Wall clock time and date at job start Tue Mar 31 2020 17:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29519 * 1 3 3 Si 1.86790 * 119.99852 * 2 1 4 4 H 1.48500 * 109.47333 * 269.99469 * 3 2 1 5 5 H 1.48507 * 109.47292 * 29.99847 * 3 2 1 6 6 H 1.48506 * 109.47328 * 149.99700 * 3 2 1 7 7 C 1.46563 * 119.99964 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00124 * 189.10523 * 7 2 1 9 9 C 1.39688 * 119.99863 * 9.10917 * 7 2 1 10 10 C 1.44615 * 123.87100 * 22.21550 * 9 7 2 11 11 C 1.32781 * 113.30664 * 180.27863 * 10 9 7 12 12 S 1.75371 * 111.28646 * 359.74054 * 11 10 9 13 13 C 1.39965 * 123.86717 * 202.00216 * 9 7 2 14 14 C 1.47559 * 124.79242 * 359.97438 * 13 9 7 15 15 O 1.21557 * 119.99874 * 359.72890 * 14 13 9 16 16 N 1.34775 * 120.00249 * 179.72198 * 14 13 9 17 17 N 1.40098 * 120.00088 * 180.02562 * 16 14 13 18 18 C 1.39008 * 119.99820 * 180.02562 * 17 16 14 19 19 N 1.32427 * 119.70570 * 333.10560 * 18 17 16 20 20 C 1.31943 * 121.62135 * 180.02562 * 19 18 17 21 21 C 1.38062 * 120.85598 * 0.02562 * 20 19 18 22 22 C 1.38838 * 119.32888 * 0.02562 * 21 20 19 23 23 C 1.38338 * 118.50533 * 359.97438 * 22 21 20 24 24 N 1.48022 * 120.45103 * 180.27645 * 23 22 21 25 25 O 1.31694 * 119.99820 * 354.01664 * 24 23 22 26 26 O 1.31698 * 120.00097 * 174.01300 * 24 23 22 27 27 H 0.96996 * 119.99905 * 0.02562 * 1 2 3 28 28 H 1.07995 * 123.34994 * 359.97438 * 10 9 7 29 29 H 1.08000 * 124.35541 * 179.73678 * 11 10 9 30 30 H 0.97008 * 119.99750 * 0.02562 * 16 14 13 31 31 H 0.97001 * 120.00361 * 0.02562 * 17 16 14 32 32 H 1.08002 * 119.56822 * 179.97438 * 20 19 18 33 33 H 1.08003 * 120.33730 * 180.02562 * 21 20 19 34 34 H 1.08000 * 120.74932 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2952 0.0000 0.0000 3 14 2.2291 1.6177 0.0000 4 1 2.4767 2.0463 -1.4000 5 1 1.4265 2.6527 0.7000 6 1 3.5267 1.4402 0.7001 7 6 2.0280 -1.2693 0.0006 8 1 3.0978 -1.2751 0.1486 9 6 1.3427 -2.4715 -0.1904 10 6 0.0530 -2.5701 -0.8371 11 6 -0.4087 -3.8133 -0.9016 12 16 0.7153 -4.9482 -0.1775 13 6 1.8277 -3.7191 0.2184 14 6 3.1174 -3.9388 0.9009 15 8 3.8459 -2.9960 1.1415 16 7 3.4875 -5.1846 1.2577 17 7 4.7117 -5.3931 1.9062 18 6 5.0936 -6.6781 2.2736 19 7 4.1681 -7.5937 2.5161 20 6 4.4880 -8.8245 2.8679 21 6 5.8093 -9.2033 2.9968 22 6 6.8105 -8.2729 2.7524 23 6 6.4445 -6.9903 2.3854 24 7 7.4765 -5.9659 2.1087 25 8 8.7472 -6.2363 2.3246 26 8 7.1240 -4.7841 1.6467 27 1 -0.4850 0.8400 -0.0004 28 1 -0.4837 -1.7167 -1.2245 29 1 -1.3547 -4.0901 -1.3430 30 1 2.9061 -5.9371 1.0654 31 1 5.2928 -4.6407 2.0988 32 1 3.7060 -9.5447 3.0582 33 1 6.0617 -10.2132 3.2847 34 1 7.8515 -8.5444 2.8468 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001558950009.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:26 Heat of formation + Delta-G solvation = 96.410383 kcal Electronic energy + Delta-G solvation = -25064.679784 eV Core-core repulsion = 21095.378967 eV Total energy + Delta-G solvation = -3969.300817 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 334.057 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -41.14903 -38.67132 -38.51350 -36.42416 -35.48276 -34.25825 -33.31505 -33.12112 -32.26137 -29.72756 -28.75994 -26.82832 -26.07234 -23.56274 -23.15111 -22.11465 -20.67808 -19.30483 -18.90012 -18.52768 -18.26666 -17.35829 -17.01626 -16.23816 -16.03080 -15.68583 -15.39564 -15.26556 -14.65444 -14.18948 -13.90046 -13.84147 -13.80018 -13.23188 -12.60634 -12.39695 -12.07359 -11.80450 -11.54532 -11.35181 -11.27602 -11.12266 -11.04032 -10.68986 -10.65354 -10.56985 -10.25958 -10.21055 -9.75553 -9.64636 -9.39526 -8.77252 -7.75311 -7.51740 -7.29820 -7.26407 -4.59228 -0.72154 0.73123 0.91648 1.12926 2.04964 2.10500 2.84691 2.88695 2.95799 3.06892 3.12008 3.60701 3.64586 3.67837 3.76154 3.92555 4.18102 4.24690 4.35097 4.66307 4.99587 5.06160 5.26523 5.43217 5.61419 5.94722 6.03191 6.16661 6.46509 6.67825 6.86341 7.02101 7.12224 7.19884 7.33403 7.47678 7.73229 8.08266 8.13829 8.48299 8.59802 9.31118 9.54684 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.014689 B = 0.003486 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.792472 B = 8029.622330 C = 9721.496509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.744 5.744 2 C 0.066 3.934 3 Si 0.930 3.070 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.249 1.249 7 C -0.366 4.366 8 H 0.118 0.882 9 C 0.132 3.868 10 C -0.104 4.104 11 C -0.207 4.207 12 S -0.007 6.007 13 C -0.472 4.472 14 C 0.597 3.403 15 O -0.554 6.554 16 N -0.538 5.538 17 N -0.455 5.455 18 C 0.454 3.546 19 N -0.526 5.526 20 C 0.216 3.784 21 C -0.241 4.241 22 C 0.038 3.962 23 C -0.125 4.125 24 N 0.009 4.991 25 O -0.190 6.190 26 O -0.204 6.204 27 H 0.296 0.704 28 H 0.147 0.853 29 H 0.138 0.862 30 H 0.421 0.579 31 H 0.453 0.547 32 H 0.179 0.821 33 H 0.156 0.844 34 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.252 -13.778 3.707 14.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.365 5.365 2 C -0.164 4.164 3 Si 0.752 3.248 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.172 1.172 7 C -0.395 4.395 8 H 0.135 0.865 9 C 0.122 3.878 10 C -0.137 4.137 11 C -0.341 4.341 12 S 0.248 5.752 13 C -0.592 4.592 14 C 0.396 3.604 15 O -0.434 6.434 16 N -0.288 5.288 17 N -0.184 5.184 18 C 0.208 3.792 19 N -0.245 5.245 20 C 0.051 3.949 21 C -0.265 4.265 22 C 0.011 3.989 23 C -0.225 4.225 24 N 0.472 4.528 25 O -0.378 6.378 26 O -0.379 6.379 27 H 0.108 0.892 28 H 0.164 0.836 29 H 0.156 0.844 30 H 0.263 0.737 31 H 0.308 0.692 32 H 0.196 0.804 33 H 0.174 0.826 34 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 2.136 -14.273 3.946 14.962 hybrid contribution 1.176 2.093 -0.058 2.401 sum 3.313 -12.180 3.888 13.208 Atomic orbital electron populations 1.69074 1.09120 1.31556 1.26732 1.27918 0.94756 1.03182 0.90499 0.85909 0.81126 0.77648 0.80117 1.18445 1.19655 1.17163 1.21330 0.97357 0.87855 1.32994 0.86476 1.17808 0.89815 0.91484 0.88734 1.21797 0.96318 0.96058 0.99504 1.25043 1.03043 0.97295 1.08724 1.81503 1.14140 1.12796 1.66720 1.21594 1.03666 0.97660 1.36327 1.17422 0.85563 0.79313 0.78098 1.90642 1.54090 1.40355 1.58350 1.45514 1.11858 1.11498 1.59973 1.44602 1.14217 1.05520 1.54060 1.17952 0.85961 0.86819 0.88490 1.67784 1.33708 1.03089 1.19959 1.23097 0.96226 0.90662 0.84960 1.21921 0.92522 1.01771 1.10322 1.21343 1.02651 0.88251 0.86645 1.20654 0.85276 0.90880 1.25706 1.50152 1.03200 1.02648 0.96820 1.96231 0.96314 1.86786 1.58426 1.96194 1.86537 1.05622 1.49566 0.89152 0.83577 0.84405 0.73735 0.69152 0.80372 0.82589 0.81857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -16.81 10.89 55.99 0.61 -16.20 16 2 C 0.07 1.52 5.57 -15.17 -0.08 1.43 16 3 Si 0.93 17.60 29.65 -169.99 -5.04 12.56 16 4 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 5 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 6 H -0.25 -4.95 7.11 56.52 0.40 -4.54 16 7 C -0.37 -9.60 8.81 -35.69 -0.31 -9.91 16 8 H 0.12 3.25 6.04 -52.49 -0.32 2.93 16 9 C 0.13 3.43 5.72 -106.19 -0.61 2.82 16 10 C -0.10 -2.43 9.19 -38.94 -0.36 -2.79 16 11 C -0.21 -4.32 11.07 28.86 0.32 -4.00 16 12 S -0.01 -0.14 21.94 -107.50 -2.36 -2.50 16 13 C -0.47 -11.75 6.35 -35.14 -0.22 -11.98 16 14 C 0.60 14.74 7.93 -12.46 -0.10 14.65 16 15 O -0.55 -15.18 14.25 5.32 0.08 -15.10 16 16 N -0.54 -11.07 6.24 30.46 0.19 -10.88 16 17 N -0.46 -8.61 5.81 31.13 0.18 -8.43 16 18 C 0.45 6.96 7.47 -155.01 -1.16 5.81 16 19 N -0.53 -6.82 9.72 -12.44 -0.12 -6.94 16 20 C 0.22 1.72 11.17 -17.57 -0.20 1.53 16 21 C -0.24 -1.58 10.10 -39.42 -0.40 -1.97 16 22 C 0.04 0.35 9.69 -39.32 -0.38 -0.03 16 23 C -0.12 -1.73 6.92 -79.59 -0.55 -2.28 16 24 N 0.01 0.15 4.98 34.14 0.17 0.32 16 25 O -0.19 -3.14 19.24 -31.56 -0.61 -3.75 16 26 O -0.20 -4.05 16.54 -31.57 -0.52 -4.57 16 27 H 0.30 5.87 8.27 -40.82 -0.34 5.53 16 28 H 0.15 3.35 6.38 -52.49 -0.33 3.02 16 29 H 0.14 2.40 8.06 -52.49 -0.42 1.98 16 30 H 0.42 7.96 7.30 -182.59 -1.33 6.62 16 31 H 0.45 9.21 5.21 -182.60 -0.95 8.26 16 32 H 0.18 0.70 8.06 -52.49 -0.42 0.28 16 33 H 0.16 0.43 8.06 -52.48 -0.42 0.01 16 34 H 0.16 1.17 7.68 -52.49 -0.40 0.76 16 LS Contribution 325.63 15.07 4.91 4.91 Total: -1.00 -30.99 325.63 -10.31 -41.30 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -3.74 Total: 16.02 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -4.05 Total: -6.74 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: 1.03 Total: -42.13 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -1.05 Total: -23.42 kcal Atomic # 14 Polarization: 17.60 SS G_CDS: -5.04 Total: 12.56 kcal Atomic # 16 Polarization: -0.14 SS G_CDS: -2.36 Total: -2.50 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.99 -10.31 -41.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001558950009.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.711 kcal (2) G-P(sol) polarization free energy of solvation -30.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds