Wall clock time and date at job start Tue Mar 31 2020 18:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 119.99835 * 2 1 4 4 H 1.48502 * 109.46778 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47238 * 300.00034 * 3 2 1 6 6 H 1.48503 * 109.46910 * 60.00461 * 3 2 1 7 7 C 1.38811 * 120.00105 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00212 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99997 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00039 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46822 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47362 * 304.99115 * 11 10 9 13 13 O 1.42895 * 109.47283 * 64.99978 * 11 10 9 14 14 C 1.53006 * 109.46623 * 184.99666 * 11 10 9 15 15 N 1.46500 * 109.46998 * 179.97438 * 14 11 10 16 16 C 1.34769 * 120.00237 * 180.02562 * 15 14 11 17 17 O 1.21581 * 119.99808 * 359.97438 * 16 15 14 18 18 C 1.47630 * 120.00196 * 180.02562 * 16 15 14 19 19 C 1.39708 * 120.14407 * 359.97438 * 18 16 15 20 20 C 1.37996 * 119.86736 * 180.02562 * 19 18 16 21 21 F 1.35096 * 119.92251 * 180.02562 * 20 19 18 22 22 C 1.38805 * 120.15149 * 359.97438 * 20 19 18 23 23 Cl 1.73603 * 119.85366 * 179.97438 * 22 20 19 24 24 C 1.38324 * 120.29472 * 0.02562 * 22 20 19 25 25 C 1.38260 * 120.12721 * 359.71671 * 24 22 20 26 26 F 1.35106 * 120.07711 * 180.29684 * 25 24 22 27 27 H 0.97004 * 119.99993 * 359.97438 * 1 2 3 28 28 H 0.96995 * 119.99933 * 359.97438 * 9 7 2 29 29 H 1.08994 * 109.47386 * 59.99658 * 10 9 7 30 30 H 1.08998 * 109.46411 * 299.99980 * 10 9 7 31 31 H 0.96695 * 114.00385 * 60.00116 * 13 11 10 32 32 H 1.08993 * 109.46955 * 300.00075 * 14 11 10 33 33 H 1.09000 * 109.47050 * 59.99904 * 14 11 10 34 34 H 0.97010 * 119.99909 * 359.97438 * 15 14 11 35 35 H 1.07994 * 120.06599 * 359.97382 * 19 18 16 36 36 H 1.07997 * 119.93340 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 1 0.3794 -4.7131 0.8405 13 8 0.3220 -4.8115 -1.2225 14 6 1.8247 -6.1412 0.1245 15 7 0.8727 -7.2547 0.1245 16 6 1.3184 -8.5224 0.2266 17 8 2.5107 -8.7420 0.3183 18 6 0.3591 -9.6445 0.2261 19 6 -1.0116 -9.3957 0.1203 20 6 -1.9033 -10.4489 0.1209 21 9 -3.2289 -10.2095 0.0182 22 6 -1.4412 -11.7536 0.2257 23 17 -2.5699 -13.0726 0.2264 24 6 -0.0855 -12.0074 0.3308 25 6 0.8187 -10.9615 0.3260 26 9 2.1430 -11.2109 0.4227 27 1 -0.4850 0.8401 0.0004 28 1 0.3556 -2.3881 0.0002 29 1 2.6848 -3.7146 0.8893 30 1 2.6847 -3.7144 -0.8905 31 1 0.8682 -4.9028 -2.0151 32 1 2.5091 -6.2478 -0.7171 33 1 2.3906 -6.1475 1.0560 34 1 -0.0787 -7.0795 0.0517 35 1 -1.3726 -8.3811 0.0391 36 1 0.2675 -13.0247 0.4125 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482763552.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:16 Heat of formation + Delta-G solvation = -140.008739 kcal Electronic energy + Delta-G solvation = -25147.824941 eV Core-core repulsion = 20715.539329 eV Total energy + Delta-G solvation = -4432.285612 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.068 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -49.55476 -49.40633 -40.51178 -38.96545 -37.71475 -37.15842 -34.65165 -34.09927 -32.25254 -31.30071 -30.73547 -29.11374 -25.90304 -24.67322 -23.53839 -22.53620 -21.57019 -20.91502 -19.05691 -18.15362 -18.03040 -17.23763 -17.02806 -16.67748 -16.31596 -16.10661 -15.86310 -15.57638 -15.14124 -15.02841 -14.80566 -14.50840 -14.34682 -13.90575 -13.62894 -13.45949 -13.30770 -13.03541 -12.82547 -12.45807 -12.39037 -11.98869 -11.83390 -11.74607 -11.00842 -10.86657 -10.72577 -10.41172 -10.17936 -9.89081 -9.87067 -9.60532 -9.38613 -9.19317 -8.95363 -6.98855 -5.80548 -3.10500 -0.27264 0.18215 1.17434 2.05568 2.68146 2.95415 3.26263 3.40835 3.43697 3.46465 3.48769 3.73393 4.03076 4.24582 4.47677 4.60248 4.63057 4.73546 4.82794 4.93219 5.11330 5.14145 5.22391 5.50584 5.52802 5.66926 5.82469 5.85233 6.07368 6.18924 6.44550 6.59477 7.14359 7.65110 7.79877 7.86692 8.37429 9.49356 10.05008 10.40492 11.41798 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.023711 B = 0.002061 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.606002 B =13582.378117 C =14640.605807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.726 5.726 10 C 0.127 3.873 11 C 0.088 3.912 12 H 0.106 0.894 13 O -0.553 6.553 14 C 0.089 3.911 15 N -0.710 5.710 16 C 0.555 3.445 17 O -0.518 6.518 18 C -0.136 4.136 19 C -0.080 4.080 20 C 0.097 3.903 21 F -0.116 7.116 22 C -0.027 4.027 23 Cl -0.027 7.027 24 C -0.129 4.129 25 C 0.165 3.835 26 F -0.101 7.101 27 H 0.255 0.745 28 H 0.388 0.612 29 H 0.030 0.970 30 H 0.024 0.976 31 H 0.374 0.626 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.405 0.595 35 H 0.163 0.837 36 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.125 -28.244 0.115 28.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.371 5.371 10 C -0.001 4.001 11 C 0.028 3.972 12 H 0.124 0.876 13 O -0.358 6.358 14 C -0.035 4.035 15 N -0.363 5.363 16 C 0.340 3.660 17 O -0.395 6.395 18 C -0.141 4.141 19 C -0.099 4.099 20 C 0.076 3.924 21 F -0.094 7.094 22 C -0.055 4.055 23 Cl 0.002 6.998 24 C -0.149 4.149 25 C 0.144 3.856 26 F -0.078 7.078 27 H 0.065 0.935 28 H 0.223 0.777 29 H 0.047 0.953 30 H 0.042 0.958 31 H 0.221 0.779 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.242 0.758 35 H 0.180 0.820 36 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -3.717 -28.291 0.592 28.540 hybrid contribution 0.032 0.832 -0.364 0.909 sum -3.685 -27.459 0.227 27.706 Atomic orbital electron populations 1.69683 1.05121 1.25631 1.57333 1.24770 0.95550 0.97783 1.02772 0.86104 0.78769 0.83983 0.77226 1.20528 1.21795 1.21806 1.19258 0.91043 0.84048 1.43171 0.91116 1.42240 1.06066 0.99393 1.89390 1.21193 0.93452 0.86511 0.98981 1.22424 0.94698 0.91712 0.88352 0.87573 1.86574 1.37561 1.96230 1.15428 1.22210 0.92080 0.85500 1.03711 1.45803 1.11530 1.05214 1.73708 1.17731 0.87688 0.82619 0.77921 1.90887 1.15555 1.84405 1.48649 1.20050 0.93796 0.93411 1.06803 1.21234 0.90832 0.99937 0.97940 1.17122 0.79013 0.91516 1.04711 1.91610 1.29661 1.94854 1.93257 1.20890 0.91652 0.88683 1.04270 1.98434 1.59707 1.45227 1.96409 1.20887 0.89939 1.00748 1.03296 1.17382 0.78843 0.91463 0.97895 1.91666 1.29508 1.94515 1.92142 0.93484 0.77723 0.95280 0.95821 0.77852 0.90541 0.89904 0.75847 0.81973 0.81792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.96 13.06 55.49 0.72 -27.23 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.20 29.55 -169.99 -5.02 17.17 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 7 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -17.85 5.55 -59.91 -0.33 -18.19 16 10 C 0.13 2.34 5.90 -4.04 -0.02 2.32 16 11 C 0.09 1.24 3.09 -26.73 -0.08 1.15 16 12 H 0.11 1.54 8.14 -51.93 -0.42 1.12 16 13 O -0.55 -7.94 13.03 -35.23 -0.46 -8.40 16 14 C 0.09 1.05 5.34 -4.04 -0.02 1.02 16 15 N -0.71 -7.33 5.40 -61.32 -0.33 -7.66 16 16 C 0.56 6.50 7.77 -12.43 -0.10 6.41 16 17 O -0.52 -7.97 15.33 5.29 0.08 -7.89 16 18 C -0.14 -1.25 5.88 -104.92 -0.62 -1.87 16 19 C -0.08 -0.58 9.51 -39.12 -0.37 -0.95 16 20 C 0.10 0.74 7.26 -39.46 -0.29 0.45 16 21 F -0.12 -0.98 16.82 2.25 0.04 -0.94 16 22 C -0.03 -0.19 6.33 -39.34 -0.25 -0.44 16 23 Cl -0.03 -0.18 28.60 -51.86 -1.48 -1.67 16 24 C -0.13 -0.86 9.79 -39.54 -0.39 -1.25 16 25 C 0.17 1.49 7.28 -38.97 -0.28 1.21 16 26 F -0.10 -1.13 15.54 2.25 0.04 -1.09 16 27 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 28 H 0.39 10.22 7.67 -40.82 -0.31 9.91 16 29 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.37 4.41 9.05 45.56 0.41 4.82 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.41 3.43 6.38 -40.82 -0.26 3.17 16 35 H 0.16 0.87 6.40 -52.49 -0.34 0.54 16 36 H 0.16 0.73 8.06 -52.49 -0.42 0.30 16 LS Contribution 342.24 15.07 5.16 5.16 Total: -1.00 -33.30 342.24 -6.84 -40.13 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -2.58 Total: 9.89 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -2.67 Total: 0.72 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: 0.06 Total: -53.08 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -0.38 Total: -16.29 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.07 Total: -2.03 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -1.48 Total: -1.67 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.30 -6.84 -40.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482763552.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.874 kcal (2) G-P(sol) polarization free energy of solvation -33.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds