Wall clock time and date at job start Tue Mar 31 2020 17:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46504 * 108.70397 * 182.63659 * 3 2 1 5 5 C 1.34773 * 120.00115 * 298.46088 * 4 3 2 6 6 O 1.21547 * 120.00064 * 0.02562 * 5 4 3 7 7 C 1.47861 * 119.99924 * 180.02562 * 5 4 3 8 8 C 1.39673 * 120.10298 * 359.72420 * 7 5 4 9 9 C 1.38043 * 120.03817 * 179.79109 * 8 7 5 10 10 C 1.38169 * 120.24429 * 0.46170 * 9 8 7 11 11 C 1.39185 * 120.20227 * 359.79404 * 10 9 8 12 12 S 1.76206 * 120.01882 * 179.97438 * 11 10 9 13 13 C 1.76202 * 99.99753 * 265.52664 * 12 11 10 14 14 H 1.08001 * 120.00247 * 5.11409 * 13 12 11 15 15 C 1.38729 * 120.00001 * 185.12394 * 13 12 11 16 16 N 1.31628 * 119.99779 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00301 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46701 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.46887 * 119.99557 * 17 15 13 20 20 H 1.48496 * 109.47081 * 239.99877 * 17 15 13 21 21 C 1.38875 * 119.95945 * 359.97429 * 11 10 9 22 22 C 1.52328 * 108.87322 * 301.09822 * 3 2 1 23 23 C 1.54258 * 112.58909 * 120.82119 * 22 3 2 24 24 S 1.83951 * 102.75286 * 335.37678 * 23 22 3 25 25 C 1.54260 * 108.86974 * 64.18065 * 3 2 1 26 26 H 0.96999 * 119.99602 * 118.46944 * 4 3 2 27 27 H 1.08004 * 119.97825 * 0.02562 * 8 7 5 28 28 H 1.08001 * 119.87187 * 180.21197 * 9 8 7 29 29 H 1.08001 * 119.89797 * 179.76618 * 10 9 8 30 30 H 0.97003 * 119.99675 * 180.02562 * 16 15 13 31 31 H 1.07995 * 120.11996 * 180.02562 * 21 11 10 32 32 H 1.08998 * 108.86523 * 0.02562 * 22 3 2 33 33 H 1.08995 * 108.86843 * 241.64529 * 22 3 2 34 34 H 1.08993 * 110.78698 * 93.74837 * 23 22 3 35 35 H 1.08999 * 110.78634 * 217.01067 * 23 22 3 36 36 H 1.09002 * 110.78811 * 21.96883 * 25 3 2 37 37 H 1.08996 * 110.79347 * 145.24607 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0772 1.3871 0.0638 5 6 2.7661 2.2499 -0.9236 6 8 2.0958 1.8780 -1.8669 7 6 3.2401 3.6490 -0.8594 8 6 4.0056 4.0802 0.2264 9 6 4.4511 5.3856 0.2828 10 6 4.1348 6.2732 -0.7277 11 6 3.3681 5.8557 -1.8117 12 16 2.9670 6.9920 -3.0974 13 6 1.3883 7.5406 -2.5392 14 1 1.0092 7.2114 -1.5830 15 6 0.6322 8.3954 -3.3281 16 7 1.0944 8.7969 -4.4933 17 14 -1.0417 8.9765 -2.7367 18 1 -1.3287 8.3854 -1.4050 19 1 -1.0428 10.4577 -2.6319 20 1 -2.0844 8.5478 -3.7032 21 6 2.9195 4.5432 -1.8795 22 6 3.1011 -0.7436 1.2342 23 6 3.9838 -1.9582 0.8805 24 16 3.4254 -2.3846 -0.8196 25 6 3.1072 -0.6349 -1.3140 26 1 3.6119 1.6839 0.8168 27 1 4.2523 3.3909 1.0204 28 1 5.0457 5.7152 1.1220 29 1 4.4831 7.2942 -0.6759 30 1 0.5658 9.3948 -5.0447 31 1 2.3249 4.2164 -2.7196 32 1 2.2393 -1.0890 1.8052 33 1 3.6783 -0.0566 1.8530 34 1 5.0386 -1.6838 0.8838 35 1 3.7984 -2.7842 1.5671 36 1 2.3381 -0.5846 -2.0847 37 1 4.0244 -0.1531 -1.6528 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001534755609.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:52 Heat of formation + Delta-G solvation = 4.116933 kcal Electronic energy + Delta-G solvation = -22729.320386 eV Core-core repulsion = 19302.310640 eV Total energy + Delta-G solvation = -3427.009747 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 334.055 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.81780 -39.75231 -38.48356 -36.76822 -34.68102 -34.26811 -32.18530 -31.86249 -30.37797 -27.77347 -27.12312 -24.89224 -23.66411 -23.12416 -21.85283 -20.06347 -19.48826 -19.05520 -17.92765 -17.24404 -16.96606 -16.82144 -16.60756 -15.98493 -15.87254 -15.51465 -15.44630 -15.10372 -14.82616 -14.71611 -14.60587 -14.11491 -13.85281 -13.80332 -13.33625 -13.27209 -13.12872 -13.07894 -13.01861 -12.79998 -12.63644 -12.41457 -12.33723 -11.75770 -11.31903 -11.25307 -11.14782 -10.77175 -10.64664 -9.95048 -9.70289 -8.84063 -8.82133 -8.42428 -6.21733 -0.21783 0.26452 0.61706 1.12744 1.20566 1.26729 1.32821 1.43017 1.57250 1.61259 1.72333 2.09080 2.21656 2.46620 2.79956 2.90671 3.14030 3.39400 3.43909 3.57212 3.90372 3.95552 4.03820 4.08919 4.16461 4.36693 4.48782 4.51173 4.67469 4.70580 4.80433 4.91821 4.93258 5.04535 5.20433 5.33160 5.36661 5.52439 5.87290 6.12801 6.22200 6.30605 6.94534 6.98468 8.64701 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.017763 B = 0.002804 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.900767 B = 9982.850024 C =10621.350201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C 0.216 3.784 3 C 0.288 3.712 4 N -0.695 5.695 5 C 0.566 3.434 6 O -0.563 6.563 7 C -0.157 4.157 8 C -0.056 4.056 9 C -0.120 4.120 10 C -0.061 4.061 11 C -0.131 4.131 12 S -0.098 6.098 13 C -0.535 4.535 14 H 0.066 0.934 15 C 0.020 3.980 16 N -0.905 5.905 17 Si 0.989 3.011 18 H -0.267 1.267 19 H -0.263 1.263 20 H -0.274 1.274 21 C -0.045 4.045 22 C -0.124 4.124 23 C -0.045 4.045 24 S -0.332 6.332 25 C -0.056 4.056 26 H 0.433 0.567 27 H 0.187 0.813 28 H 0.179 0.821 29 H 0.133 0.867 30 H 0.274 0.726 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.151 0.849 34 H 0.130 0.870 35 H 0.137 0.863 36 H 0.089 0.911 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.437 -19.146 19.859 30.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.132 5.132 2 C -0.104 4.104 3 C 0.195 3.805 4 N -0.354 5.354 5 C 0.355 3.645 6 O -0.441 6.441 7 C -0.162 4.162 8 C -0.074 4.074 9 C -0.139 4.139 10 C -0.082 4.082 11 C -0.242 4.242 12 S 0.137 5.863 13 C -0.682 4.682 14 H 0.084 0.916 15 C -0.185 4.185 16 N -0.542 5.542 17 Si 0.811 3.189 18 H -0.192 1.192 19 H -0.188 1.188 20 H -0.200 1.200 21 C -0.067 4.067 22 C -0.163 4.163 23 C -0.192 4.192 24 S -0.106 6.106 25 C -0.206 4.206 26 H 0.277 0.723 27 H 0.204 0.796 28 H 0.197 0.803 29 H 0.151 0.849 30 H 0.083 0.917 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.169 0.831 34 H 0.149 0.851 35 H 0.155 0.845 36 H 0.107 0.893 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 11.694 -20.034 17.465 29.036 hybrid contribution -1.544 1.517 0.847 2.324 sum 10.150 -18.517 18.312 27.950 Atomic orbital electron populations 1.81200 1.14506 1.08104 1.09420 1.29780 0.95625 0.92756 0.92212 1.18636 0.79562 0.84345 0.97930 1.46035 1.55697 1.07979 1.25663 1.18533 0.78384 0.85689 0.81887 1.90827 1.39417 1.78820 1.35036 1.19802 1.05357 0.92521 0.98510 1.21815 0.92983 0.97027 0.95596 1.21600 1.00541 0.92786 0.98991 1.22111 0.93733 1.00833 0.91547 1.22483 1.03101 0.97026 1.01609 1.83496 1.23942 1.48198 1.30642 1.23082 1.04105 1.33850 1.07143 0.91602 1.25975 1.02564 0.95452 0.94542 1.70111 1.39507 1.33077 1.11457 0.85041 0.76867 0.78550 0.78411 1.19160 1.18797 1.19980 1.21627 0.95363 0.92343 0.97367 1.22323 1.02748 0.98016 0.93252 1.24383 1.03636 1.00020 0.91188 1.88708 1.87583 1.12410 1.21923 1.24559 1.05551 0.92691 0.97814 0.72290 0.79607 0.80344 0.84911 0.91702 0.88304 0.87886 0.83096 0.85139 0.84501 0.89273 0.85879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -14.68 18.54 20.01 0.37 -14.31 16 2 C 0.22 5.36 12.13 89.44 1.08 6.45 16 3 C 0.29 4.16 0.87 2.00 0.00 4.16 16 4 N -0.69 -9.30 4.95 -433.10 -2.14 -11.44 16 5 C 0.57 14.76 7.11 86.79 0.62 15.38 16 6 O -0.56 -20.48 14.14 -3.86 -0.05 -20.53 16 7 C -0.16 -4.38 5.87 -20.11 -0.12 -4.50 16 8 C -0.06 -0.96 9.54 22.57 0.22 -0.74 16 9 C -0.12 -2.38 10.02 22.21 0.22 -2.16 16 10 C -0.06 -1.96 9.79 22.48 0.22 -1.74 16 11 C -0.13 -5.53 5.45 22.65 0.12 -5.40 16 12 S -0.10 -5.27 21.41 -56.49 -1.21 -6.48 16 13 C -0.53 -31.41 9.46 67.94 0.64 -30.77 16 14 H 0.07 3.85 7.79 -2.91 -0.02 3.82 16 15 C 0.02 1.15 5.49 84.84 0.47 1.62 16 16 N -0.91 -54.84 13.22 21.64 0.29 -54.56 16 17 Si 0.99 45.22 29.55 68.60 2.03 47.24 16 18 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 19 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 20 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 21 C -0.05 -1.80 9.34 22.70 0.21 -1.59 16 22 C -0.12 -0.41 5.77 30.80 0.18 -0.24 16 23 C -0.04 -0.13 7.45 72.41 0.54 0.41 16 24 S -0.33 -5.12 23.31 -56.49 -1.32 -6.44 16 25 C -0.06 -1.02 5.21 72.41 0.38 -0.64 16 26 H 0.43 1.25 5.94 -92.71 -0.55 0.70 16 27 H 0.19 0.69 6.40 -2.91 -0.02 0.67 16 28 H 0.18 1.82 8.06 -2.91 -0.02 1.80 16 29 H 0.13 4.14 8.06 -2.91 -0.02 4.11 16 30 H 0.27 15.35 8.31 -92.71 -0.77 14.57 16 31 H 0.10 4.64 7.65 -2.91 -0.02 4.62 16 32 H 0.10 0.40 7.50 -2.39 -0.02 0.38 16 33 H 0.15 -0.85 7.24 -2.39 -0.02 -0.87 16 34 H 0.13 -0.25 8.14 -2.39 -0.02 -0.27 16 35 H 0.14 -0.05 8.14 -2.39 -0.02 -0.07 16 36 H 0.09 2.28 7.35 -2.39 -0.02 2.26 16 37 H 0.12 1.98 8.00 -2.39 -0.02 1.96 16 Total: -1.00 -89.27 348.51 3.32 -85.95 By element: Atomic # 1 Polarization: -0.25 SS G_CDS: 0.58 Total: 0.33 kcal Atomic # 6 Polarization: -24.54 SS G_CDS: 4.78 Total: -19.76 kcal Atomic # 7 Polarization: -78.83 SS G_CDS: -1.49 Total: -80.31 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.05 Total: -20.53 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Atomic # 16 Polarization: -10.39 SS G_CDS: -2.53 Total: -12.92 kcal Total: -89.27 3.32 -85.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001534755609.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.070 kcal (2) G-P(sol) polarization free energy of solvation -89.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds