Wall clock time and date at job start Tue Mar 31 2020 17:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30639 * 1 3 3 Si 1.86799 * 120.00026 * 2 1 4 4 H 1.48508 * 109.47049 * 83.28631 * 3 2 1 5 5 H 1.48505 * 109.47194 * 203.28499 * 3 2 1 6 6 H 1.48501 * 109.47153 * 323.28665 * 3 2 1 7 7 C 1.40306 * 119.99927 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00008 * 15.61635 * 7 2 1 9 9 C 1.40542 * 119.99854 * 195.61953 * 7 2 1 10 10 C 1.44183 * 123.71473 * 24.41003 * 9 7 2 11 11 C 1.32771 * 114.42891 * 179.75838 * 10 9 7 12 12 S 1.75476 * 111.36239 * 0.50186 * 11 10 9 13 13 C 1.39551 * 123.71246 * 204.71292 * 9 7 2 14 14 C 1.46240 * 125.22721 * 359.97438 * 13 9 7 15 15 O 1.21758 * 119.99968 * 359.97438 * 14 13 9 16 16 N 1.34778 * 119.99894 * 180.02562 * 14 13 9 17 17 N 1.40098 * 119.99953 * 179.97438 * 16 14 13 18 18 C 1.34778 * 119.99953 * 179.97438 * 17 16 14 19 19 O 1.21573 * 119.99901 * 359.97438 * 18 17 16 20 20 C 1.47688 * 120.00256 * 179.97438 * 18 17 16 21 21 C 1.39666 * 120.16257 * 359.97438 * 20 18 17 22 22 C 1.37855 * 119.87598 * 179.97438 * 21 20 18 23 23 C 1.38462 * 120.21891 * 0.02562 * 22 21 20 24 24 C 1.38200 * 120.33940 * 359.97438 * 23 22 21 25 25 C 1.38322 * 120.12000 * 359.74130 * 24 23 22 26 26 F 1.35100 * 120.11697 * 180.27608 * 25 24 23 27 27 H 0.97004 * 119.99879 * 173.15793 * 1 2 3 28 28 H 1.07991 * 122.78729 * 0.02562 * 10 9 7 29 29 H 1.07995 * 124.32387 * 180.21140 * 11 10 9 30 30 H 0.97006 * 120.00004 * 359.97438 * 16 14 13 31 31 H 0.96996 * 120.00158 * 359.97438 * 17 16 14 32 32 H 1.07994 * 120.06260 * 359.95153 * 21 20 18 33 33 H 1.07999 * 119.89095 * 179.97438 * 22 21 20 34 34 H 1.07999 * 119.83190 * 179.97438 * 23 22 21 35 35 H 1.08002 * 119.94060 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.3461 2.1283 1.3905 5 1 3.6017 1.4034 -0.5535 6 1 1.5159 2.6076 -0.8370 7 6 2.0079 -1.2151 -0.0005 8 1 1.4978 -2.1330 -0.2527 9 6 3.3744 -1.2377 0.3272 10 6 4.0195 -0.2355 1.1386 11 6 5.3162 -0.4406 1.3367 12 16 5.8654 -1.8940 0.5210 13 6 4.2575 -2.2293 -0.1020 14 6 3.8993 -3.3723 -0.9410 15 8 2.7509 -3.5131 -1.3201 16 7 4.8403 -4.2704 -1.2938 17 7 4.4971 -5.3657 -2.0971 18 6 5.4382 -6.2636 -2.4503 19 8 6.5850 -6.1227 -2.0721 20 6 5.0763 -7.4185 -3.2966 21 6 3.7597 -7.5840 -3.7325 22 6 3.4286 -8.6639 -4.5227 23 6 4.3967 -9.5851 -4.8851 24 6 5.7021 -9.4302 -4.4589 25 6 6.0511 -8.3486 -3.6704 26 9 7.3285 -8.1942 -3.2584 27 1 -0.4850 -0.8341 -0.1001 28 1 3.4909 0.6094 1.5545 29 1 5.9529 0.2070 1.9211 30 1 5.7552 -4.1585 -0.9915 31 1 3.5822 -5.4779 -2.3991 32 1 3.0025 -6.8674 -3.4507 33 1 2.4105 -8.7923 -4.8596 34 1 4.1302 -10.4291 -5.5041 35 1 6.4522 -10.1524 -4.7458 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001521879176.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:30 Heat of formation + Delta-G solvation = -54.044455 kcal Electronic energy + Delta-G solvation = -24711.764803 eV Core-core repulsion = 20716.019814 eV Total energy + Delta-G solvation = -3995.744990 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 334.057 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.00460 -41.58501 -40.23172 -39.28695 -38.15495 -36.33443 -35.31403 -33.55419 -31.76804 -31.56514 -30.70572 -28.14960 -25.36639 -23.99651 -23.53628 -22.75658 -22.42787 -21.16851 -20.12108 -19.27520 -18.60832 -18.30384 -17.84481 -17.20200 -17.03433 -16.66224 -16.57155 -16.36664 -15.95021 -15.62784 -15.55319 -15.26178 -15.09050 -14.81204 -14.44553 -14.22582 -13.78603 -13.57924 -13.37514 -13.10515 -12.96134 -12.66055 -12.46626 -12.41383 -11.95012 -11.75001 -11.50867 -11.37848 -11.10936 -10.75319 -10.32787 -9.90300 -9.80428 -9.63077 -9.34106 -9.13770 -6.69031 -0.48222 0.03234 0.08462 0.70708 1.13003 1.28052 1.46586 1.48855 1.53469 1.68048 1.78930 2.10184 2.30504 2.57023 2.86201 3.07072 3.08477 3.44214 3.60712 3.89490 4.14423 4.18737 4.22185 4.34372 4.58952 4.66670 4.87282 4.94787 5.10048 5.14864 5.19081 5.27926 5.28232 5.39646 5.53233 5.68635 5.75587 6.07870 6.22800 6.45633 6.65044 6.75041 7.42728 7.71680 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.019553 B = 0.002929 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.641669 B = 9558.534779 C =10817.195502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.007 3.993 3 Si 1.098 2.902 4 H -0.234 1.234 5 H -0.251 1.251 6 H -0.277 1.277 7 C -0.458 4.458 8 H 0.066 0.934 9 C 0.108 3.892 10 C -0.193 4.193 11 C -0.142 4.142 12 S 0.026 5.974 13 C -0.460 4.460 14 C 0.595 3.405 15 O -0.592 6.592 16 N -0.539 5.539 17 N -0.506 5.506 18 C 0.549 3.451 19 O -0.571 6.571 20 C -0.188 4.188 21 C -0.063 4.063 22 C -0.126 4.126 23 C -0.044 4.044 24 C -0.158 4.158 25 C 0.131 3.869 26 F -0.138 7.138 27 H 0.285 0.715 28 H 0.147 0.853 29 H 0.201 0.799 30 H 0.425 0.575 31 H 0.433 0.567 32 H 0.142 0.858 33 H 0.173 0.827 34 H 0.184 0.816 35 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.634 -12.648 -7.617 16.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.212 4.212 3 Si 0.915 3.085 4 H -0.159 1.159 5 H -0.175 1.175 6 H -0.203 1.203 7 C -0.489 4.489 8 H 0.084 0.916 9 C 0.097 3.903 10 C -0.226 4.226 11 C -0.277 4.277 12 S 0.283 5.717 13 C -0.580 4.580 14 C 0.393 3.607 15 O -0.476 6.476 16 N -0.288 5.288 17 N -0.253 5.253 18 C 0.339 3.661 19 O -0.450 6.450 20 C -0.193 4.193 21 C -0.082 4.082 22 C -0.144 4.144 23 C -0.061 4.061 24 C -0.176 4.176 25 C 0.111 3.889 26 F -0.116 7.116 27 H 0.096 0.904 28 H 0.164 0.836 29 H 0.217 0.783 30 H 0.267 0.733 31 H 0.277 0.723 32 H 0.160 0.840 33 H 0.190 0.810 34 H 0.201 0.799 35 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 7.744 -11.801 -7.625 16.043 hybrid contribution -1.350 -1.115 0.309 1.778 sum 6.394 -12.916 -7.317 16.163 Atomic orbital electron populations 1.70484 1.08699 1.33561 1.29178 1.28941 0.95819 1.07319 0.89087 0.83467 0.75374 0.69314 0.80320 1.15880 1.17517 1.20313 1.20915 0.94620 0.96943 1.36452 0.91571 1.18247 0.92649 0.90143 0.89267 1.21407 0.95682 1.01711 1.03811 1.25592 0.98298 1.00539 1.03262 1.82891 1.09947 1.24331 1.54537 1.22539 0.97490 1.10517 1.27476 1.17140 0.83460 0.80694 0.79439 1.90661 1.20596 1.77026 1.59365 1.44860 1.13196 1.19067 1.51669 1.44661 1.13616 1.18290 1.48753 1.18720 0.84257 0.82324 0.80847 1.90808 1.20299 1.76667 1.57254 1.19694 0.96700 0.96777 1.06146 1.21513 0.92686 0.98815 0.95170 1.21643 1.02410 0.93100 0.97236 1.21808 0.90321 0.98780 0.95237 1.21542 1.00125 0.96876 0.99065 1.18151 0.78056 0.95859 0.96838 1.91541 1.36206 1.95402 1.88454 0.90388 0.83609 0.78250 0.73318 0.72267 0.84050 0.80972 0.79864 0.81353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -41.67 13.64 21.89 0.30 -41.37 16 2 C 0.01 0.37 5.49 85.37 0.47 0.84 16 3 Si 1.10 42.77 24.85 68.60 1.70 44.48 16 4 H -0.23 -7.75 6.81 99.48 0.68 -7.07 16 5 H -0.25 -9.59 6.40 99.48 0.64 -8.96 16 6 H -0.28 -10.49 7.11 99.48 0.71 -9.78 16 7 C -0.46 -25.37 8.88 23.34 0.21 -25.17 16 8 H 0.07 4.15 6.28 -2.91 -0.02 4.13 16 9 C 0.11 5.47 5.30 -20.89 -0.11 5.36 16 10 C -0.19 -7.97 7.36 22.60 0.17 -7.80 16 11 C -0.14 -4.96 11.07 66.64 0.74 -4.22 16 12 S 0.03 0.99 22.25 -56.49 -1.26 -0.26 16 13 C -0.46 -22.56 6.51 24.67 0.16 -22.40 16 14 C 0.59 29.64 7.88 86.32 0.68 30.32 16 15 O -0.59 -32.67 14.30 -4.53 -0.06 -32.73 16 16 N -0.54 -23.16 6.25 -176.66 -1.10 -24.26 16 17 N -0.51 -18.75 6.21 -175.71 -1.09 -19.84 16 18 C 0.55 19.56 7.89 86.74 0.68 20.25 16 19 O -0.57 -24.14 15.18 -3.95 -0.06 -24.20 16 20 C -0.19 -5.03 5.88 -20.05 -0.12 -5.14 16 21 C -0.06 -1.20 9.54 22.52 0.21 -0.98 16 22 C -0.13 -1.43 10.03 22.23 0.22 -1.21 16 23 C -0.04 -0.39 10.03 22.31 0.22 -0.17 16 24 C -0.16 -2.29 10.01 22.28 0.22 -2.07 16 25 C 0.13 3.26 7.29 22.67 0.17 3.42 16 26 F -0.14 -4.27 15.55 44.97 0.70 -3.57 16 27 H 0.28 15.05 8.73 -92.71 -0.81 14.24 16 28 H 0.15 5.40 4.44 -2.92 -0.01 5.39 16 29 H 0.20 4.87 8.06 -2.91 -0.02 4.84 16 30 H 0.42 17.81 7.08 -213.31 -1.51 16.30 16 31 H 0.43 14.57 6.03 -213.33 -1.29 13.29 16 32 H 0.14 2.51 6.40 -2.91 -0.02 2.49 16 33 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16 34 H 0.18 0.11 8.06 -2.91 -0.02 0.08 16 35 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 Total: -1.00 -74.78 322.91 1.32 -73.45 By element: Atomic # 1 Polarization: 39.01 SS G_CDS: -1.73 Total: 37.28 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: 3.93 Total: -8.97 kcal Atomic # 7 Polarization: -83.58 SS G_CDS: -1.90 Total: -85.47 kcal Atomic # 8 Polarization: -56.80 SS G_CDS: -0.12 Total: -56.93 kcal Atomic # 9 Polarization: -4.27 SS G_CDS: 0.70 Total: -3.57 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 1.70 Total: 44.48 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -1.26 Total: -0.26 kcal Total: -74.78 1.32 -73.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521879176.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.408 kcal (2) G-P(sol) polarization free energy of solvation -74.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds