Wall clock time and date at job start Tue Mar 31 2020 17:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00370 * 2 1 4 4 H 1.48494 * 109.47169 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47106 * 300.00114 * 3 2 1 6 6 H 1.48497 * 109.46726 * 59.99782 * 3 2 1 7 7 C 1.37879 * 119.99757 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00159 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99905 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.47044 * 299.99771 * 9 7 2 11 11 N 1.46506 * 109.47002 * 180.02562 * 9 7 2 12 12 C 1.34773 * 119.99970 * 154.99665 * 11 9 7 13 13 O 1.21552 * 120.00237 * 359.72662 * 12 11 9 14 14 C 1.47866 * 120.00028 * 179.97438 * 12 11 9 15 15 C 1.39529 * 120.11527 * 359.45221 * 14 12 11 16 16 C 1.38453 * 119.78916 * 179.69939 * 15 14 12 17 17 O 1.35913 * 119.98272 * 180.31999 * 16 15 14 18 18 C 1.38852 * 120.03241 * 0.59528 * 16 15 14 19 19 C 1.38244 * 120.23769 * 359.68001 * 18 16 15 20 20 N 1.48019 * 119.89372 * 180.02562 * 19 18 16 21 21 O 1.21796 * 119.99750 * 179.97438 * 20 19 18 22 22 O 1.21802 * 119.99788 * 359.97438 * 20 19 18 23 23 C 1.38000 * 120.20588 * 0.02562 * 19 18 16 24 24 C 1.52990 * 109.47334 * 60.00204 * 9 7 2 25 25 F 1.39906 * 109.47154 * 179.97438 * 24 9 7 26 26 F 1.39895 * 109.47135 * 299.99599 * 24 9 7 27 27 F 1.39898 * 109.47136 * 60.00047 * 24 9 7 28 28 H 0.97001 * 119.99929 * 0.02562 * 1 2 3 29 29 H 0.97004 * 120.00008 * 334.99383 * 11 9 7 30 30 H 1.08005 * 120.10210 * 359.97438 * 15 14 12 31 31 H 0.96698 * 113.99812 * 270.28123 * 17 16 15 32 32 H 1.07997 * 119.87919 * 179.70007 * 18 16 15 33 33 H 1.08005 * 120.01432 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4991 -0.0017 10 1 0.6239 -2.5574 0.8880 11 7 2.2029 -3.6127 -0.0015 12 6 1.8364 -4.8125 0.4910 13 8 0.7176 -4.9693 0.9396 14 6 2.7970 -5.9366 0.4908 15 6 4.0798 -5.7611 -0.0292 16 6 4.9760 -6.8164 -0.0204 17 8 6.2287 -6.6480 -0.5200 18 6 4.5936 -8.0485 0.4933 19 6 3.3211 -8.2254 1.0036 20 7 2.9217 -9.5418 1.5499 21 8 1.8012 -9.6997 2.0004 22 8 3.7137 -10.4672 1.5489 23 6 2.4219 -7.1785 1.0053 24 6 0.3718 -2.5794 -1.2513 25 9 -0.3273 -3.7912 -1.2526 26 9 -0.5373 -1.5161 -1.2509 27 9 1.1766 -2.5046 -2.3932 28 1 -0.4850 0.8401 -0.0004 29 1 3.0970 -3.4865 -0.3558 30 1 4.3742 -4.8037 -0.4333 31 1 6.3053 -6.8437 -1.4638 32 1 5.2931 -8.8713 0.4946 33 1 1.4287 -7.3200 1.4051 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001558441803.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:00 Heat of formation + Delta-G solvation = -185.070206 kcal Electronic energy + Delta-G solvation = -28938.009480 eV Core-core repulsion = 23939.600386 eV Total energy + Delta-G solvation = -4998.409093 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.065 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.52475 -46.18118 -45.77901 -42.40030 -40.61194 -39.07185 -37.11164 -36.73464 -35.02229 -33.11578 -32.20695 -30.67426 -28.67402 -26.83221 -24.85173 -24.40510 -22.83613 -21.82208 -20.68757 -19.70688 -18.90623 -17.94256 -17.73784 -17.67222 -17.20223 -16.97178 -16.83418 -16.57515 -16.41547 -15.49998 -15.39925 -15.11195 -14.62864 -14.31908 -13.43061 -13.21582 -13.09290 -12.93022 -12.75608 -12.58087 -12.52110 -12.40843 -12.14088 -11.97661 -11.84984 -11.69241 -11.34404 -11.31933 -11.30725 -11.01584 -10.98534 -10.56366 -9.99371 -9.84264 -9.79275 -9.50981 -8.90174 -8.57916 -6.38982 -4.64537 -0.49035 0.21863 0.97644 1.09569 2.41415 3.08284 3.14091 3.18302 3.25143 3.33979 3.44899 4.06259 4.13138 4.21832 4.35537 4.41514 4.44556 4.70399 4.78113 4.93725 5.27644 5.45568 5.52411 5.62715 5.67713 5.70592 6.00567 6.13968 6.67726 6.80668 6.96695 7.24033 7.43479 7.46651 7.92376 8.27908 8.46178 9.04237 10.52681 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.017838 B = 0.003426 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.339489 B = 8171.803104 C = 8921.099069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.066 3.934 3 Si 0.917 3.083 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.556 4.556 8 H 0.079 0.921 9 C 0.244 3.756 10 H 0.090 0.910 11 N -0.699 5.699 12 C 0.548 3.452 13 O -0.515 6.515 14 C -0.099 4.099 15 C -0.063 4.063 16 C 0.109 3.891 17 O -0.482 6.482 18 C -0.070 4.070 19 C -0.035 4.035 20 N 0.029 4.971 21 O -0.147 6.147 22 O -0.159 6.159 23 C -0.009 4.009 24 C 0.417 3.583 25 F -0.217 7.217 26 F -0.134 7.134 27 F -0.209 7.209 28 H 0.270 0.730 29 H 0.399 0.601 30 H 0.157 0.843 31 H 0.400 0.600 32 H 0.162 0.838 33 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.980 -10.254 -2.437 14.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.143 4.143 3 Si 0.743 3.257 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.593 4.593 8 H 0.097 0.903 9 C 0.139 3.861 10 H 0.108 0.892 11 N -0.349 5.349 12 C 0.332 3.668 13 O -0.391 6.391 14 C -0.103 4.103 15 C -0.083 4.083 16 C 0.063 3.937 17 O -0.293 6.293 18 C -0.090 4.090 19 C -0.118 4.118 20 N 0.550 4.450 21 O -0.365 6.365 22 O -0.375 6.375 23 C -0.029 4.029 24 C 0.361 3.639 25 F -0.199 7.199 26 F -0.115 7.115 27 F -0.191 7.191 28 H 0.081 0.919 29 H 0.234 0.766 30 H 0.174 0.826 31 H 0.257 0.743 32 H 0.180 0.820 33 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 9.296 -9.404 -1.839 13.350 hybrid contribution 0.543 0.412 -0.877 1.111 sum 9.839 -8.992 -2.716 13.602 Atomic orbital electron populations 1.70392 1.05901 1.27576 1.43073 1.25083 0.95182 1.00231 0.93829 0.86125 0.79748 0.81753 0.78041 1.19358 1.20460 1.20431 1.20871 0.93820 0.87857 1.56732 0.90259 1.19871 0.88626 0.85448 0.92169 0.89214 1.46016 1.17421 1.10200 1.61243 1.17895 0.86800 0.82578 0.79487 1.90844 1.20168 1.82627 1.45491 1.20015 0.94629 0.94563 1.01111 1.22208 0.91304 1.00285 0.94461 1.17869 0.85417 0.90900 0.99470 1.84907 1.23873 1.90378 1.30163 1.21385 0.93891 0.98795 0.94892 1.20717 0.96783 0.84867 1.09450 1.43499 1.00530 1.02396 0.98567 1.94594 1.06231 1.89082 1.46627 1.94533 1.48741 1.33354 1.60857 1.21161 1.00566 0.89133 0.92053 1.23099 0.80907 0.72936 0.86979 1.93079 1.81517 1.48364 1.96968 1.93417 1.68268 1.53656 1.96163 1.92993 1.74358 1.96184 1.55516 0.91936 0.76593 0.82570 0.74261 0.82007 0.81151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.76 9.50 55.43 0.53 -21.24 16 2 C 0.07 1.62 5.20 -17.82 -0.09 1.53 16 3 Si 0.92 18.99 29.54 -169.99 -5.02 13.97 16 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.56 -13.12 8.46 -34.44 -0.29 -13.42 16 8 H 0.08 1.75 7.74 -52.49 -0.41 1.34 16 9 C 0.24 5.57 2.21 -69.09 -0.15 5.42 16 10 H 0.09 2.30 7.57 -51.93 -0.39 1.91 16 11 N -0.70 -12.61 4.94 -55.87 -0.28 -12.88 16 12 C 0.55 9.62 7.30 -12.32 -0.09 9.53 16 13 O -0.52 -10.97 14.93 5.32 0.08 -10.89 16 14 C -0.10 -1.30 5.87 -104.98 -0.62 -1.91 16 15 C -0.06 -0.63 9.48 -39.02 -0.37 -1.00 16 16 C 0.11 0.94 6.70 -39.28 -0.26 0.68 16 17 O -0.48 -3.28 13.50 -19.47 -0.26 -3.54 16 18 C -0.07 -0.65 9.49 -39.35 -0.37 -1.02 16 19 C -0.04 -0.41 6.84 -80.03 -0.55 -0.96 16 20 N 0.03 0.39 4.45 33.92 0.15 0.54 16 21 O -0.15 -2.15 18.44 -29.46 -0.54 -2.69 16 22 O -0.16 -2.12 18.44 -29.46 -0.54 -2.66 16 23 C -0.01 -0.12 9.10 -39.18 -0.36 -0.48 16 24 C 0.42 9.97 2.81 37.15 0.10 10.08 16 25 F -0.22 -5.16 15.69 2.25 0.04 -5.12 16 26 F -0.13 -3.52 12.91 2.25 0.03 -3.49 16 27 F -0.21 -4.75 16.94 2.25 0.04 -4.71 16 28 H 0.27 6.65 8.31 -40.82 -0.34 6.32 16 29 H 0.40 5.88 6.57 -40.82 -0.27 5.61 16 30 H 0.16 1.29 6.40 -52.48 -0.34 0.95 16 31 H 0.40 0.74 9.06 45.56 0.41 1.15 16 32 H 0.16 1.24 7.59 -52.49 -0.40 0.84 16 33 H 0.17 2.33 7.19 -52.48 -0.38 1.95 16 LS Contribution 314.49 15.07 4.74 4.74 Total: -1.00 -30.26 314.49 -5.00 -35.26 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -0.90 Total: 4.27 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: -3.05 Total: 8.45 kcal Atomic # 7 Polarization: -33.98 SS G_CDS: 0.40 Total: -33.58 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -1.27 Total: -19.79 kcal Atomic # 9 Polarization: -13.43 SS G_CDS: 0.10 Total: -13.32 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.02 Total: 13.97 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.26 -5.00 -35.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001558441803.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.809 kcal (2) G-P(sol) polarization free energy of solvation -30.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds