Wall clock time and date at job start Tue Mar 31 2020 19:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31640 * 1 3 3 Si 1.86803 * 119.99809 * 2 1 4 4 H 1.48502 * 109.46922 * 239.99814 * 3 2 1 5 5 H 1.48502 * 109.47026 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46689 * 120.00173 * 3 2 1 7 7 C 1.38790 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00298 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00255 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00291 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47333 * 179.97438 * 10 9 7 12 12 O 1.21292 * 119.99927 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00029 * 179.97438 * 11 10 9 14 14 C 1.39934 * 119.99856 * 174.82122 * 13 11 10 15 15 C 1.38942 * 120.03502 * 326.65380 * 14 13 11 16 16 C 1.38129 * 120.05642 * 179.79351 * 15 14 13 17 17 C 1.38194 * 120.13656 * 0.46580 * 16 15 14 18 18 C 1.38851 * 120.07710 * 359.78921 * 17 16 15 19 19 N 1.40197 * 120.03294 * 179.97438 * 18 17 16 20 20 C 1.33874 * 122.76166 * 111.96819 * 19 18 17 21 21 O 1.21223 * 125.39861 * 359.97438 * 20 19 18 22 22 C 1.51324 * 109.20508 * 179.84040 * 20 19 18 23 23 C 1.54229 * 103.55296 * 0.38894 * 22 20 19 24 24 C 1.33883 * 122.76203 * 292.25998 * 19 18 17 25 25 O 1.21225 * 125.39542 * 0.02562 * 24 19 18 26 26 C 1.38722 * 119.93611 * 359.97438 * 18 17 16 27 27 H 0.97006 * 119.99972 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.46857 * 299.99790 * 10 9 7 29 29 H 1.08999 * 109.47307 * 59.99716 * 10 9 7 30 30 H 0.96999 * 120.00075 * 354.81683 * 13 11 10 31 31 H 1.08001 * 119.96896 * 0.02562 * 15 14 13 32 32 H 1.07996 * 119.93110 * 180.23392 * 16 15 14 33 33 H 1.08003 * 119.95915 * 179.76959 * 17 16 15 34 34 H 1.08992 * 110.79506 * 241.77753 * 22 20 19 35 35 H 1.08998 * 110.54423 * 118.87877 * 22 20 19 36 36 H 1.09000 * 110.60464 * 241.25783 * 23 22 20 37 37 H 1.09000 * 110.73361 * 118.35468 * 23 22 20 38 38 H 1.08004 * 120.07214 * 179.97438 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0001 9 16 1.1294 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0021 11 6 1.9874 -5.3027 0.0030 12 8 0.7910 -5.5023 0.0021 13 7 2.8442 -6.3431 0.0037 14 6 2.3573 -7.6503 0.1139 15 6 1.2219 -7.9079 0.8722 16 6 0.7384 -9.1975 0.9778 17 6 1.3873 -10.2364 0.3379 18 6 2.5255 -9.9861 -0.4170 19 7 3.1834 -11.0408 -1.0653 20 6 3.2141 -11.1655 -2.3979 21 8 2.6930 -10.4065 -3.1864 22 6 4.0053 -12.4025 -2.7639 23 6 4.4224 -12.9824 -1.3970 24 6 3.8279 -12.0092 -0.4025 25 8 3.9202 -12.0933 0.8033 26 6 3.0109 -8.6914 -0.5292 27 1 -0.4850 0.8401 -0.0004 28 1 3.1252 -3.7318 -0.8875 29 1 3.1239 -3.7310 0.8925 30 1 3.7983 -6.1857 -0.0722 31 1 0.7148 -7.0986 1.3764 32 1 -0.1465 -9.3949 1.5646 33 1 1.0089 -11.2441 0.4255 34 1 4.8836 -12.1396 -3.3533 35 1 3.3788 -13.1107 -3.3061 36 1 5.5083 -13.0081 -1.3065 37 1 4.0031 -13.9786 -1.2564 38 1 3.8963 -8.4943 -1.1155 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001519039008.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:04 Heat of formation + Delta-G solvation = -58.985136 kcal Electronic energy + Delta-G solvation = -24735.632036 eV Core-core repulsion = 20863.133107 eV Total energy + Delta-G solvation = -3872.498929 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.56460 -40.30580 -38.97542 -38.33851 -36.27533 -34.85351 -33.61337 -32.47001 -30.73920 -29.88046 -28.32221 -26.68672 -25.53351 -23.79077 -23.14885 -22.40858 -21.19676 -19.61796 -18.40869 -18.00936 -17.50004 -16.82721 -16.72336 -16.37733 -16.29487 -15.50016 -15.20442 -14.83991 -14.76741 -14.64453 -14.39212 -14.15282 -14.00366 -13.86781 -13.43764 -13.37540 -13.05112 -12.63892 -12.29682 -12.03734 -11.93203 -11.85983 -11.11351 -11.08672 -11.06548 -10.81838 -10.71663 -10.41122 -10.28187 -9.88911 -9.57869 -9.09835 -8.99505 -8.32399 -8.21033 -6.56537 -6.25724 -3.97573 0.98723 1.06563 1.12938 2.02325 2.23723 2.82183 2.85940 3.21365 3.24131 3.27308 3.48119 3.54904 3.68623 3.74375 3.88463 4.15760 4.27915 4.65114 4.79591 4.87674 4.88501 4.94021 5.00677 5.05326 5.09587 5.10264 5.29566 5.38463 5.58228 5.75576 5.78780 5.99604 6.02580 6.16927 6.23893 6.36557 6.41258 6.84968 6.87167 7.37908 7.41998 7.55377 8.30521 8.32421 9.19485 10.81601 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.027506 B = 0.002133 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.728236 B =13123.964114 C =13461.585337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.920 3.080 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.073 0.927 9 S -0.055 6.055 10 C -0.154 4.154 11 C 0.533 3.467 12 O -0.493 6.493 13 N -0.680 5.680 14 C 0.173 3.827 15 C -0.109 4.109 16 C -0.086 4.086 17 C -0.121 4.121 18 C 0.121 3.879 19 N -0.528 5.528 20 C 0.522 3.478 21 O -0.464 6.464 22 C -0.154 4.154 23 C -0.154 4.154 24 C 0.524 3.476 25 O -0.470 6.470 26 C -0.133 4.133 27 H 0.270 0.730 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.411 0.589 31 H 0.146 0.854 32 H 0.136 0.864 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.005 -28.054 -2.704 30.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.686 4.686 8 H 0.091 0.909 9 S 0.171 5.829 10 C -0.305 4.305 11 C 0.320 3.680 12 O -0.365 6.365 13 N -0.327 5.327 14 C 0.077 3.923 15 C -0.129 4.129 16 C -0.106 4.106 17 C -0.141 4.141 18 C 0.033 3.967 19 N -0.269 5.269 20 C 0.311 3.689 21 O -0.333 6.333 22 C -0.194 4.194 23 C -0.194 4.194 24 C 0.314 3.686 25 O -0.339 6.339 26 C -0.155 4.155 27 H 0.080 0.920 28 H 0.112 0.888 29 H 0.114 0.886 30 H 0.247 0.753 31 H 0.163 0.837 32 H 0.154 0.846 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 8.607 -27.802 -2.477 29.209 hybrid contribution 2.475 1.398 -0.116 2.845 sum 11.082 -26.404 -2.593 28.753 Atomic orbital electron populations 1.70007 1.05956 1.27680 1.46565 1.24998 0.95052 0.99073 0.94425 0.86205 0.79230 0.81132 0.78828 1.19903 1.20773 1.19903 1.22810 0.94896 0.91509 1.59358 0.90866 1.85423 1.04378 0.96330 1.96769 1.23550 1.07060 0.94422 1.05420 1.20570 0.86487 0.86257 0.74656 1.90727 1.15150 1.85196 1.45392 1.43713 1.11080 1.03613 1.74293 1.17498 0.95492 0.83982 0.95339 1.21418 0.96169 0.97812 0.97519 1.20922 0.99488 0.91506 0.98652 1.20980 0.94312 0.99938 0.98880 1.17198 0.94280 0.86309 0.98948 1.44379 1.48828 1.24381 1.09296 1.21002 0.79724 0.87267 0.80954 1.90845 1.43331 1.46329 1.52807 1.22471 1.02528 0.95716 0.98641 1.22471 1.04599 1.00110 0.92173 1.20975 0.76974 0.81625 0.89064 1.90810 1.56169 1.73468 1.13496 1.20673 1.02284 0.91182 1.01360 0.92047 0.88769 0.88628 0.75346 0.83654 0.84623 0.85779 0.85830 0.85882 0.85884 0.85870 0.85462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.92 13.22 55.49 0.73 -25.18 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.21 29.55 -169.99 -5.02 16.19 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.54 -15.08 9.50 30.94 0.29 -14.79 16 8 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 9 S -0.06 -1.47 20.57 -107.50 -2.21 -3.68 16 10 C -0.15 -3.00 6.16 36.00 0.22 -2.77 16 11 C 0.53 9.74 7.59 -10.99 -0.08 9.66 16 12 O -0.49 -10.77 13.55 5.55 0.08 -10.69 16 13 N -0.68 -9.55 5.34 -9.88 -0.05 -9.60 16 14 C 0.17 2.47 6.28 -83.71 -0.53 1.95 16 15 C -0.11 -1.59 8.65 -39.36 -0.34 -1.93 16 16 C -0.09 -1.06 10.03 -39.64 -0.40 -1.46 16 17 C -0.12 -1.44 9.81 -39.37 -0.39 -1.83 16 18 C 0.12 1.50 4.92 -83.62 -0.41 1.09 16 19 N -0.53 -5.13 2.61 -59.43 -0.16 -5.28 16 20 C 0.52 4.61 7.96 -11.08 -0.09 4.52 16 21 O -0.46 -6.13 17.61 5.61 0.10 -6.03 16 22 C -0.15 -0.45 7.03 -26.93 -0.19 -0.64 16 23 C -0.15 -0.41 7.03 -26.94 -0.19 -0.60 16 24 C 0.52 4.30 7.96 -11.08 -0.09 4.21 16 25 O -0.47 -5.56 17.61 5.60 0.10 -5.46 16 26 C -0.13 -1.71 9.74 -39.22 -0.38 -2.09 16 27 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 29 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 30 H 0.41 4.31 8.82 -40.82 -0.36 3.95 16 31 H 0.15 2.34 6.41 -52.49 -0.34 2.01 16 32 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.12 1.25 8.06 -52.48 -0.42 0.82 16 34 H 0.12 0.14 8.14 -51.93 -0.42 -0.28 16 35 H 0.12 0.14 8.14 -51.93 -0.42 -0.29 16 36 H 0.12 0.10 8.14 -51.93 -0.42 -0.32 16 37 H 0.12 0.09 8.14 -51.93 -0.42 -0.34 16 38 H 0.13 1.43 8.06 -52.48 -0.42 1.00 16 LS Contribution 353.90 15.07 5.33 5.33 Total: -1.00 -38.14 353.90 -7.81 -45.96 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -4.05 Total: 1.15 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -2.66 Total: -2.69 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: 0.53 Total: -40.07 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: 0.27 Total: -22.18 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -1.47 SS G_CDS: -2.21 Total: -3.68 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -38.14 -7.81 -45.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519039008.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.029 kcal (2) G-P(sol) polarization free energy of solvation -38.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds