Wall clock time and date at job start Tue Mar 31 2020 17:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00370 * 2 1 4 4 H 1.48494 * 109.47169 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47106 * 300.00114 * 3 2 1 6 6 H 1.48497 * 109.46726 * 59.99782 * 3 2 1 7 7 C 1.37879 * 119.99757 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00159 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99905 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.47044 * 299.99771 * 9 7 2 11 11 N 1.46506 * 109.47002 * 180.02562 * 9 7 2 12 12 C 1.34773 * 119.99970 * 154.99665 * 11 9 7 13 13 O 1.21552 * 120.00237 * 359.72662 * 12 11 9 14 14 C 1.47866 * 120.00028 * 179.97438 * 12 11 9 15 15 C 1.39529 * 120.11527 * 359.45221 * 14 12 11 16 16 C 1.38453 * 119.78916 * 179.69939 * 15 14 12 17 17 O 1.35913 * 119.98272 * 180.31999 * 16 15 14 18 18 C 1.38852 * 120.03241 * 0.59528 * 16 15 14 19 19 C 1.38244 * 120.23769 * 359.68001 * 18 16 15 20 20 N 1.48019 * 119.89372 * 180.02562 * 19 18 16 21 21 O 1.21796 * 119.99750 * 179.97438 * 20 19 18 22 22 O 1.21802 * 119.99788 * 359.97438 * 20 19 18 23 23 C 1.38000 * 120.20588 * 0.02562 * 19 18 16 24 24 C 1.52990 * 109.47334 * 60.00204 * 9 7 2 25 25 F 1.39906 * 109.47154 * 179.97438 * 24 9 7 26 26 F 1.39895 * 109.47135 * 299.99599 * 24 9 7 27 27 F 1.39898 * 109.47136 * 60.00047 * 24 9 7 28 28 H 0.97001 * 119.99929 * 0.02562 * 1 2 3 29 29 H 0.97004 * 120.00008 * 334.99383 * 11 9 7 30 30 H 1.08005 * 120.10210 * 359.97438 * 15 14 12 31 31 H 0.96698 * 113.99812 * 270.28123 * 17 16 15 32 32 H 1.07997 * 119.87919 * 179.70007 * 18 16 15 33 33 H 1.08005 * 120.01432 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4991 -0.0017 10 1 0.6239 -2.5574 0.8880 11 7 2.2029 -3.6127 -0.0015 12 6 1.8364 -4.8125 0.4910 13 8 0.7176 -4.9693 0.9396 14 6 2.7970 -5.9366 0.4908 15 6 4.0798 -5.7611 -0.0292 16 6 4.9760 -6.8164 -0.0204 17 8 6.2287 -6.6480 -0.5200 18 6 4.5936 -8.0485 0.4933 19 6 3.3211 -8.2254 1.0036 20 7 2.9217 -9.5418 1.5499 21 8 1.8012 -9.6997 2.0004 22 8 3.7137 -10.4672 1.5489 23 6 2.4219 -7.1785 1.0053 24 6 0.3718 -2.5794 -1.2513 25 9 -0.3273 -3.7912 -1.2526 26 9 -0.5373 -1.5161 -1.2509 27 9 1.1766 -2.5046 -2.3932 28 1 -0.4850 0.8401 -0.0004 29 1 3.0970 -3.4865 -0.3558 30 1 4.3742 -4.8037 -0.4333 31 1 6.3053 -6.8437 -1.4638 32 1 5.2931 -8.8713 0.4946 33 1 1.4287 -7.3200 1.4051 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001558441803.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:00 Heat of formation + Delta-G solvation = -206.141429 kcal Electronic energy + Delta-G solvation = -28938.923197 eV Core-core repulsion = 23939.600386 eV Total energy + Delta-G solvation = -4999.322810 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.065 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.45539 -48.08904 -47.76234 -43.41110 -41.65330 -40.23827 -37.94348 -37.73726 -36.67553 -34.71308 -33.39678 -31.52077 -30.34006 -27.81820 -26.66453 -25.66763 -23.73254 -23.34712 -22.03366 -20.93543 -19.92427 -19.25585 -18.98582 -18.76907 -18.70616 -18.58849 -18.39927 -17.77950 -17.64561 -16.93153 -16.66373 -16.20952 -16.13627 -15.62879 -15.07716 -15.00910 -14.58208 -14.48887 -14.33498 -14.11003 -13.99054 -13.91113 -13.85371 -13.45073 -13.10269 -12.83239 -12.79356 -12.68631 -12.61566 -12.38524 -12.26882 -12.12585 -11.59900 -11.24870 -10.92260 -10.72755 -10.35854 -10.20825 -8.24017 -6.55266 -1.43975 -0.71027 0.03392 0.13448 1.36488 1.46876 1.48613 1.60443 1.86680 2.18469 2.36275 2.49499 2.69087 2.92266 3.14348 3.33893 3.50975 3.54129 3.71774 3.80272 3.89701 3.97389 4.14290 4.39746 4.61949 4.67552 4.79592 4.87578 5.15618 5.21684 5.47045 5.61414 6.36205 6.44285 6.51049 6.62969 7.02350 7.18938 8.68848 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.017838 B = 0.003426 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.339489 B = 8171.803104 C = 8921.099069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.016 3.984 3 Si 0.982 3.018 4 H -0.252 1.252 5 H -0.283 1.283 6 H -0.281 1.281 7 C -0.560 4.560 8 H 0.098 0.902 9 C 0.250 3.750 10 H 0.053 0.947 11 N -0.691 5.691 12 C 0.548 3.452 13 O -0.562 6.562 14 C -0.111 4.111 15 C -0.048 4.048 16 C 0.135 3.865 17 O -0.480 6.480 18 C -0.050 4.050 19 C -0.041 4.041 20 N 0.030 4.970 21 O -0.199 6.199 22 O -0.134 6.134 23 C -0.018 4.018 24 C 0.413 3.587 25 F -0.220 7.220 26 F -0.150 7.150 27 F -0.200 7.200 28 H 0.269 0.731 29 H 0.416 0.584 30 H 0.178 0.822 31 H 0.426 0.574 32 H 0.188 0.812 33 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.901 -10.436 -3.476 17.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.189 4.189 3 Si 0.806 3.194 4 H -0.175 1.175 5 H -0.209 1.209 6 H -0.207 1.207 7 C -0.597 4.597 8 H 0.116 0.884 9 C 0.143 3.857 10 H 0.070 0.930 11 N -0.342 5.342 12 C 0.335 3.665 13 O -0.442 6.442 14 C -0.115 4.115 15 C -0.067 4.067 16 C 0.088 3.912 17 O -0.295 6.295 18 C -0.070 4.070 19 C -0.124 4.124 20 N 0.548 4.452 21 O -0.405 6.405 22 O -0.359 6.359 23 C -0.038 4.038 24 C 0.357 3.643 25 F -0.202 7.202 26 F -0.131 7.131 27 F -0.182 7.182 28 H 0.079 0.921 29 H 0.255 0.745 30 H 0.195 0.805 31 H 0.289 0.711 32 H 0.205 0.795 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 13.173 -9.587 -2.885 16.546 hybrid contribution -0.504 0.370 -0.625 0.884 sum 12.669 -9.217 -3.510 16.055 Atomic orbital electron populations 1.70527 1.07549 1.28202 1.44484 1.25981 0.95839 1.03699 0.93422 0.85119 0.79328 0.77475 0.77477 1.17505 1.20852 1.20651 1.21246 0.94728 0.87910 1.55797 0.88371 1.19446 0.88910 0.87169 0.90166 0.92962 1.45771 1.17466 1.09399 1.61611 1.18485 0.86942 0.83145 0.77933 1.90819 1.22569 1.83428 1.47355 1.19444 0.95196 0.92797 1.04058 1.22376 0.89785 1.01717 0.92815 1.17653 0.85603 0.89739 0.98170 1.84880 1.21945 1.90195 1.32473 1.21701 0.92748 0.99861 0.92670 1.20657 0.97628 0.83594 1.10510 1.43708 1.00269 1.02933 0.98272 1.94618 1.07068 1.89682 1.49148 1.94491 1.48247 1.33805 1.59345 1.20960 1.00275 0.89812 0.92752 1.23275 0.80879 0.72427 0.87708 1.93072 1.81670 1.48390 1.97021 1.93386 1.68939 1.54489 1.96297 1.92993 1.73979 1.96134 1.55098 0.92130 0.74478 0.80455 0.71143 0.79464 0.83232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -46.35 9.50 21.45 0.20 -46.14 16 2 C 0.02 0.79 5.20 84.66 0.44 1.23 16 3 Si 0.98 38.16 29.54 68.60 2.03 40.19 16 4 H -0.25 -8.98 7.11 99.48 0.71 -8.27 16 5 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16 6 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 7 C -0.56 -26.04 8.46 25.60 0.22 -25.83 16 8 H 0.10 4.09 7.74 -2.91 -0.02 4.06 16 9 C 0.25 11.58 2.21 44.24 0.10 11.68 16 10 H 0.05 2.83 7.57 -2.39 -0.02 2.81 16 11 N -0.69 -24.61 4.94 -448.97 -2.22 -26.83 16 12 C 0.55 19.50 7.30 86.79 0.63 20.13 16 13 O -0.56 -25.23 14.93 -3.88 -0.06 -25.29 16 14 C -0.11 -2.80 5.87 -20.10 -0.12 -2.92 16 15 C -0.05 -0.79 9.48 22.63 0.21 -0.58 16 16 C 0.13 1.70 6.70 22.47 0.15 1.85 16 17 O -0.48 -3.76 13.50 -92.57 -1.25 -5.01 16 18 C -0.05 -0.74 9.49 22.42 0.21 -0.53 16 19 C -0.04 -0.90 6.84 36.32 0.25 -0.65 16 20 N 0.03 0.79 4.45 -46.59 -0.21 0.58 16 21 O -0.20 -6.07 18.44 18.89 0.35 -5.73 16 22 O -0.13 -3.30 18.44 18.88 0.35 -2.95 16 23 C -0.02 -0.46 9.10 22.53 0.20 -0.26 16 24 C 0.41 20.09 2.81 71.98 0.20 20.29 16 25 F -0.22 -10.72 15.69 44.97 0.71 -10.01 16 26 F -0.15 -8.09 12.91 44.97 0.58 -7.51 16 27 F -0.20 -9.00 16.94 44.97 0.76 -8.24 16 28 H 0.27 13.56 8.31 -92.71 -0.77 12.79 16 29 H 0.42 11.41 6.57 -92.71 -0.61 10.80 16 30 H 0.18 2.15 6.40 -2.91 -0.02 2.13 16 31 H 0.43 -1.02 9.06 -74.06 -0.67 -1.70 16 32 H 0.19 1.88 7.59 -2.91 -0.02 1.85 16 33 H 0.15 4.47 7.19 -2.91 -0.02 4.44 16 Total: -1.00 -67.87 314.49 3.71 -64.16 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -0.03 Total: 8.34 kcal Atomic # 6 Polarization: 21.93 SS G_CDS: 2.50 Total: 24.44 kcal Atomic # 7 Polarization: -70.17 SS G_CDS: -2.22 Total: -72.39 kcal Atomic # 8 Polarization: -38.37 SS G_CDS: -0.61 Total: -38.98 kcal Atomic # 9 Polarization: -27.81 SS G_CDS: 2.05 Total: -25.76 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 2.03 Total: 40.19 kcal Total: -67.87 3.71 -64.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001558441803.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.983 kcal (2) G-P(sol) polarization free energy of solvation -67.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds