Wall clock time and date at job start Tue Mar 31 2020 18:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 119.99835 * 2 1 4 4 H 1.48502 * 109.46778 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47238 * 300.00034 * 3 2 1 6 6 H 1.48503 * 109.46910 * 60.00461 * 3 2 1 7 7 C 1.38811 * 120.00105 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00212 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99997 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00039 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46822 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47362 * 304.99115 * 11 10 9 13 13 O 1.42895 * 109.47283 * 64.99978 * 11 10 9 14 14 C 1.53006 * 109.46623 * 184.99666 * 11 10 9 15 15 N 1.46500 * 109.46998 * 179.97438 * 14 11 10 16 16 C 1.34769 * 120.00237 * 180.02562 * 15 14 11 17 17 O 1.21581 * 119.99808 * 359.97438 * 16 15 14 18 18 C 1.47630 * 120.00196 * 180.02562 * 16 15 14 19 19 C 1.39708 * 120.14407 * 359.97438 * 18 16 15 20 20 C 1.37996 * 119.86736 * 180.02562 * 19 18 16 21 21 F 1.35096 * 119.92251 * 180.02562 * 20 19 18 22 22 C 1.38805 * 120.15149 * 359.97438 * 20 19 18 23 23 Cl 1.73603 * 119.85366 * 179.97438 * 22 20 19 24 24 C 1.38324 * 120.29472 * 0.02562 * 22 20 19 25 25 C 1.38260 * 120.12721 * 359.71671 * 24 22 20 26 26 F 1.35106 * 120.07711 * 180.29684 * 25 24 22 27 27 H 0.97004 * 119.99993 * 359.97438 * 1 2 3 28 28 H 0.96995 * 119.99933 * 359.97438 * 9 7 2 29 29 H 1.08994 * 109.47386 * 59.99658 * 10 9 7 30 30 H 1.08998 * 109.46411 * 299.99980 * 10 9 7 31 31 H 0.96695 * 114.00385 * 60.00116 * 13 11 10 32 32 H 1.08993 * 109.46955 * 300.00075 * 14 11 10 33 33 H 1.09000 * 109.47050 * 59.99904 * 14 11 10 34 34 H 0.97010 * 119.99909 * 359.97438 * 15 14 11 35 35 H 1.07994 * 120.06599 * 359.97382 * 19 18 16 36 36 H 1.07997 * 119.93340 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 1 0.3794 -4.7131 0.8405 13 8 0.3220 -4.8115 -1.2225 14 6 1.8247 -6.1412 0.1245 15 7 0.8727 -7.2547 0.1245 16 6 1.3184 -8.5224 0.2266 17 8 2.5107 -8.7420 0.3183 18 6 0.3591 -9.6445 0.2261 19 6 -1.0116 -9.3957 0.1203 20 6 -1.9033 -10.4489 0.1209 21 9 -3.2289 -10.2095 0.0182 22 6 -1.4412 -11.7536 0.2257 23 17 -2.5699 -13.0726 0.2264 24 6 -0.0855 -12.0074 0.3308 25 6 0.8187 -10.9615 0.3260 26 9 2.1430 -11.2109 0.4227 27 1 -0.4850 0.8401 0.0004 28 1 0.3556 -2.3881 0.0002 29 1 2.6848 -3.7146 0.8893 30 1 2.6847 -3.7144 -0.8905 31 1 0.8682 -4.9028 -2.0151 32 1 2.5091 -6.2478 -0.7171 33 1 2.3906 -6.1475 1.0560 34 1 -0.0787 -7.0795 0.0517 35 1 -1.3726 -8.3811 0.0391 36 1 0.2675 -13.0247 0.4125 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482763552.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:15 Heat of formation + Delta-G solvation = -165.033008 kcal Electronic energy + Delta-G solvation = -25148.910075 eV Core-core repulsion = 20715.539329 eV Total energy + Delta-G solvation = -4433.370746 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.068 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.18764 -50.16042 -41.35662 -39.73414 -38.87506 -37.75926 -36.11941 -35.45838 -33.28116 -32.80418 -31.38748 -30.46584 -27.31192 -25.62380 -24.60237 -23.78853 -22.78323 -21.85978 -19.84916 -19.19806 -18.83350 -18.72645 -17.87954 -17.42633 -17.42190 -17.10703 -16.62266 -16.52046 -16.40051 -15.89158 -15.83160 -15.68048 -15.44054 -15.04713 -14.83774 -14.51957 -14.22184 -14.04984 -13.99190 -13.84895 -13.28623 -13.06042 -12.95886 -12.78622 -12.52052 -12.29741 -12.11683 -11.96218 -11.80969 -11.40411 -11.00712 -10.91024 -10.51295 -10.26333 -9.87670 -9.00629 -7.95115 -5.24214 -0.93258 -0.41097 0.60236 1.32428 1.48452 1.48780 1.58900 1.80762 2.18263 2.55781 2.65012 2.79641 3.13505 3.30991 3.37611 3.49561 3.57739 3.62526 4.00565 4.06204 4.15589 4.21630 4.32169 4.39706 4.56270 4.61378 4.62122 4.72745 4.95483 5.16113 5.20750 5.23636 5.49235 6.26302 6.29419 6.79791 6.96171 7.33817 8.09244 8.31774 9.28228 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.023711 B = 0.002061 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.606002 B =13582.378117 C =14640.605807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.076 4.076 3 Si 0.973 3.027 4 H -0.266 1.266 5 H -0.294 1.294 6 H -0.293 1.293 7 C -0.246 4.246 8 H 0.077 0.923 9 N -0.740 5.740 10 C 0.121 3.879 11 C 0.108 3.892 12 H 0.104 0.896 13 O -0.562 6.562 14 C 0.101 3.899 15 N -0.700 5.700 16 C 0.557 3.443 17 O -0.560 6.560 18 C -0.146 4.146 19 C -0.067 4.067 20 C 0.094 3.906 21 F -0.120 7.120 22 C -0.024 4.024 23 Cl -0.021 7.021 24 C -0.114 4.114 25 C 0.152 3.848 26 F -0.117 7.117 27 H 0.251 0.749 28 H 0.377 0.623 29 H 0.035 0.965 30 H 0.032 0.968 31 H 0.386 0.614 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.416 0.584 35 H 0.181 0.819 36 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.145 -29.314 -0.007 29.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.269 4.269 3 Si 0.802 3.198 4 H -0.190 1.190 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.378 4.378 8 H 0.095 0.905 9 N -0.383 5.383 10 C -0.006 4.006 11 C 0.048 3.952 12 H 0.121 0.879 13 O -0.369 6.369 14 C -0.024 4.024 15 N -0.352 5.352 16 C 0.343 3.657 17 O -0.440 6.440 18 C -0.150 4.150 19 C -0.087 4.087 20 C 0.073 3.927 21 F -0.098 7.098 22 C -0.052 4.052 23 Cl 0.009 6.991 24 C -0.133 4.133 25 C 0.131 3.869 26 F -0.095 7.095 27 H 0.060 0.940 28 H 0.209 0.791 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.235 0.765 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.254 0.746 35 H 0.198 0.802 36 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -3.726 -29.392 0.460 29.631 hybrid contribution 0.015 1.052 -0.341 1.106 sum -3.711 -28.340 0.119 28.582 Atomic orbital electron populations 1.69831 1.06605 1.26011 1.59355 1.25583 0.96410 1.01164 1.03699 0.85076 0.78239 0.79807 0.76637 1.19019 1.22076 1.22068 1.19672 0.91526 0.85329 1.41255 0.90547 1.42427 1.05769 1.00776 1.89354 1.21418 0.94256 0.85676 0.99247 1.22104 0.93596 0.91150 0.88378 0.87866 1.86554 1.38137 1.96200 1.15993 1.21953 0.91881 0.84681 1.03839 1.45662 1.11886 1.04597 1.73053 1.18021 0.87510 0.83193 0.76926 1.90866 1.17358 1.84994 1.50747 1.19851 0.93993 0.92642 1.08510 1.21297 0.89800 1.00811 0.96748 1.17189 0.78840 0.91806 1.04847 1.91606 1.29962 1.94906 1.93318 1.20967 0.91884 0.88761 1.03586 1.98443 1.59485 1.44887 1.96304 1.21015 0.89273 1.01248 1.01789 1.17604 0.78469 0.92052 0.98748 1.91625 1.30815 1.94626 1.92447 0.94003 0.79087 0.94760 0.95014 0.76485 0.90236 0.90028 0.74584 0.80181 0.79491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.81 13.06 21.65 0.28 -58.53 16 2 C -0.08 -4.33 5.50 84.86 0.47 -3.87 16 3 Si 0.97 45.64 29.55 68.60 2.03 47.67 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 6 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 7 C -0.25 -13.47 9.99 84.03 0.84 -12.63 16 8 H 0.08 4.01 7.83 -2.91 -0.02 3.98 16 9 N -0.74 -36.18 5.55 -343.45 -1.91 -38.09 16 10 C 0.12 4.34 5.90 86.38 0.51 4.85 16 11 C 0.11 2.89 3.09 30.60 0.09 2.98 16 12 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 13 O -0.56 -15.32 13.03 -148.98 -1.94 -17.26 16 14 C 0.10 2.23 5.34 86.38 0.46 2.70 16 15 N -0.70 -13.42 5.40 -466.18 -2.52 -15.94 16 16 C 0.56 12.55 7.77 86.72 0.67 13.23 16 17 O -0.56 -17.13 15.33 -3.97 -0.06 -17.19 16 18 C -0.15 -2.51 5.88 -20.05 -0.12 -2.62 16 19 C -0.07 -0.85 9.51 22.57 0.21 -0.63 16 20 C 0.09 1.24 7.26 22.35 0.16 1.41 16 21 F -0.12 -1.80 16.82 44.97 0.76 -1.04 16 22 C -0.02 -0.29 6.33 22.43 0.14 -0.15 16 23 Cl -0.02 -0.24 28.60 -2.72 -0.08 -0.32 16 24 C -0.11 -1.32 9.79 22.30 0.22 -1.10 16 25 C 0.15 2.60 7.28 22.66 0.17 2.76 16 26 F -0.12 -2.60 15.54 44.97 0.70 -1.91 16 27 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 28 H 0.38 19.94 7.67 -92.71 -0.71 19.23 16 29 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.39 8.46 9.05 -74.06 -0.67 7.79 16 32 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.42 6.22 6.38 -92.70 -0.59 5.63 16 35 H 0.18 1.51 6.40 -2.91 -0.02 1.49 16 36 H 0.19 1.22 8.06 -2.91 -0.02 1.19 16 Total: -1.00 -71.02 342.24 0.31 -70.72 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: -0.78 Total: 24.97 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 3.83 Total: 6.93 kcal Atomic # 7 Polarization: -108.42 SS G_CDS: -4.14 Total: -112.56 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -2.00 Total: -34.45 kcal Atomic # 9 Polarization: -4.40 SS G_CDS: 1.46 Total: -2.95 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -0.08 Total: -0.32 kcal Total: -71.02 0.31 -70.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482763552.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.318 kcal (2) G-P(sol) polarization free energy of solvation -71.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds