Wall clock time and date at job start Tue Mar 31 2020 19:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31640 * 1 3 3 Si 1.86803 * 119.99809 * 2 1 4 4 H 1.48502 * 109.46922 * 239.99814 * 3 2 1 5 5 H 1.48502 * 109.47026 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46689 * 120.00173 * 3 2 1 7 7 C 1.38790 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00298 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00255 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00291 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47333 * 179.97438 * 10 9 7 12 12 O 1.21292 * 119.99927 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00029 * 179.97438 * 11 10 9 14 14 C 1.39934 * 119.99856 * 174.82122 * 13 11 10 15 15 C 1.38942 * 120.03502 * 326.65380 * 14 13 11 16 16 C 1.38129 * 120.05642 * 179.79351 * 15 14 13 17 17 C 1.38194 * 120.13656 * 0.46580 * 16 15 14 18 18 C 1.38851 * 120.07710 * 359.78921 * 17 16 15 19 19 N 1.40197 * 120.03294 * 179.97438 * 18 17 16 20 20 C 1.33874 * 122.76166 * 111.96819 * 19 18 17 21 21 O 1.21223 * 125.39861 * 359.97438 * 20 19 18 22 22 C 1.51324 * 109.20508 * 179.84040 * 20 19 18 23 23 C 1.54229 * 103.55296 * 0.38894 * 22 20 19 24 24 C 1.33883 * 122.76203 * 292.25998 * 19 18 17 25 25 O 1.21225 * 125.39542 * 0.02562 * 24 19 18 26 26 C 1.38722 * 119.93611 * 359.97438 * 18 17 16 27 27 H 0.97006 * 119.99972 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.46857 * 299.99790 * 10 9 7 29 29 H 1.08999 * 109.47307 * 59.99716 * 10 9 7 30 30 H 0.96999 * 120.00075 * 354.81683 * 13 11 10 31 31 H 1.08001 * 119.96896 * 0.02562 * 15 14 13 32 32 H 1.07996 * 119.93110 * 180.23392 * 16 15 14 33 33 H 1.08003 * 119.95915 * 179.76959 * 17 16 15 34 34 H 1.08992 * 110.79506 * 241.77753 * 22 20 19 35 35 H 1.08998 * 110.54423 * 118.87877 * 22 20 19 36 36 H 1.09000 * 110.60464 * 241.25783 * 23 22 20 37 37 H 1.09000 * 110.73361 * 118.35468 * 23 22 20 38 38 H 1.08004 * 120.07214 * 179.97438 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0001 9 16 1.1294 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0021 11 6 1.9874 -5.3027 0.0030 12 8 0.7910 -5.5023 0.0021 13 7 2.8442 -6.3431 0.0037 14 6 2.3573 -7.6503 0.1139 15 6 1.2219 -7.9079 0.8722 16 6 0.7384 -9.1975 0.9778 17 6 1.3873 -10.2364 0.3379 18 6 2.5255 -9.9861 -0.4170 19 7 3.1834 -11.0408 -1.0653 20 6 3.2141 -11.1655 -2.3979 21 8 2.6930 -10.4065 -3.1864 22 6 4.0053 -12.4025 -2.7639 23 6 4.4224 -12.9824 -1.3970 24 6 3.8279 -12.0092 -0.4025 25 8 3.9202 -12.0933 0.8033 26 6 3.0109 -8.6914 -0.5292 27 1 -0.4850 0.8401 -0.0004 28 1 3.1252 -3.7318 -0.8875 29 1 3.1239 -3.7310 0.8925 30 1 3.7983 -6.1857 -0.0722 31 1 0.7148 -7.0986 1.3764 32 1 -0.1465 -9.3949 1.5646 33 1 1.0089 -11.2441 0.4255 34 1 4.8836 -12.1396 -3.3533 35 1 3.3788 -13.1107 -3.3061 36 1 5.5083 -13.0081 -1.3065 37 1 4.0031 -13.9786 -1.2564 38 1 3.8963 -8.4943 -1.1155 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001519039008.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:03 Heat of formation + Delta-G solvation = -86.135384 kcal Electronic energy + Delta-G solvation = -24736.809359 eV Core-core repulsion = 20863.133107 eV Total energy + Delta-G solvation = -3873.676252 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.24055 -41.56272 -39.72336 -39.49853 -37.06630 -36.02158 -34.60339 -34.28766 -32.03248 -30.84436 -29.58403 -27.68149 -27.15220 -24.73178 -24.03775 -23.12393 -22.34380 -20.60074 -19.96588 -19.21866 -18.37449 -17.94852 -17.51752 -17.45236 -17.34307 -16.89497 -16.70623 -16.17201 -15.89192 -15.73859 -15.34903 -15.06050 -14.96743 -14.81964 -14.54131 -14.47251 -14.15873 -13.78424 -13.60435 -13.21685 -13.10508 -12.88230 -12.85531 -12.65574 -12.09256 -11.87561 -11.79533 -11.65199 -11.36530 -11.15665 -11.14462 -10.99694 -10.33203 -9.99422 -9.34488 -8.70094 -8.36633 -6.15425 -0.04565 0.07756 0.44476 1.16413 1.35643 1.41678 1.43379 1.45154 1.53762 1.63175 2.06215 2.24773 2.52667 2.97772 3.21954 3.23979 3.30787 3.61910 3.64325 3.78639 3.91317 3.93754 4.07691 4.19066 4.21549 4.29370 4.37433 4.45346 4.78181 4.80934 4.91708 4.95176 5.01576 5.09952 5.20416 5.30924 5.40077 5.71652 5.76106 6.17628 6.22219 6.27121 6.70821 6.96505 7.04712 8.72249 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.027506 B = 0.002133 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.728236 B =13123.964114 C =13461.585337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.547 4.547 8 H 0.085 0.915 9 S -0.145 6.145 10 C -0.129 4.129 11 C 0.537 3.463 12 O -0.536 6.536 13 N -0.658 5.658 14 C 0.153 3.847 15 C -0.131 4.131 16 C -0.085 4.085 17 C -0.123 4.123 18 C 0.111 3.889 19 N -0.535 5.535 20 C 0.515 3.485 21 O -0.518 6.518 22 C -0.135 4.135 23 C -0.134 4.134 24 C 0.519 3.481 25 O -0.513 6.513 26 C -0.134 4.134 27 H 0.271 0.729 28 H 0.116 0.884 29 H 0.118 0.882 30 H 0.429 0.571 31 H 0.124 0.876 32 H 0.158 0.842 33 H 0.143 0.857 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.043 -30.351 -3.633 33.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.695 4.695 8 H 0.103 0.897 9 S 0.082 5.918 10 C -0.280 4.280 11 C 0.324 3.676 12 O -0.411 6.411 13 N -0.306 5.306 14 C 0.058 3.942 15 C -0.152 4.152 16 C -0.104 4.104 17 C -0.143 4.143 18 C 0.022 3.978 19 N -0.276 5.276 20 C 0.308 3.692 21 O -0.391 6.391 22 C -0.174 4.174 23 C -0.173 4.173 24 C 0.312 3.688 25 O -0.386 6.386 26 C -0.156 4.156 27 H 0.080 0.920 28 H 0.134 0.866 29 H 0.136 0.864 30 H 0.268 0.732 31 H 0.142 0.858 32 H 0.175 0.825 33 H 0.161 0.839 34 H 0.169 0.831 35 H 0.168 0.832 36 H 0.169 0.831 37 H 0.171 0.829 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 11.710 -30.160 -3.410 32.533 hybrid contribution 1.558 1.908 0.186 2.470 sum 13.269 -28.253 -3.223 31.379 Atomic orbital electron populations 1.70178 1.07968 1.28731 1.47853 1.26138 0.95979 1.03360 0.93695 0.84997 0.77794 0.75647 0.79522 1.18645 1.20453 1.18605 1.23171 0.95431 0.91842 1.59078 0.89694 1.85601 1.09944 0.99149 1.97096 1.23359 1.04048 0.93042 1.07508 1.20328 0.86187 0.86604 0.74457 1.90720 1.16988 1.85669 1.47736 1.43332 1.11494 1.02856 1.72923 1.17621 0.96109 0.84022 0.96437 1.21394 0.96849 0.98285 0.98657 1.21174 1.00028 0.90704 0.98508 1.21264 0.94115 1.00659 0.98232 1.17514 0.94449 0.87273 0.98577 1.44777 1.48780 1.23980 1.10039 1.22132 0.78944 0.88252 0.79908 1.90822 1.45821 1.48673 1.53797 1.22628 1.02788 0.92733 0.99279 1.22627 1.05934 0.99385 0.89355 1.22041 0.75888 0.81613 0.89303 1.90793 1.57735 1.74415 1.15658 1.20804 1.02556 0.91135 1.01101 0.91958 0.86584 0.86368 0.73207 0.85839 0.82451 0.83884 0.83113 0.83162 0.83059 0.82914 0.84077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.89 13.22 21.65 0.29 -55.61 16 2 C 0.01 0.75 5.49 84.85 0.47 1.21 16 3 Si 1.00 43.41 29.55 68.60 2.03 45.44 16 4 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 5 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 7 C -0.55 -30.97 9.50 67.95 0.65 -30.33 16 8 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 9 S -0.14 -7.97 20.57 -56.49 -1.16 -9.13 16 10 C -0.13 -4.99 6.16 71.23 0.44 -4.55 16 11 C 0.54 20.04 7.59 87.66 0.66 20.70 16 12 O -0.54 -24.61 13.55 -3.07 -0.04 -24.65 16 13 N -0.66 -18.49 5.34 -303.55 -1.62 -20.11 16 14 C 0.15 4.48 6.28 38.14 0.24 4.72 16 15 C -0.13 -4.03 8.65 22.41 0.19 -3.84 16 16 C -0.09 -2.13 10.03 22.23 0.22 -1.91 16 17 C -0.12 -2.89 9.81 22.41 0.22 -2.67 16 18 C 0.11 2.71 4.92 38.06 0.19 2.90 16 19 N -0.54 -9.56 2.61 -579.78 -1.51 -11.07 16 20 C 0.52 8.08 7.96 88.00 0.70 8.78 16 21 O -0.52 -13.40 17.61 -2.85 -0.05 -13.45 16 22 C -0.14 -0.18 7.03 30.46 0.21 0.03 16 23 C -0.13 -0.07 7.03 30.46 0.21 0.15 16 24 C 0.52 7.28 7.96 87.99 0.70 7.99 16 25 O -0.51 -11.50 17.61 -2.86 -0.05 -11.55 16 26 C -0.13 -3.43 9.74 22.50 0.22 -3.22 16 27 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 28 H 0.12 4.01 8.14 -2.39 -0.02 3.99 16 29 H 0.12 4.06 8.14 -2.40 -0.02 4.04 16 30 H 0.43 8.54 8.82 -92.71 -0.82 7.72 16 31 H 0.12 4.31 6.41 -2.91 -0.02 4.30 16 32 H 0.16 3.07 8.06 -2.91 -0.02 3.05 16 33 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 34 H 0.15 -0.47 8.14 -2.39 -0.02 -0.49 16 35 H 0.15 -0.47 8.14 -2.39 -0.02 -0.49 16 36 H 0.15 -0.62 8.14 -2.39 -0.02 -0.64 16 37 H 0.15 -0.67 8.14 -2.39 -0.02 -0.69 16 38 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -89.32 353.90 3.51 -85.81 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 0.30 Total: 14.36 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: 5.33 Total: -0.04 kcal Atomic # 7 Polarization: -83.94 SS G_CDS: -2.85 Total: -86.79 kcal Atomic # 8 Polarization: -49.51 SS G_CDS: -0.14 Total: -49.65 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: -7.97 SS G_CDS: -1.16 Total: -9.13 kcal Total: -89.32 3.51 -85.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519039008.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.324 kcal (2) G-P(sol) polarization free energy of solvation -89.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds