
33 1 2.9042 -8.5167 2.0877
34 1 5.3451 -8.0900 5.5491
35 1 1.6952 -6.8463 0.4209
36 1 0.3578 -4.7884 0.2392
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001459139702.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:58:45
Heat of formation + Delta-G solvation = -39.193672 kcal
Electronic energy + Delta-G solvation = -27540.196854 eV
Core-core repulsion = 23102.342972 eV
Total energy + Delta-G solvation = -4437.853882 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 334.084 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-49.34333 -42.64569 -41.76098 -39.27604 -37.79434 -37.08573 -36.79716 -35.00027
-32.55184 -31.17057 -30.67176 -30.41581 -27.11731 -26.46753 -25.45769 -24.29966
-23.17181 -22.21295 -21.03998 -19.88874 -19.50469 -18.27435 -18.18888 -17.87990
-17.67626 -17.31949 -17.12358 -16.81924 -16.06603 -15.61634 -15.21239 -14.86649
-14.70186 -14.45070 -13.89573 -13.75940 -13.56205 -13.43497 -13.17540 -12.92970
-12.83546 -12.29103 -11.84247 -11.80516 -11.64369 -11.51577 -11.50283 -11.37013
-11.06358 -10.91705 -10.69574 -10.58941 -10.54458 -9.58053 -9.04616 -8.82034
-8.48002 -7.54882 -6.66344 -4.24892 -0.36917 0.03412 0.80591 1.23105
1.61772 1.96110 2.23555 2.66171 3.02228 3.03583 3.06468 3.24335
3.62921 3.80353 3.83871 4.12104 4.31722 4.44928 4.71585 4.79777
4.81406 4.88611 5.00357 5.12568 5.30558 5.45849 5.48568 5.51761
5.92995 5.97921 6.06754 6.16805 6.37880 6.61763 6.77796 6.90510
7.08256 7.10858 7.19812 7.38405 7.51604 7.77767 8.78289 9.42862
10.50233
Molecular weight = 334.08amu
Principal moments of inertia in cm(-1)
A = 0.014093 B = 0.002944 C = 0.002770
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1986.313519 B = 9509.724819 C =10107.214815
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.854 5.854
2 C 0.043 3.957
3 Si 0.943 3.057
4 H -0.268 1.268
5 H -0.275 1.275
6 H -0.268 1.268
7 C -0.396 4.396
8 H 0.095 0.905
9 O -0.165 6.165
10 C 0.165 3.835
11 C -0.239 4.239
12 C -0.036 4.036
13 C -0.242 4.242
14 C 0.146 3.854
15 N -0.464 5.464
16 C 0.245 3.755
17 C -0.144 4.144
18 N 0.054 4.946
19 O -0.166 6.166
20 O -0.158 6.158
21 C -0.035 4.035
22 C 0.000 4.000
23 F -0.101 7.101
24 C 0.509 3.491
25 O -0.486 6.486
26 C -0.054 4.054
27 C -0.195 4.195
28 H 0.274 0.726
29 H 0.130 0.870
30 H 0.115 0.885
31 H 0.106 0.894
32 H 0.113 0.887
33 H 0.198 0.802
34 H 0.172 0.828
35 H 0.114 0.886
36 H 0.122 0.878
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.194 -16.512 3.818 18.824
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.487 5.487
2 C -0.163 4.163
3 Si 0.767 3.233
4 H -0.193 1.193
5 H -0.200 1.200
6 H -0.193 1.193
7 C -0.472 4.472
8 H 0.112 0.888
9 O -0.067 6.067
10 C 0.109 3.891
11 C -0.258 4.258
12 C -0.055 4.055
13 C -0.244 4.244
14 C 0.029 3.971
15 N -0.172 5.172
16 C 0.108 3.892
17 C -0.235 4.235
18 N 0.571 4.429
19 O -0.378 6.378
20 O -0.373 6.373
21 C -0.058 4.058
22 C -0.025 4.025
23 F -0.079 7.079
24 C 0.306 3.694
25 O -0.362 6.362
26 C -0.073 4.073
27 C -0.214 4.214
28 H 0.084 0.916
29 H 0.148 0.852
30 H 0.133 0.867
31 H 0.125 0.875
32 H 0.131 0.869
33 H 0.215 0.785
34 H 0.189 0.811
35 H 0.132 0.868
36 H 0.140 0.860
Dipole moment (debyes) X Y Z Total
from point charges 8.793 -15.345 2.922 17.925
hybrid contribution 0.376 0.785 0.451 0.981
sum 9.169 -14.560 3.374 17.534
Atomic orbital electron populations
1.70018 1.06081 1.28335 1.44245 1.25362 0.95900 0.99076 0.95973
0.85736 0.78787 0.79300 0.79447 1.19256 1.20022 1.19274 1.21375
0.91981 0.80585 1.53222 0.88767 1.83968 1.34703 1.11692 1.76294
1.19474 0.90324 0.88087 0.91224 1.21182 0.93729 0.99089 1.11790
1.20756 0.98977 0.91444 0.94336 1.19069 0.93412 0.93222 1.18688
1.21111 1.02551 0.97887 0.75593 1.46208 1.18322 1.38487 1.14154
1.21834 0.92814 0.84251 0.90342 1.19519 0.98076 1.12981 0.92936
1.42858 1.00262 0.98836 1.00898 1.94571 1.17429 1.53858 1.71979
1.94568 1.81085 1.62782 0.98825 1.20915 0.89862 0.92389 1.02592
1.17638 0.88974 1.04251 0.91591 1.91594 1.48494 1.85378 1.82462
1.17051 0.81972 0.82284 0.88129 1.91078 1.45122 1.36071 1.63959
1.20474 0.92345 0.97045 0.97419 1.20192 0.99800 0.90124 1.11296
0.91564 0.85224 0.86653 0.87544 0.86881 0.78483 0.81072 0.86818
0.86038
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.85 -23.94 13.67 55.48 0.76 -23.18 16
2 C 0.04 1.13 5.49 -17.52 -0.10 1.03 16
3 Si 0.94 19.69 29.55 -169.99 -5.02 14.67 16
4 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16
5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16
6 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16
7 C -0.40 -10.55 9.49 30.89 0.29 -10.26 16
8 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16
9 O -0.17 -4.45 9.76 0.06 0.00 -4.45 16
10 C 0.16 3.68 6.65 -39.11 -0.26 3.42 16
11 C -0.24 -4.85 9.17 -39.40 -0.36 -5.21 16
12 C -0.04 -0.62 9.69 -39.61 -0.38 -1.00 16
13 C -0.24 -3.37 5.46 -104.58 -0.57 -3.94 16
14 C 0.15 1.39 5.46 -5.19 -0.03 1.36 16
15 N -0.46 -4.57 2.57 -120.98 -0.31 -4.88 16
16 C 0.25 1.96 9.80 -16.83 -0.16 1.80 16
17 C -0.14 -1.35 6.82 -80.25 -0.55 -1.90 16
18 N 0.05 0.60 4.45 33.82 0.15 0.75 16
19 O -0.17 -1.89 18.39 -29.46 -0.54 -2.43 16
20 O -0.16 -1.89 18.50 -29.46 -0.54 -2.43 16
21 C -0.04 -0.33 9.57 -39.46 -0.38 -0.71 16
22 C 0.00 0.00 7.32 -39.26 -0.29 -0.29 16
23 F -0.10 -1.27 17.12 2.25 0.04 -1.23 16
24 C 0.51 6.36 7.41 -15.35 -0.11 6.25 16
25 O -0.49 -7.58 15.99 4.85 0.08 -7.50 16
26 C -0.05 -0.77 9.69 -39.61 -0.38 -1.15 16
27 C -0.19 -3.63 9.99 -39.39 -0.39 -4.02 16
28 H 0.27 7.05 8.31 -40.82 -0.34 6.72 16
29 H 0.13 2.70 5.64 -52.48 -0.30 2.40 16
30 H 0.12 1.87 7.54 -52.49 -0.40 1.47 16
31 H 0.11 0.60 7.95 -51.93 -0.41 0.19 16
32 H 0.11 1.10 7.32 -51.93 -0.38 0.72 16
33 H 0.20 0.98 7.51 -52.49 -0.39 0.59 16
34 H 0.17 1.30 7.67 -52.49 -0.40 0.90 16
35 H 0.11 1.16 8.06 -52.49 -0.42 0.74 16
36 H 0.12 2.19 8.06 -52.48 -0.42 1.76 16
LS Contribution 336.61 15.07 5.07 5.07
Total: -1.00 -31.43 336.61 -6.53 -37.96
By element:
Atomic # 1 Polarization: 4.81 SS G_CDS: -2.53 Total: 2.27 kcal
Atomic # 6 Polarization: -10.94 SS G_CDS: -3.68 Total: -14.62 kcal
Atomic # 7 Polarization: -27.91 SS G_CDS: 0.60 Total: -27.31 kcal
Atomic # 8 Polarization: -15.80 SS G_CDS: -1.01 Total: -16.81 kcal
Atomic # 9 Polarization: -1.27 SS G_CDS: 0.04 Total: -1.23 kcal
Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal
Total LS contribution 5.07 Total: 5.07 kcal
Total: -31.43 -6.53 -37.96 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001459139702.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -1.231 kcal
(2) G-P(sol) polarization free energy of solvation -31.429 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.660 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.534 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.963 kcal
(6) G-S(sol) free energy of system = (1) + (5) -39.194 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds