Wall clock time and date at job start Tue Mar 31 2020 17:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46504 * 108.70397 * 182.63659 * 3 2 1 5 5 C 1.34773 * 120.00115 * 298.46088 * 4 3 2 6 6 O 1.21547 * 120.00064 * 0.02562 * 5 4 3 7 7 C 1.47861 * 119.99924 * 180.02562 * 5 4 3 8 8 C 1.39673 * 120.10298 * 359.72420 * 7 5 4 9 9 C 1.38043 * 120.03817 * 179.79109 * 8 7 5 10 10 C 1.38169 * 120.24429 * 0.46170 * 9 8 7 11 11 C 1.39185 * 120.20227 * 359.79404 * 10 9 8 12 12 S 1.76206 * 120.01882 * 179.97438 * 11 10 9 13 13 C 1.76202 * 99.99753 * 265.52664 * 12 11 10 14 14 H 1.08001 * 120.00247 * 5.11409 * 13 12 11 15 15 C 1.38729 * 120.00001 * 185.12394 * 13 12 11 16 16 N 1.31628 * 119.99779 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00301 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46701 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.46887 * 119.99557 * 17 15 13 20 20 H 1.48496 * 109.47081 * 239.99877 * 17 15 13 21 21 C 1.38875 * 119.95945 * 359.97429 * 11 10 9 22 22 C 1.52328 * 108.87322 * 301.09822 * 3 2 1 23 23 C 1.54258 * 112.58909 * 120.82119 * 22 3 2 24 24 S 1.83951 * 102.75286 * 335.37678 * 23 22 3 25 25 C 1.54260 * 108.86974 * 64.18065 * 3 2 1 26 26 H 0.96999 * 119.99602 * 118.46944 * 4 3 2 27 27 H 1.08004 * 119.97825 * 0.02562 * 8 7 5 28 28 H 1.08001 * 119.87187 * 180.21197 * 9 8 7 29 29 H 1.08001 * 119.89797 * 179.76618 * 10 9 8 30 30 H 0.97003 * 119.99675 * 180.02562 * 16 15 13 31 31 H 1.07995 * 120.11996 * 180.02562 * 21 11 10 32 32 H 1.08998 * 108.86523 * 0.02562 * 22 3 2 33 33 H 1.08995 * 108.86843 * 241.64529 * 22 3 2 34 34 H 1.08993 * 110.78698 * 93.74837 * 23 22 3 35 35 H 1.08999 * 110.78634 * 217.01067 * 23 22 3 36 36 H 1.09002 * 110.78811 * 21.96883 * 25 3 2 37 37 H 1.08996 * 110.79347 * 145.24607 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0772 1.3871 0.0638 5 6 2.7661 2.2499 -0.9236 6 8 2.0958 1.8780 -1.8669 7 6 3.2401 3.6490 -0.8594 8 6 4.0056 4.0802 0.2264 9 6 4.4511 5.3856 0.2828 10 6 4.1348 6.2732 -0.7277 11 6 3.3681 5.8557 -1.8117 12 16 2.9670 6.9920 -3.0974 13 6 1.3883 7.5406 -2.5392 14 1 1.0092 7.2114 -1.5830 15 6 0.6322 8.3954 -3.3281 16 7 1.0944 8.7969 -4.4933 17 14 -1.0417 8.9765 -2.7367 18 1 -1.3287 8.3854 -1.4050 19 1 -1.0428 10.4577 -2.6319 20 1 -2.0844 8.5478 -3.7032 21 6 2.9195 4.5432 -1.8795 22 6 3.1011 -0.7436 1.2342 23 6 3.9838 -1.9582 0.8805 24 16 3.4254 -2.3846 -0.8196 25 6 3.1072 -0.6349 -1.3140 26 1 3.6119 1.6839 0.8168 27 1 4.2523 3.3909 1.0204 28 1 5.0457 5.7152 1.1220 29 1 4.4831 7.2942 -0.6759 30 1 0.5658 9.3948 -5.0447 31 1 2.3249 4.2164 -2.7196 32 1 2.2393 -1.0890 1.8052 33 1 3.6783 -0.0566 1.8530 34 1 5.0386 -1.6838 0.8838 35 1 3.7984 -2.7842 1.5671 36 1 2.3381 -0.5846 -2.0847 37 1 4.0244 -0.1531 -1.6528 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001534755609.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:53 Heat of formation + Delta-G solvation = 27.916332 kcal Electronic energy + Delta-G solvation = -22728.288367 eV Core-core repulsion = 19302.310640 eV Total energy + Delta-G solvation = -3425.977727 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 334.055 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.82153 -38.67039 -37.39631 -35.75891 -33.42749 -32.54845 -31.16580 -30.65524 -29.60833 -26.42075 -25.61487 -23.80319 -22.62459 -22.28433 -20.79976 -18.66318 -18.44172 -17.61795 -17.10768 -16.23725 -15.79974 -15.32943 -15.25448 -14.88840 -14.83979 -14.57867 -14.26829 -14.00326 -13.91818 -13.53424 -13.27392 -13.03997 -12.90375 -12.59126 -12.48284 -12.38577 -12.09358 -11.94688 -11.74912 -11.25240 -11.18827 -11.13449 -10.75961 -10.65166 -10.11087 -9.91989 -9.79167 -9.21328 -9.10677 -8.73725 -8.20144 -8.11721 -6.76946 -6.33063 -4.07592 0.97887 1.25887 1.54823 1.64365 2.13657 2.50959 2.73249 3.00736 3.15679 3.18628 3.26193 3.30869 3.40953 3.77010 3.98661 4.00681 4.18682 4.28301 4.34220 4.64630 4.87615 4.93514 4.95327 5.01885 5.03619 5.11040 5.16010 5.37831 5.41781 5.60816 5.74543 5.80108 5.86746 6.12401 6.42692 6.51369 6.80957 7.01902 7.10886 7.25055 7.53686 7.92051 8.28465 9.13255 10.73698 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.017763 B = 0.002804 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.900767 B = 9982.850024 C =10621.350201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C 0.198 3.802 3 C 0.286 3.714 4 N -0.725 5.725 5 C 0.566 3.434 6 O -0.516 6.516 7 C -0.156 4.156 8 C -0.089 4.089 9 C -0.140 4.140 10 C -0.051 4.051 11 C -0.106 4.106 12 S -0.033 6.033 13 C -0.521 4.521 14 H 0.076 0.924 15 C 0.074 3.926 16 N -0.869 5.869 17 Si 0.920 3.080 18 H -0.271 1.271 19 H -0.278 1.278 20 H -0.278 1.278 21 C -0.016 4.016 22 C -0.128 4.128 23 C -0.067 4.067 24 S -0.277 6.277 25 C -0.060 4.060 26 H 0.410 0.590 27 H 0.118 0.882 28 H 0.125 0.875 29 H 0.133 0.867 30 H 0.270 0.730 31 H 0.140 0.860 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.116 0.884 36 H 0.125 0.875 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.133 -17.794 14.650 25.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.068 5.068 2 C -0.123 4.123 3 C 0.194 3.806 4 N -0.383 5.383 5 C 0.355 3.645 6 O -0.390 6.390 7 C -0.161 4.161 8 C -0.108 4.108 9 C -0.160 4.160 10 C -0.072 4.072 11 C -0.216 4.216 12 S 0.201 5.799 13 C -0.668 4.668 14 H 0.094 0.906 15 C -0.135 4.135 16 N -0.504 5.504 17 Si 0.746 3.254 18 H -0.195 1.195 19 H -0.204 1.204 20 H -0.204 1.204 21 C -0.037 4.037 22 C -0.168 4.168 23 C -0.215 4.215 24 S -0.051 6.051 25 C -0.210 4.210 26 H 0.248 0.752 27 H 0.136 0.864 28 H 0.143 0.857 29 H 0.151 0.849 30 H 0.080 0.920 31 H 0.158 0.842 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.134 0.866 36 H 0.143 0.857 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 9.347 -18.668 12.205 24.183 hybrid contribution -0.968 1.268 2.357 2.846 sum 8.379 -17.400 14.562 24.188 Atomic orbital electron populations 1.81196 1.12335 1.06101 1.07197 1.28905 0.94625 0.94596 0.94151 1.18165 0.82051 0.84290 0.96112 1.46364 1.56839 1.08585 1.26511 1.18602 0.78845 0.85526 0.81510 1.90820 1.37279 1.78150 1.32799 1.19691 1.05134 0.92594 0.98697 1.21115 0.96975 0.96387 0.96296 1.21069 1.01877 0.93456 0.99566 1.22011 0.94156 0.99580 0.91498 1.22889 0.99528 0.97945 1.01280 1.83640 1.24448 1.45662 1.26119 1.22871 1.02941 1.33594 1.07383 0.90576 1.25004 0.98650 0.95427 0.94450 1.69993 1.37901 1.32272 1.10270 0.86072 0.81867 0.78435 0.78984 1.19505 1.20411 1.20383 1.21977 0.93838 0.91536 0.96373 1.22240 1.01775 0.97318 0.95481 1.24134 1.02341 0.99719 0.95315 1.88461 1.86932 1.12659 1.17030 1.24738 1.06415 0.91750 0.98131 0.75163 0.86429 0.85678 0.84927 0.92045 0.84219 0.88331 0.87941 0.88026 0.86611 0.85656 0.86654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -6.21 18.54 42.16 0.78 -5.43 16 2 C 0.20 2.53 12.13 -20.76 -0.25 2.28 16 3 C 0.29 2.48 0.87 -134.29 -0.12 2.36 16 4 N -0.72 -6.39 4.95 -50.86 -0.25 -6.64 16 5 C 0.57 7.80 7.11 -12.32 -0.09 7.71 16 6 O -0.52 -9.01 14.14 5.32 0.08 -8.93 16 7 C -0.16 -2.33 5.87 -105.00 -0.62 -2.94 16 8 C -0.09 -1.02 9.54 -39.12 -0.37 -1.40 16 9 C -0.14 -1.77 10.02 -39.68 -0.40 -2.17 16 10 C -0.05 -0.85 9.79 -39.26 -0.38 -1.24 16 11 C -0.11 -2.14 5.45 -38.99 -0.21 -2.36 16 12 S -0.03 -0.84 21.41 -107.50 -2.30 -3.14 16 13 C -0.52 -14.50 9.46 30.91 0.29 -14.21 16 14 H 0.08 2.11 7.79 -52.49 -0.41 1.70 16 15 C 0.07 2.06 5.49 -17.46 -0.10 1.96 16 16 N -0.87 -25.22 13.22 55.49 0.73 -24.48 16 17 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 18 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 C -0.02 -0.30 9.34 -38.92 -0.36 -0.66 16 22 C -0.13 -0.57 5.77 -26.42 -0.15 -0.72 16 23 C -0.07 -0.27 7.45 37.82 0.28 0.01 16 24 S -0.28 -2.35 23.31 -107.50 -2.51 -4.86 16 25 C -0.06 -0.57 5.21 37.82 0.20 -0.37 16 26 H 0.41 2.12 5.94 -40.82 -0.24 1.87 16 27 H 0.12 0.80 6.40 -52.48 -0.34 0.46 16 28 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 29 H 0.13 2.10 8.06 -52.49 -0.42 1.68 16 30 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 31 H 0.14 2.92 7.65 -52.49 -0.40 2.52 16 32 H 0.10 0.44 7.50 -51.93 -0.39 0.05 16 33 H 0.10 0.15 7.24 -51.93 -0.38 -0.22 16 34 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.12 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.13 1.48 7.35 -51.93 -0.38 1.10 16 37 H 0.12 1.00 8.00 -51.93 -0.42 0.59 16 LS Contribution 348.51 15.07 5.25 5.25 Total: -1.00 -34.85 348.51 -9.30 -44.15 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -3.78 Total: -0.61 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -2.28 Total: -11.74 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 1.26 Total: -36.55 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.08 Total: -8.93 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -3.19 SS G_CDS: -4.81 Total: -7.99 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.85 -9.30 -44.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001534755609.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.068 kcal (2) G-P(sol) polarization free energy of solvation -34.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds