Wall clock time and date at job start Tue Mar 31 2020 18:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86799 * 119.99652 * 2 1 4 4 H 1.48502 * 109.47314 * 270.00138 * 3 2 1 5 5 H 1.48501 * 109.47460 * 30.00031 * 3 2 1 6 6 H 1.48500 * 109.47182 * 150.00438 * 3 2 1 7 7 C 1.40027 * 120.00584 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00538 * 170.19581 * 7 2 1 9 9 C 1.41549 * 119.99807 * 350.19841 * 7 2 1 10 10 C 1.41160 * 121.00121 * 151.72728 * 9 7 2 11 11 C 1.36586 * 119.13001 * 180.02562 * 10 9 7 12 12 N 1.32075 * 121.25876 * 359.75002 * 11 10 9 13 13 C 1.32490 * 122.22753 * 0.52364 * 12 11 10 14 14 N 1.39455 * 119.64979 * 179.75350 * 13 12 11 15 15 C 1.34775 * 119.99887 * 5.09036 * 14 13 12 16 16 O 1.21586 * 120.00206 * 354.95529 * 15 14 13 17 17 N 1.34782 * 120.00151 * 174.95411 * 15 14 13 18 18 N 1.40098 * 119.99922 * 359.97438 * 17 15 14 19 19 C 1.39107 * 119.99875 * 179.97438 * 18 17 15 20 20 C 1.39504 * 120.14250 * 180.02562 * 19 18 17 21 21 C 1.38527 * 117.91369 * 179.97438 * 20 19 18 22 22 C 1.38956 * 118.02610 * 359.97438 * 21 20 19 23 23 Cl 1.73595 * 120.00883 * 179.97438 * 22 21 20 24 24 N 1.31875 * 119.98497 * 0.02562 * 22 21 20 25 25 N 1.28349 * 122.26704 * 359.97438 * 24 22 21 26 26 C 1.38649 * 120.70515 * 359.47178 * 13 12 11 27 27 H 0.96998 * 120.00740 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.42998 * 0.02562 * 10 9 7 29 29 H 1.07994 * 119.37337 * 179.97438 * 11 10 9 30 30 H 0.96998 * 120.00354 * 185.09193 * 14 13 12 31 31 H 0.96998 * 120.00051 * 180.02562 * 17 15 14 32 32 H 0.96998 * 120.00026 * 0.02562 * 18 17 15 33 33 H 1.07999 * 121.03957 * 359.95395 * 20 19 18 34 34 H 1.08000 * 120.98340 * 179.72364 * 21 20 19 35 35 H 1.07996 * 120.66421 * 180.27240 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 2.4887 2.0465 -1.4001 5 1 1.4387 2.6527 0.7000 6 1 3.5389 1.4403 0.6999 7 6 2.0076 -1.2126 -0.0005 8 1 3.0758 -1.2194 -0.1598 9 6 1.3154 -2.4296 0.2076 10 6 1.7916 -3.6399 -0.3412 11 6 1.0931 -4.7920 -0.1167 12 7 -0.0124 -4.7934 0.6059 13 6 -0.5084 -3.6874 1.1407 14 7 -1.6827 -3.7501 1.8903 15 6 -2.2510 -4.9434 2.1540 16 8 -1.7928 -5.9568 1.6627 17 7 -3.3272 -5.0134 2.9623 18 7 -3.8549 -3.8458 3.5288 19 6 -4.9660 -3.9180 4.3627 20 6 -5.4943 -2.7572 4.9280 21 6 -6.6016 -2.8825 5.7508 22 6 -7.1178 -4.1553 5.9616 23 17 -8.5040 -4.3717 6.9839 24 7 -6.5537 -5.1989 5.3857 25 7 -5.5277 -5.0890 4.6224 26 6 0.1308 -2.4692 0.9680 27 1 -0.4851 0.8400 -0.0004 28 1 2.6963 -3.6546 -0.9308 29 1 1.4536 -5.7201 -0.5351 30 1 -2.0905 -2.9348 2.2219 31 1 -3.7360 -5.8723 3.1523 32 1 -3.4459 -2.9869 3.3391 33 1 -5.0534 -1.7912 4.7306 34 1 -7.0480 -2.0170 6.2178 35 1 -0.2717 -1.5688 1.4079 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001563140319.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:45 Heat of formation + Delta-G solvation = 117.561268 kcal Electronic energy + Delta-G solvation = -24399.065392 eV Core-core repulsion = 20460.930791 eV Total energy + Delta-G solvation = -3938.134601 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 334.069 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.44343 -40.13617 -38.29335 -37.25521 -36.59507 -34.51125 -33.90528 -33.70749 -32.57464 -30.62233 -29.42239 -28.55130 -26.10472 -25.21550 -24.09593 -22.55351 -22.06148 -20.32904 -19.11206 -19.10668 -17.70804 -17.49366 -17.47619 -16.26975 -15.92463 -15.50647 -15.27468 -15.15814 -14.69738 -14.34811 -14.30867 -13.97907 -13.77667 -13.35495 -12.98694 -12.69748 -12.57050 -12.00443 -11.88434 -11.78182 -11.53699 -11.27619 -11.01166 -10.73813 -10.44886 -10.27078 -10.08939 -10.03501 -9.92825 -9.86689 -9.50029 -8.07334 -7.96334 -7.88233 -7.19295 -6.87243 -4.72711 0.32281 0.54785 1.30954 1.68518 2.53636 2.70624 2.94786 2.97307 2.99406 3.07369 3.14082 3.56913 3.77751 3.79225 3.95697 4.17528 4.33846 4.59405 4.67388 5.12182 5.25382 5.42544 5.56135 5.82079 6.06470 6.35012 6.40657 6.67904 6.81201 6.98903 7.05394 7.12513 7.27271 7.33481 7.75054 7.94987 8.10596 8.30225 8.33609 8.59928 8.65716 8.81327 9.55616 10.00429 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.015890 B = 0.002390 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.663103 B =11714.496122 C =13398.862204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.076 3.924 3 Si 0.914 3.086 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.454 4.454 8 H 0.082 0.918 9 C 0.145 3.855 10 C -0.277 4.277 11 C 0.120 3.880 12 N -0.552 5.552 13 C 0.349 3.651 14 N -0.664 5.664 15 C 0.701 3.299 16 O -0.506 6.506 17 N -0.533 5.533 18 N -0.504 5.504 19 C 0.349 3.651 20 C -0.159 4.159 21 C -0.057 4.057 22 C 0.055 3.945 23 Cl -0.016 7.016 24 N -0.180 5.180 25 N -0.287 5.287 26 C -0.238 4.238 27 H 0.281 0.719 28 H 0.104 0.896 29 H 0.125 0.875 30 H 0.398 0.602 31 H 0.441 0.559 32 H 0.435 0.565 33 H 0.162 0.838 34 H 0.162 0.838 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.048 2.582 11.555 17.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.142 4.142 3 Si 0.738 3.262 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.486 4.486 8 H 0.101 0.899 9 C 0.136 3.864 10 C -0.301 4.301 11 C -0.033 4.033 12 N -0.271 5.271 13 C 0.123 3.877 14 N -0.314 5.314 15 C 0.400 3.600 16 O -0.372 6.372 17 N -0.293 5.293 18 N -0.235 5.235 19 C 0.106 3.894 20 C -0.194 4.194 21 C -0.086 4.086 22 C -0.122 4.122 23 Cl 0.012 6.988 24 N -0.024 5.024 25 N -0.142 5.142 26 C -0.264 4.264 27 H 0.092 0.908 28 H 0.122 0.878 29 H 0.143 0.857 30 H 0.233 0.767 31 H 0.287 0.713 32 H 0.280 0.720 33 H 0.180 0.820 34 H 0.180 0.820 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.221 -0.564 10.990 17.201 hybrid contribution 0.320 3.701 0.301 3.727 sum -12.901 3.137 11.291 17.429 Atomic orbital electron populations 1.69735 1.07575 1.29240 1.35759 1.25935 0.94889 1.01443 0.91924 0.86207 0.80464 0.80093 0.79387 1.19349 1.20070 1.18405 1.19575 0.95896 0.89928 1.43170 0.89944 1.17583 0.90107 0.92339 0.86352 1.21735 1.04535 0.94640 1.09170 1.21499 0.90605 0.96701 0.94532 1.67159 1.15506 1.28169 1.16296 1.17920 0.85791 0.91152 0.92833 1.42531 1.26300 1.06931 1.55638 1.15938 0.79209 0.85271 0.79593 1.91145 1.60541 1.33495 1.52009 1.45035 1.31828 1.01479 1.50965 1.43100 1.28656 1.03019 1.48769 1.19915 0.87566 0.92625 0.89318 1.21688 0.98291 0.99126 1.00288 1.21951 0.93993 0.97396 0.95248 1.23127 0.95814 0.92339 1.00916 1.98409 1.38123 1.97753 1.64507 1.72654 1.01525 1.26758 1.01419 1.73080 1.06446 1.19995 1.14645 1.21531 1.01553 0.95102 1.08187 0.90817 0.87786 0.85747 0.76711 0.71265 0.72030 0.82011 0.81996 0.85290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -18.52 10.83 55.55 0.60 -17.91 16 2 C 0.08 1.75 5.30 -17.35 -0.09 1.65 16 3 Si 0.91 17.11 29.57 -169.99 -5.03 12.08 16 4 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 5 H -0.28 -5.00 7.11 56.52 0.40 -4.60 16 6 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 7 C -0.45 -11.14 9.13 -37.65 -0.34 -11.49 16 8 H 0.08 1.94 7.87 -52.49 -0.41 1.53 16 9 C 0.14 3.63 5.58 -106.55 -0.59 3.04 16 10 C -0.28 -6.52 9.85 -39.07 -0.38 -6.91 16 11 C 0.12 2.79 11.10 -18.04 -0.20 2.59 16 12 N -0.55 -13.63 7.86 -12.76 -0.10 -13.73 16 13 C 0.35 8.02 7.42 -154.68 -1.15 6.87 16 14 N -0.66 -12.05 5.35 -15.86 -0.08 -12.13 16 15 C 0.70 12.84 8.64 -86.92 -0.75 12.09 16 16 O -0.51 -11.57 15.44 5.29 0.08 -11.49 16 17 N -0.53 -7.43 6.30 27.63 0.17 -7.25 16 18 N -0.50 -5.23 6.42 31.23 0.20 -5.03 16 19 C 0.35 3.53 7.68 -154.74 -1.19 2.34 16 20 C -0.16 -1.08 10.06 -39.00 -0.39 -1.47 16 21 C -0.06 -0.38 9.99 -39.21 -0.39 -0.77 16 22 C 0.05 0.52 7.37 -17.27 -0.13 0.40 16 23 Cl -0.02 -0.13 29.13 -51.86 -1.51 -1.64 16 24 N -0.18 -2.22 11.48 32.90 0.38 -1.84 16 25 N -0.29 -3.61 10.55 31.24 0.33 -3.28 16 26 C -0.24 -5.67 8.60 -38.45 -0.33 -6.00 16 27 H 0.28 5.89 8.29 -40.82 -0.34 5.55 16 28 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 29 H 0.13 2.52 8.06 -52.49 -0.42 2.10 16 30 H 0.40 5.60 6.64 -40.82 -0.27 5.33 16 31 H 0.44 6.12 8.08 -182.60 -1.47 4.65 16 32 H 0.43 3.51 6.72 -182.60 -1.23 2.28 16 33 H 0.16 0.54 8.06 -52.49 -0.42 0.12 16 34 H 0.16 0.53 8.06 -52.49 -0.42 0.11 16 35 H 0.13 3.00 6.27 -52.49 -0.33 2.67 16 LS Contribution 331.05 15.07 4.99 4.99 Total: -1.00 -31.97 331.05 -10.45 -42.43 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -4.54 Total: 12.46 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: -5.94 Total: 2.34 kcal Atomic # 7 Polarization: -62.67 SS G_CDS: 1.50 Total: -61.17 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.08 Total: -11.49 kcal Atomic # 14 Polarization: 17.11 SS G_CDS: -5.03 Total: 12.08 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -1.51 Total: -1.64 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.97 -10.45 -42.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001563140319.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.988 kcal (2) G-P(sol) polarization free energy of solvation -31.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds