Wall clock time and date at job start Tue Mar 31 2020 17:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00469 * 2 1 4 4 H 1.48502 * 109.47192 * 95.08868 * 3 2 1 5 5 H 1.48501 * 109.47649 * 215.08910 * 3 2 1 6 6 H 1.48498 * 109.47083 * 335.09260 * 3 2 1 7 7 C 1.37888 * 119.99650 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99610 * 355.10578 * 7 2 1 9 9 C 1.50694 * 119.99802 * 175.10943 * 7 2 1 10 10 H 1.09004 * 109.47105 * 305.23315 * 9 7 2 11 11 N 1.46500 * 109.47630 * 65.23416 * 9 7 2 12 12 C 1.34775 * 120.00150 * 204.99938 * 11 9 7 13 13 O 1.21551 * 120.00137 * 0.02562 * 12 11 9 14 14 C 1.47861 * 119.99879 * 179.97438 * 12 11 9 15 15 C 1.39521 * 120.11598 * 359.72914 * 14 12 11 16 16 C 1.38455 * 119.78737 * 179.70060 * 15 14 12 17 17 O 1.35919 * 119.98217 * 180.29734 * 16 15 14 18 18 C 1.38854 * 120.03488 * 0.59192 * 16 15 14 19 19 C 1.38244 * 120.23577 * 359.68101 * 18 16 15 20 20 N 1.48015 * 119.89641 * 180.02562 * 19 18 16 21 21 O 1.21798 * 120.00203 * 179.97438 * 20 19 18 22 22 O 1.21801 * 119.99838 * 359.97438 * 20 19 18 23 23 C 1.38004 * 120.20539 * 0.02562 * 19 18 16 24 24 C 1.52997 * 109.47051 * 185.23694 * 9 7 2 25 25 F 1.39904 * 109.47185 * 54.98019 * 24 9 7 26 26 F 1.39898 * 109.47285 * 174.98157 * 24 9 7 27 27 F 1.39896 * 109.47138 * 294.98309 * 24 9 7 28 28 H 0.96996 * 119.99743 * 0.02562 * 1 2 3 29 29 H 0.96993 * 119.99607 * 24.99827 * 11 9 7 30 30 H 1.07997 * 120.10587 * 359.97438 * 15 14 12 31 31 H 0.96699 * 113.99782 * 270.29424 * 17 16 15 32 32 H 1.07995 * 119.88237 * 179.70137 * 18 16 15 33 33 H 1.08004 * 120.01742 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.6043 1.9842 1.3946 5 1 3.4889 1.4735 -0.8048 6 1 1.3971 2.6813 -0.5896 7 6 2.0045 -1.1942 -0.0005 8 1 1.4673 -2.1277 0.0788 9 6 3.5073 -1.1966 -0.1118 10 1 3.8068 -0.6402 -1.0000 11 7 4.0861 -0.5663 1.0773 12 6 5.3076 -0.0004 1.0131 13 8 5.9288 -0.0124 -0.0316 14 6 5.8915 0.6362 2.2131 15 6 5.1777 0.6572 3.4118 16 6 5.7336 1.2496 4.5330 17 8 5.0443 1.2671 5.7043 18 6 6.9923 1.8313 4.4599 19 6 7.6982 1.8162 3.2713 20 7 9.0396 2.4380 3.2020 21 8 9.6634 2.4253 2.1560 22 8 9.5196 2.9624 4.1910 23 6 7.1561 1.2231 2.1493 24 6 4.0084 -2.6381 -0.2200 25 9 3.3685 -3.2752 -1.2887 26 9 5.3903 -2.6363 -0.4380 27 9 3.7245 -3.3209 0.9675 28 1 -0.4849 0.8400 -0.0004 29 1 3.5903 -0.5564 1.9109 30 1 4.1967 0.2090 3.4660 31 1 4.4760 2.0416 5.8146 32 1 7.4215 2.2970 5.3347 33 1 7.7104 1.2126 1.2225 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001558441796.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:55 Heat of formation + Delta-G solvation = -224.340979 kcal Electronic energy + Delta-G solvation = -29189.079105 eV Core-core repulsion = 24188.967103 eV Total energy + Delta-G solvation = -5000.112002 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.065 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.94093 -48.45173 -48.41932 -43.43917 -41.74008 -40.34365 -38.00038 -37.76930 -36.87260 -34.67115 -33.55353 -31.58464 -30.88920 -27.85156 -27.01130 -25.70737 -23.76702 -23.22259 -22.12044 -20.93531 -20.05185 -19.86036 -19.42151 -18.88933 -18.77902 -18.56539 -18.45510 -18.27183 -17.73851 -17.31920 -16.58099 -16.27338 -16.00990 -15.84881 -15.35171 -15.32577 -14.88617 -14.88088 -14.68504 -14.61948 -14.55021 -14.01278 -13.97931 -13.65248 -13.51084 -12.98275 -12.85367 -12.65172 -12.63170 -12.40371 -12.23073 -12.16220 -11.91743 -11.43013 -11.02075 -10.95546 -10.44079 -10.31321 -8.56190 -6.75943 -1.47682 -0.76632 -0.00619 0.09569 1.17382 1.23592 1.36564 1.42218 1.70576 1.96738 2.13218 2.21608 2.64167 2.83485 3.04142 3.15327 3.28995 3.31210 3.44128 3.47288 3.54906 3.85870 3.91697 4.33726 4.44591 4.57247 4.63151 4.78073 4.89227 5.11845 5.15556 5.82452 6.34141 6.34727 6.40889 6.57251 6.90347 6.95356 8.55866 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.013301 B = 0.004367 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.634116 B = 6410.110125 C = 7111.940158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.064 3.936 3 Si 0.920 3.080 4 H -0.233 1.233 5 H -0.270 1.270 6 H -0.288 1.288 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.212 3.788 10 H 0.083 0.917 11 N -0.705 5.705 12 C 0.543 3.457 13 O -0.552 6.552 14 C -0.120 4.120 15 C -0.055 4.055 16 C 0.133 3.867 17 O -0.480 6.480 18 C -0.049 4.049 19 C -0.041 4.041 20 N 0.031 4.969 21 O -0.193 6.193 22 O -0.137 6.137 23 C -0.015 4.015 24 C 0.446 3.554 25 F -0.185 7.185 26 F -0.191 7.191 27 F -0.183 7.183 28 H 0.281 0.719 29 H 0.414 0.586 30 H 0.172 0.828 31 H 0.426 0.574 32 H 0.189 0.811 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.267 5.378 12.118 15.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.744 3.256 4 H -0.156 1.156 5 H -0.195 1.195 6 H -0.215 1.215 7 C -0.579 4.579 8 H 0.085 0.915 9 C 0.108 3.892 10 H 0.101 0.899 11 N -0.359 5.359 12 C 0.331 3.669 13 O -0.430 6.430 14 C -0.124 4.124 15 C -0.075 4.075 16 C 0.087 3.913 17 O -0.295 6.295 18 C -0.068 4.068 19 C -0.124 4.124 20 N 0.549 4.451 21 O -0.401 6.401 22 O -0.360 6.360 23 C -0.035 4.035 24 C 0.390 3.610 25 F -0.167 7.167 26 F -0.172 7.172 27 F -0.165 7.165 28 H 0.091 0.909 29 H 0.253 0.747 30 H 0.190 0.810 31 H 0.288 0.712 32 H 0.206 0.794 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 8.137 4.590 11.452 14.779 hybrid contribution 0.048 0.797 -0.256 0.838 sum 8.185 5.387 11.196 14.878 Atomic orbital electron populations 1.69937 1.07803 1.29484 1.46030 1.25476 0.95155 1.01803 0.91832 0.86172 0.78843 0.79331 0.81291 1.15642 1.19505 1.21490 1.20699 0.86804 0.95614 1.54782 0.91471 1.20018 0.94971 0.84992 0.89251 0.89902 1.47195 1.17060 1.56190 1.15494 1.18631 0.81709 0.78550 0.88056 1.90797 1.61139 1.59478 1.31626 1.19591 0.95123 1.03137 0.94565 1.22411 1.00872 0.94185 0.89986 1.17677 0.90586 0.97015 0.86031 1.84875 1.61577 1.50685 1.32384 1.21694 0.93836 0.94612 0.96663 1.20674 0.85606 1.08294 0.97819 1.43667 1.02664 0.98607 1.00152 1.94610 1.61314 1.64746 1.19385 1.94501 1.71285 1.43660 1.26569 1.20986 0.93759 0.90343 0.98424 1.21260 0.74483 0.91921 0.73324 1.93117 1.81995 1.84209 1.57343 1.93162 1.32281 1.97133 1.94654 1.93097 1.93337 1.82533 1.47530 0.90941 0.74656 0.81037 0.71197 0.79350 0.82647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -46.72 13.96 21.45 0.30 -46.42 16 2 C 0.06 3.07 5.47 84.66 0.46 3.54 16 3 Si 0.92 36.89 25.79 68.60 1.77 38.66 16 4 H -0.23 -7.82 7.11 99.48 0.71 -7.11 16 5 H -0.27 -11.49 6.57 99.48 0.65 -10.83 16 6 H -0.29 -11.81 7.11 99.48 0.71 -11.11 16 7 C -0.54 -25.85 8.65 25.60 0.22 -25.63 16 8 H 0.07 3.59 7.95 -2.91 -0.02 3.57 16 9 C 0.21 8.92 1.42 44.24 0.06 8.98 16 10 H 0.08 3.76 6.52 -2.38 -0.02 3.74 16 11 N -0.70 -24.79 2.84 -448.97 -1.27 -26.07 16 12 C 0.54 18.71 6.97 86.79 0.61 19.31 16 13 O -0.55 -22.76 14.91 -3.88 -0.06 -22.81 16 14 C -0.12 -3.11 5.87 -20.10 -0.12 -3.23 16 15 C -0.06 -1.04 9.48 22.63 0.21 -0.83 16 16 C 0.13 1.93 6.70 22.47 0.15 2.08 16 17 O -0.48 -4.79 13.50 -92.63 -1.25 -6.04 16 18 C -0.05 -0.76 9.49 22.42 0.21 -0.54 16 19 C -0.04 -0.90 6.84 36.32 0.25 -0.65 16 20 N 0.03 0.79 4.45 -46.59 -0.21 0.58 16 21 O -0.19 -5.71 18.44 18.89 0.35 -5.36 16 22 O -0.14 -3.33 18.44 18.88 0.35 -2.98 16 23 C -0.02 -0.38 9.10 22.53 0.20 -0.18 16 24 C 0.45 18.27 2.79 71.98 0.20 18.47 16 25 F -0.19 -7.87 16.86 44.97 0.76 -7.11 16 26 F -0.19 -7.77 15.83 44.97 0.71 -7.06 16 27 F -0.18 -7.17 16.97 44.97 0.76 -6.41 16 28 H 0.28 13.55 8.31 -92.71 -0.77 12.78 16 29 H 0.41 12.36 6.61 -92.71 -0.61 11.74 16 30 H 0.17 2.72 6.40 -2.91 -0.02 2.70 16 31 H 0.43 0.01 9.06 -74.06 -0.67 -0.66 16 32 H 0.19 2.02 7.59 -2.91 -0.02 2.00 16 33 H 0.16 4.41 7.19 -2.91 -0.02 4.38 16 Total: -1.00 -63.08 315.19 4.59 -58.49 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -0.09 Total: 11.21 kcal Atomic # 6 Polarization: 18.85 SS G_CDS: 2.47 Total: 21.32 kcal Atomic # 7 Polarization: -70.73 SS G_CDS: -1.18 Total: -71.91 kcal Atomic # 8 Polarization: -36.59 SS G_CDS: -0.61 Total: -37.20 kcal Atomic # 9 Polarization: -22.81 SS G_CDS: 2.23 Total: -20.58 kcal Atomic # 14 Polarization: 36.89 SS G_CDS: 1.77 Total: 38.66 kcal Total: -63.08 4.59 -58.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001558441796.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.850 kcal (2) G-P(sol) polarization free energy of solvation -63.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds