Wall clock time and date at job start Tue Mar 31 2020 17:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30639 * 1 3 3 Si 1.86799 * 120.00026 * 2 1 4 4 H 1.48508 * 109.47049 * 83.28631 * 3 2 1 5 5 H 1.48505 * 109.47194 * 203.28499 * 3 2 1 6 6 H 1.48501 * 109.47153 * 323.28665 * 3 2 1 7 7 C 1.40306 * 119.99927 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00008 * 15.61635 * 7 2 1 9 9 C 1.40542 * 119.99854 * 195.61953 * 7 2 1 10 10 C 1.44183 * 123.71473 * 24.41003 * 9 7 2 11 11 C 1.32771 * 114.42891 * 179.75838 * 10 9 7 12 12 S 1.75476 * 111.36239 * 0.50186 * 11 10 9 13 13 C 1.39551 * 123.71246 * 204.71292 * 9 7 2 14 14 C 1.46240 * 125.22721 * 359.97438 * 13 9 7 15 15 O 1.21758 * 119.99968 * 359.97438 * 14 13 9 16 16 N 1.34778 * 119.99894 * 180.02562 * 14 13 9 17 17 N 1.40098 * 119.99953 * 179.97438 * 16 14 13 18 18 C 1.34778 * 119.99953 * 179.97438 * 17 16 14 19 19 O 1.21573 * 119.99901 * 359.97438 * 18 17 16 20 20 C 1.47688 * 120.00256 * 179.97438 * 18 17 16 21 21 C 1.39666 * 120.16257 * 359.97438 * 20 18 17 22 22 C 1.37855 * 119.87598 * 179.97438 * 21 20 18 23 23 C 1.38462 * 120.21891 * 0.02562 * 22 21 20 24 24 C 1.38200 * 120.33940 * 359.97438 * 23 22 21 25 25 C 1.38322 * 120.12000 * 359.74130 * 24 23 22 26 26 F 1.35100 * 120.11697 * 180.27608 * 25 24 23 27 27 H 0.97004 * 119.99879 * 173.15793 * 1 2 3 28 28 H 1.07991 * 122.78729 * 0.02562 * 10 9 7 29 29 H 1.07995 * 124.32387 * 180.21140 * 11 10 9 30 30 H 0.97006 * 120.00004 * 359.97438 * 16 14 13 31 31 H 0.96996 * 120.00158 * 359.97438 * 17 16 14 32 32 H 1.07994 * 120.06260 * 359.95153 * 21 20 18 33 33 H 1.07999 * 119.89095 * 179.97438 * 22 21 20 34 34 H 1.07999 * 119.83190 * 179.97438 * 23 22 21 35 35 H 1.08002 * 119.94060 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.3461 2.1283 1.3905 5 1 3.6017 1.4034 -0.5535 6 1 1.5159 2.6076 -0.8370 7 6 2.0079 -1.2151 -0.0005 8 1 1.4978 -2.1330 -0.2527 9 6 3.3744 -1.2377 0.3272 10 6 4.0195 -0.2355 1.1386 11 6 5.3162 -0.4406 1.3367 12 16 5.8654 -1.8940 0.5210 13 6 4.2575 -2.2293 -0.1020 14 6 3.8993 -3.3723 -0.9410 15 8 2.7509 -3.5131 -1.3201 16 7 4.8403 -4.2704 -1.2938 17 7 4.4971 -5.3657 -2.0971 18 6 5.4382 -6.2636 -2.4503 19 8 6.5850 -6.1227 -2.0721 20 6 5.0763 -7.4185 -3.2966 21 6 3.7597 -7.5840 -3.7325 22 6 3.4286 -8.6639 -4.5227 23 6 4.3967 -9.5851 -4.8851 24 6 5.7021 -9.4302 -4.4589 25 6 6.0511 -8.3486 -3.6704 26 9 7.3285 -8.1942 -3.2584 27 1 -0.4850 -0.8341 -0.1001 28 1 3.4909 0.6094 1.5545 29 1 5.9529 0.2070 1.9211 30 1 5.7552 -4.1585 -0.9915 31 1 3.5822 -5.4779 -2.3991 32 1 3.0025 -6.8674 -3.4507 33 1 2.4105 -8.7923 -4.8596 34 1 4.1302 -10.4291 -5.5041 35 1 6.4522 -10.1524 -4.7458 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001521879176.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:31 Heat of formation + Delta-G solvation = -32.196172 kcal Electronic energy + Delta-G solvation = -24710.817391 eV Core-core repulsion = 20716.019814 eV Total energy + Delta-G solvation = -3994.797577 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 334.057 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.00172 -40.24424 -38.85095 -37.96490 -36.41973 -34.66647 -33.50374 -32.34385 -30.81824 -30.39475 -29.02810 -26.36758 -24.32628 -22.98759 -22.01965 -21.16031 -21.08082 -19.41120 -18.71904 -17.84546 -17.32376 -16.92505 -16.38573 -16.14402 -15.91497 -15.41700 -15.00178 -14.93082 -14.78284 -14.38852 -13.84306 -13.80670 -13.54571 -13.36083 -13.31486 -12.66498 -12.58167 -12.37866 -12.03028 -11.85634 -11.67611 -11.34149 -10.97619 -10.77514 -10.18798 -10.10184 -10.08141 -9.70843 -9.53523 -9.42338 -9.08732 -8.85490 -8.01289 -7.87477 -7.62700 -7.37836 -4.77526 0.39571 0.81494 1.76612 2.20667 2.62738 2.74883 2.90459 3.12840 3.26412 3.34800 3.39151 3.47101 3.74263 3.88118 4.13316 4.16819 4.33839 4.52026 4.72238 4.86139 4.96972 4.99847 5.31001 5.61706 5.65443 5.67691 5.77495 5.94328 5.95914 6.33305 6.42835 6.76105 6.89690 7.09780 7.12305 7.22498 7.31833 7.94157 8.12160 8.19287 8.31574 8.48974 9.24609 9.61844 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.019553 B = 0.002929 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.641669 B = 9558.534779 C =10817.195502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.034 3.966 3 Si 1.066 2.934 4 H -0.271 1.271 5 H -0.254 1.254 6 H -0.281 1.281 7 C -0.418 4.418 8 H 0.111 0.889 9 C 0.118 3.882 10 C -0.164 4.164 11 C -0.169 4.169 12 S -0.015 6.015 13 C -0.429 4.429 14 C 0.602 3.398 15 O -0.563 6.563 16 N -0.543 5.543 17 N -0.506 5.506 18 C 0.549 3.451 19 O -0.533 6.533 20 C -0.160 4.160 21 C -0.058 4.058 22 C -0.137 4.137 23 C -0.066 4.066 24 C -0.166 4.166 25 C 0.162 3.838 26 F -0.114 7.114 27 H 0.296 0.704 28 H 0.128 0.872 29 H 0.148 0.852 30 H 0.423 0.577 31 H 0.427 0.573 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.309 -12.021 -6.981 14.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.191 4.191 3 Si 0.890 3.110 4 H -0.198 1.198 5 H -0.178 1.178 6 H -0.208 1.208 7 C -0.448 4.448 8 H 0.128 0.872 9 C 0.106 3.894 10 C -0.198 4.198 11 C -0.304 4.304 12 S 0.242 5.758 13 C -0.549 4.549 14 C 0.400 3.600 15 O -0.444 6.444 16 N -0.294 5.294 17 N -0.251 5.251 18 C 0.334 3.666 19 O -0.410 6.410 20 C -0.165 4.165 21 C -0.077 4.077 22 C -0.155 4.155 23 C -0.084 4.084 24 C -0.184 4.184 25 C 0.141 3.859 26 F -0.092 7.092 27 H 0.108 0.892 28 H 0.145 0.855 29 H 0.166 0.834 30 H 0.265 0.735 31 H 0.270 0.730 32 H 0.157 0.843 33 H 0.156 0.844 34 H 0.156 0.844 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 6.416 -11.127 -6.993 14.624 hybrid contribution -1.060 -1.012 0.230 1.483 sum 5.356 -12.139 -6.763 14.892 Atomic orbital electron populations 1.70407 1.08178 1.34338 1.26753 1.27717 0.95791 1.04978 0.90572 0.83790 0.76429 0.72620 0.78150 1.19787 1.17814 1.20770 1.21093 0.93283 0.97589 1.32836 0.87166 1.17866 0.92986 0.88890 0.89612 1.21377 0.94655 1.01080 1.02644 1.24983 0.98664 1.01476 1.05234 1.83049 1.13307 1.23916 1.55520 1.22012 0.94700 1.10657 1.27581 1.16940 0.83517 0.80101 0.79422 1.90681 1.19302 1.76166 1.58299 1.45130 1.13802 1.18603 1.51859 1.44459 1.12858 1.18960 1.48814 1.17959 0.85081 0.82055 0.81457 1.90849 1.18826 1.75655 1.55658 1.19848 0.94795 0.97397 1.04496 1.21351 0.94088 0.97533 0.94708 1.21187 1.00502 0.94639 0.99170 1.21236 0.91772 0.98462 0.96918 1.21174 0.98446 0.98127 1.00695 1.17677 0.79009 0.94248 0.94996 1.91609 1.34651 1.95070 1.87826 0.89153 0.85480 0.83410 0.73517 0.73028 0.84339 0.84398 0.84406 0.83915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.37 13.64 55.57 0.76 -18.61 16 2 C 0.03 0.84 5.49 -17.28 -0.09 0.74 16 3 Si 1.07 21.70 24.85 -169.99 -4.22 17.48 16 4 H -0.27 -5.05 6.81 56.52 0.38 -4.67 16 5 H -0.25 -5.14 6.40 56.52 0.36 -4.78 16 6 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.42 -10.96 8.88 -37.94 -0.34 -11.30 16 8 H 0.11 3.17 6.28 -52.49 -0.33 2.84 16 9 C 0.12 2.92 5.30 -106.21 -0.56 2.36 16 10 C -0.16 -3.55 7.36 -39.12 -0.29 -3.84 16 11 C -0.17 -3.26 11.07 28.86 0.32 -2.94 16 12 S -0.01 -0.30 22.25 -107.50 -2.39 -2.69 16 13 C -0.43 -10.35 6.51 -35.88 -0.23 -10.58 16 14 C 0.60 14.36 7.88 -13.05 -0.10 14.25 16 15 O -0.56 -14.57 14.30 5.14 0.07 -14.50 16 16 N -0.54 -11.21 6.25 30.17 0.19 -11.02 16 17 N -0.51 -8.92 6.21 30.49 0.19 -8.74 16 18 C 0.55 9.33 7.89 -12.40 -0.10 9.23 16 19 O -0.53 -10.75 15.18 5.30 0.08 -10.66 16 20 C -0.16 -2.11 5.88 -104.91 -0.62 -2.73 16 21 C -0.06 -0.58 9.54 -39.19 -0.37 -0.95 16 22 C -0.14 -1.03 10.03 -39.64 -0.40 -1.42 16 23 C -0.07 -0.45 10.03 -39.51 -0.40 -0.84 16 24 C -0.17 -1.43 10.01 -39.56 -0.40 -1.83 16 25 C 0.16 2.02 7.29 -38.96 -0.28 1.73 16 26 F -0.11 -1.70 15.55 2.25 0.04 -1.67 16 27 H 0.30 7.27 8.73 -40.82 -0.36 6.92 16 28 H 0.13 2.54 4.44 -52.49 -0.23 2.31 16 29 H 0.15 2.27 8.06 -52.49 -0.42 1.84 16 30 H 0.42 8.61 7.08 -182.59 -1.29 7.31 16 31 H 0.43 6.78 6.03 -182.60 -1.10 5.68 16 32 H 0.14 1.23 6.40 -52.49 -0.34 0.90 16 33 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 34 H 0.14 0.51 8.06 -52.49 -0.42 0.08 16 35 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 322.91 15.07 4.87 4.87 Total: -1.00 -31.19 322.91 -8.48 -39.67 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -4.19 Total: 13.98 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -3.86 Total: -8.11 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 1.14 Total: -38.37 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: 0.15 Total: -25.16 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.22 Total: 17.48 kcal Atomic # 16 Polarization: -0.30 SS G_CDS: -2.39 Total: -2.69 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.19 -8.48 -39.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521879176.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.477 kcal (2) G-P(sol) polarization free energy of solvation -31.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds