Wall clock time and date at job start Tue Mar 31 2020 17:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00469 * 2 1 4 4 H 1.48502 * 109.47192 * 95.08868 * 3 2 1 5 5 H 1.48501 * 109.47649 * 215.08910 * 3 2 1 6 6 H 1.48498 * 109.47083 * 335.09260 * 3 2 1 7 7 C 1.37888 * 119.99650 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99610 * 355.10578 * 7 2 1 9 9 C 1.50694 * 119.99802 * 175.10943 * 7 2 1 10 10 H 1.09004 * 109.47105 * 305.23315 * 9 7 2 11 11 N 1.46500 * 109.47630 * 65.23416 * 9 7 2 12 12 C 1.34775 * 120.00150 * 204.99938 * 11 9 7 13 13 O 1.21551 * 120.00137 * 0.02562 * 12 11 9 14 14 C 1.47861 * 119.99879 * 179.97438 * 12 11 9 15 15 C 1.39521 * 120.11598 * 359.72914 * 14 12 11 16 16 C 1.38455 * 119.78737 * 179.70060 * 15 14 12 17 17 O 1.35919 * 119.98217 * 180.29734 * 16 15 14 18 18 C 1.38854 * 120.03488 * 0.59192 * 16 15 14 19 19 C 1.38244 * 120.23577 * 359.68101 * 18 16 15 20 20 N 1.48015 * 119.89641 * 180.02562 * 19 18 16 21 21 O 1.21798 * 120.00203 * 179.97438 * 20 19 18 22 22 O 1.21801 * 119.99838 * 359.97438 * 20 19 18 23 23 C 1.38004 * 120.20539 * 0.02562 * 19 18 16 24 24 C 1.52997 * 109.47051 * 185.23694 * 9 7 2 25 25 F 1.39904 * 109.47185 * 54.98019 * 24 9 7 26 26 F 1.39898 * 109.47285 * 174.98157 * 24 9 7 27 27 F 1.39896 * 109.47138 * 294.98309 * 24 9 7 28 28 H 0.96996 * 119.99743 * 0.02562 * 1 2 3 29 29 H 0.96993 * 119.99607 * 24.99827 * 11 9 7 30 30 H 1.07997 * 120.10587 * 359.97438 * 15 14 12 31 31 H 0.96699 * 113.99782 * 270.29424 * 17 16 15 32 32 H 1.07995 * 119.88237 * 179.70137 * 18 16 15 33 33 H 1.08004 * 120.01742 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.6043 1.9842 1.3946 5 1 3.4889 1.4735 -0.8048 6 1 1.3971 2.6813 -0.5896 7 6 2.0045 -1.1942 -0.0005 8 1 1.4673 -2.1277 0.0788 9 6 3.5073 -1.1966 -0.1118 10 1 3.8068 -0.6402 -1.0000 11 7 4.0861 -0.5663 1.0773 12 6 5.3076 -0.0004 1.0131 13 8 5.9288 -0.0124 -0.0316 14 6 5.8915 0.6362 2.2131 15 6 5.1777 0.6572 3.4118 16 6 5.7336 1.2496 4.5330 17 8 5.0443 1.2671 5.7043 18 6 6.9923 1.8313 4.4599 19 6 7.6982 1.8162 3.2713 20 7 9.0396 2.4380 3.2020 21 8 9.6634 2.4253 2.1560 22 8 9.5196 2.9624 4.1910 23 6 7.1561 1.2231 2.1493 24 6 4.0084 -2.6381 -0.2200 25 9 3.3685 -3.2752 -1.2887 26 9 5.3903 -2.6363 -0.4380 27 9 3.7245 -3.3209 0.9675 28 1 -0.4849 0.8400 -0.0004 29 1 3.5903 -0.5564 1.9109 30 1 4.1967 0.2090 3.4660 31 1 4.4760 2.0416 5.8146 32 1 7.4215 2.2970 5.3347 33 1 7.7104 1.2126 1.2225 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001558441796.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:56 Heat of formation + Delta-G solvation = -204.790786 kcal Electronic energy + Delta-G solvation = -29188.231345 eV Core-core repulsion = 24188.967103 eV Total energy + Delta-G solvation = -4999.264242 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.065 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.25814 -46.77397 -46.73555 -42.41738 -40.64848 -39.17320 -37.13434 -36.75082 -35.25665 -33.06706 -32.29694 -30.68776 -29.32402 -26.84772 -25.21416 -24.54202 -22.84631 -21.72796 -20.82052 -19.69051 -18.93211 -18.34656 -17.93754 -17.76212 -17.69497 -17.32328 -17.01916 -16.79708 -16.56441 -16.11341 -15.45481 -15.11888 -14.57460 -14.45639 -13.72419 -13.64777 -13.28460 -13.20296 -13.18314 -13.03348 -12.93618 -12.89247 -12.84412 -12.50160 -11.96295 -11.85723 -11.70141 -11.37237 -11.32488 -11.31424 -10.90513 -10.44236 -10.12655 -10.00864 -9.91378 -9.52109 -9.20787 -8.80896 -6.70287 -4.85310 -0.49945 0.19927 0.96676 1.07913 2.36787 2.83009 3.02161 3.08580 3.13344 3.27135 3.43258 3.71450 3.90720 4.08629 4.21011 4.36302 4.42291 4.67024 4.74395 4.78068 4.90959 5.01602 5.17709 5.28220 5.46637 5.53468 5.66521 6.12588 6.16528 6.62488 6.73910 6.98296 7.42157 7.58694 7.87962 8.26292 8.37972 8.81908 10.37814 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.013301 B = 0.004367 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.634116 B = 6410.110125 C = 7111.940158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.097 3.903 3 Si 0.873 3.127 4 H -0.272 1.272 5 H -0.255 1.255 6 H -0.283 1.283 7 C -0.539 4.539 8 H 0.098 0.902 9 C 0.202 3.798 10 H 0.097 0.903 11 N -0.707 5.707 12 C 0.541 3.459 13 O -0.517 6.517 14 C -0.106 4.106 15 C -0.062 4.062 16 C 0.110 3.890 17 O -0.482 6.482 18 C -0.069 4.069 19 C -0.036 4.036 20 N 0.030 4.970 21 O -0.148 6.148 22 O -0.159 6.159 23 C -0.010 4.010 24 C 0.444 3.556 25 F -0.180 7.180 26 F -0.193 7.193 27 F -0.189 7.189 28 H 0.277 0.723 29 H 0.400 0.600 30 H 0.158 0.842 31 H 0.401 0.599 32 H 0.163 0.837 33 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.714 4.087 9.211 12.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.113 4.113 3 Si 0.699 3.301 4 H -0.198 1.198 5 H -0.179 1.179 6 H -0.209 1.209 7 C -0.576 4.576 8 H 0.116 0.884 9 C 0.100 3.900 10 H 0.115 0.885 11 N -0.361 5.361 12 C 0.326 3.674 13 O -0.394 6.394 14 C -0.110 4.110 15 C -0.082 4.082 16 C 0.064 3.936 17 O -0.293 6.293 18 C -0.088 4.088 19 C -0.119 4.119 20 N 0.551 4.449 21 O -0.366 6.366 22 O -0.374 6.374 23 C -0.030 4.030 24 C 0.388 3.612 25 F -0.162 7.162 26 F -0.174 7.174 27 F -0.171 7.171 28 H 0.087 0.913 29 H 0.238 0.762 30 H 0.175 0.825 31 H 0.258 0.742 32 H 0.181 0.819 33 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 7.577 3.303 8.582 11.915 hybrid contribution 0.219 1.236 0.493 1.349 sum 7.796 4.539 9.076 12.796 Atomic orbital electron populations 1.69852 1.06345 1.28501 1.44082 1.24929 0.94794 0.99197 0.92381 0.86911 0.80919 0.82859 0.79413 1.19798 1.17924 1.20929 1.20809 0.85614 0.96707 1.54493 0.88361 1.20436 0.96360 0.84596 0.88630 0.88510 1.47717 1.16399 1.56012 1.15959 1.18247 0.82512 0.79369 0.87229 1.90812 1.60441 1.58321 1.29845 1.20105 0.94499 1.01263 0.95165 1.22257 1.00625 0.94698 0.90592 1.17872 0.90916 0.98666 0.86104 1.84902 1.61334 1.49023 1.33994 1.21393 0.94280 0.96144 0.97025 1.20720 0.86182 1.07779 0.97251 1.43489 1.02230 0.98802 1.00413 1.94588 1.60327 1.62813 1.18896 1.94533 1.71204 1.44779 1.26899 1.21157 0.93822 0.89706 0.98275 1.21352 0.74489 0.92094 0.73254 1.93128 1.81869 1.84137 1.57049 1.93157 1.32464 1.97148 1.94644 1.93090 1.93366 1.82686 1.47936 0.91283 0.76187 0.82457 0.74178 0.81927 0.81169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.05 13.96 55.43 0.77 -21.27 16 2 C 0.10 2.34 5.47 -17.82 -0.10 2.24 16 3 Si 0.87 18.32 25.79 -169.99 -4.38 13.94 16 4 H -0.27 -5.19 7.11 56.52 0.40 -4.78 16 5 H -0.26 -5.55 6.57 56.52 0.37 -5.18 16 6 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.54 -12.72 8.65 -34.44 -0.30 -13.01 16 8 H 0.10 2.55 7.95 -52.49 -0.42 2.14 16 9 C 0.20 4.25 1.42 -69.09 -0.10 4.15 16 10 H 0.10 2.16 6.52 -51.93 -0.34 1.82 16 11 N -0.71 -12.86 2.84 -55.88 -0.16 -13.02 16 12 C 0.54 9.60 6.97 -12.32 -0.09 9.52 16 13 O -0.52 -10.64 14.91 5.32 0.08 -10.56 16 14 C -0.11 -1.48 5.87 -104.99 -0.62 -2.10 16 15 C -0.06 -0.71 9.48 -39.02 -0.37 -1.08 16 16 C 0.11 1.06 6.70 -39.27 -0.26 0.80 16 17 O -0.48 -3.76 13.50 -19.48 -0.26 -4.02 16 18 C -0.07 -0.69 9.49 -39.35 -0.37 -1.06 16 19 C -0.04 -0.45 6.84 -80.03 -0.55 -0.99 16 20 N 0.03 0.41 4.45 33.92 0.15 0.56 16 21 O -0.15 -2.19 18.44 -29.46 -0.54 -2.73 16 22 O -0.16 -2.15 18.44 -29.46 -0.54 -2.69 16 23 C -0.01 -0.13 9.10 -39.17 -0.36 -0.49 16 24 C 0.44 9.08 2.79 37.16 0.10 9.19 16 25 F -0.18 -3.79 16.86 2.25 0.04 -3.75 16 26 F -0.19 -3.93 15.83 2.25 0.04 -3.90 16 27 F -0.19 -3.75 16.97 2.25 0.04 -3.71 16 28 H 0.28 6.65 8.31 -40.82 -0.34 6.31 16 29 H 0.40 6.40 6.61 -40.82 -0.27 6.13 16 30 H 0.16 1.58 6.40 -52.49 -0.34 1.25 16 31 H 0.40 1.21 9.06 45.56 0.41 1.62 16 32 H 0.16 1.33 7.59 -52.49 -0.40 0.93 16 33 H 0.17 2.36 7.19 -52.48 -0.38 1.98 16 LS Contribution 315.19 15.07 4.75 4.75 Total: -1.00 -28.78 315.19 -3.92 -32.70 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -0.89 Total: 6.54 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: -3.00 Total: 7.17 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 0.77 Total: -33.73 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -1.27 Total: -20.01 kcal Atomic # 9 Polarization: -11.47 SS G_CDS: 0.11 Total: -11.36 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -4.38 Total: 13.94 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.78 -3.92 -32.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001558441796.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.095 kcal (2) G-P(sol) polarization free energy of solvation -28.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds