Wall clock time and date at job start Tue Mar 31 2020 18:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86799 * 119.99652 * 2 1 4 4 H 1.48502 * 109.47314 * 270.00138 * 3 2 1 5 5 H 1.48501 * 109.47460 * 30.00031 * 3 2 1 6 6 H 1.48500 * 109.47182 * 150.00438 * 3 2 1 7 7 C 1.40027 * 120.00584 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00538 * 170.19581 * 7 2 1 9 9 C 1.41549 * 119.99807 * 350.19841 * 7 2 1 10 10 C 1.41160 * 121.00121 * 151.72728 * 9 7 2 11 11 C 1.36586 * 119.13001 * 180.02562 * 10 9 7 12 12 N 1.32075 * 121.25876 * 359.75002 * 11 10 9 13 13 C 1.32490 * 122.22753 * 0.52364 * 12 11 10 14 14 N 1.39455 * 119.64979 * 179.75350 * 13 12 11 15 15 C 1.34775 * 119.99887 * 5.09036 * 14 13 12 16 16 O 1.21586 * 120.00206 * 354.95529 * 15 14 13 17 17 N 1.34782 * 120.00151 * 174.95411 * 15 14 13 18 18 N 1.40098 * 119.99922 * 359.97438 * 17 15 14 19 19 C 1.39107 * 119.99875 * 179.97438 * 18 17 15 20 20 C 1.39504 * 120.14250 * 180.02562 * 19 18 17 21 21 C 1.38527 * 117.91369 * 179.97438 * 20 19 18 22 22 C 1.38956 * 118.02610 * 359.97438 * 21 20 19 23 23 Cl 1.73595 * 120.00883 * 179.97438 * 22 21 20 24 24 N 1.31875 * 119.98497 * 0.02562 * 22 21 20 25 25 N 1.28349 * 122.26704 * 359.97438 * 24 22 21 26 26 C 1.38649 * 120.70515 * 359.47178 * 13 12 11 27 27 H 0.96998 * 120.00740 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.42998 * 0.02562 * 10 9 7 29 29 H 1.07994 * 119.37337 * 179.97438 * 11 10 9 30 30 H 0.96998 * 120.00354 * 185.09193 * 14 13 12 31 31 H 0.96998 * 120.00051 * 180.02562 * 17 15 14 32 32 H 0.96998 * 120.00026 * 0.02562 * 18 17 15 33 33 H 1.07999 * 121.03957 * 359.95395 * 20 19 18 34 34 H 1.08000 * 120.98340 * 179.72364 * 21 20 19 35 35 H 1.07996 * 120.66421 * 180.27240 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 2.4887 2.0465 -1.4001 5 1 1.4387 2.6527 0.7000 6 1 3.5389 1.4403 0.6999 7 6 2.0076 -1.2126 -0.0005 8 1 3.0758 -1.2194 -0.1598 9 6 1.3154 -2.4296 0.2076 10 6 1.7916 -3.6399 -0.3412 11 6 1.0931 -4.7920 -0.1167 12 7 -0.0124 -4.7934 0.6059 13 6 -0.5084 -3.6874 1.1407 14 7 -1.6827 -3.7501 1.8903 15 6 -2.2510 -4.9434 2.1540 16 8 -1.7928 -5.9568 1.6627 17 7 -3.3272 -5.0134 2.9623 18 7 -3.8549 -3.8458 3.5288 19 6 -4.9660 -3.9180 4.3627 20 6 -5.4943 -2.7572 4.9280 21 6 -6.6016 -2.8825 5.7508 22 6 -7.1178 -4.1553 5.9616 23 17 -8.5040 -4.3717 6.9839 24 7 -6.5537 -5.1989 5.3857 25 7 -5.5277 -5.0890 4.6224 26 6 0.1308 -2.4692 0.9680 27 1 -0.4851 0.8400 -0.0004 28 1 2.6963 -3.6546 -0.9308 29 1 1.4536 -5.7201 -0.5351 30 1 -2.0905 -2.9348 2.2219 31 1 -3.7360 -5.8723 3.1523 32 1 -3.4459 -2.9869 3.3391 33 1 -5.0534 -1.7912 4.7306 34 1 -7.0480 -2.0170 6.2178 35 1 -0.2717 -1.5688 1.4079 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001563140319.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:45 Heat of formation + Delta-G solvation = 96.581123 kcal Electronic energy + Delta-G solvation = -24399.975159 eV Core-core repulsion = 20460.930791 eV Total energy + Delta-G solvation = -3939.044368 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 334.069 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.24055 -41.56747 -39.92513 -38.11774 -37.55280 -36.18789 -35.55045 -34.46790 -33.51737 -32.41794 -30.57908 -30.02094 -27.91062 -25.94765 -24.86468 -24.08695 -23.80985 -21.86218 -20.38591 -20.12970 -19.27832 -18.37215 -18.17702 -17.66645 -17.02996 -16.92660 -16.73158 -16.38355 -16.11687 -16.03917 -15.41832 -15.07236 -14.70253 -14.57372 -14.51090 -14.31087 -13.97170 -13.20170 -12.86056 -12.77908 -12.76140 -12.67700 -12.46580 -12.13979 -11.89183 -11.67815 -11.56329 -11.38643 -11.19393 -10.86423 -10.74448 -9.90229 -9.68018 -9.07881 -8.78883 -8.58571 -6.56246 -0.29747 -0.16332 0.53834 0.76889 0.79214 1.00472 1.44504 1.54435 1.58797 1.70218 2.03255 2.22889 2.38443 2.83263 2.88815 3.30050 3.64983 3.66638 3.73838 3.87698 4.11956 4.47554 4.65396 4.72898 4.75504 4.83607 4.93245 5.06615 5.17671 5.24774 5.46556 5.57619 5.70091 5.96229 6.09452 6.24134 6.54187 6.76706 6.81957 6.87582 7.34285 7.54610 7.80602 8.31152 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.015890 B = 0.002390 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.663103 B =11714.496122 C =13398.862204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.040 3.960 3 Si 0.987 3.013 4 H -0.267 1.267 5 H -0.262 1.262 6 H -0.261 1.261 7 C -0.483 4.483 8 H 0.082 0.918 9 C 0.115 3.885 10 C -0.290 4.290 11 C 0.113 3.887 12 N -0.579 5.579 13 C 0.347 3.653 14 N -0.652 5.652 15 C 0.704 3.296 16 O -0.558 6.558 17 N -0.521 5.521 18 N -0.500 5.500 19 C 0.336 3.664 20 C -0.138 4.138 21 C -0.049 4.049 22 C 0.054 3.946 23 Cl -0.008 7.008 24 N -0.223 5.223 25 N -0.324 5.324 26 C -0.250 4.250 27 H 0.292 0.708 28 H 0.116 0.884 29 H 0.148 0.852 30 H 0.417 0.583 31 H 0.443 0.557 32 H 0.446 0.554 33 H 0.205 0.795 34 H 0.204 0.796 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.946 5.469 12.656 19.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.177 4.177 3 Si 0.807 3.193 4 H -0.192 1.192 5 H -0.186 1.186 6 H -0.185 1.185 7 C -0.514 4.514 8 H 0.101 0.899 9 C 0.107 3.893 10 C -0.314 4.314 11 C -0.040 4.040 12 N -0.299 5.299 13 C 0.120 3.880 14 N -0.303 5.303 15 C 0.403 3.597 16 O -0.427 6.427 17 N -0.277 5.277 18 N -0.236 5.236 19 C 0.093 3.907 20 C -0.172 4.172 21 C -0.078 4.078 22 C -0.125 4.125 23 Cl 0.020 6.980 24 N -0.065 5.065 25 N -0.177 5.177 26 C -0.275 4.275 27 H 0.103 0.897 28 H 0.134 0.866 29 H 0.165 0.835 30 H 0.255 0.745 31 H 0.289 0.711 32 H 0.293 0.707 33 H 0.222 0.778 34 H 0.221 0.779 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -14.202 2.328 12.146 18.832 hybrid contribution 0.418 2.834 0.063 2.865 sum -13.784 5.162 12.209 19.124 Atomic orbital electron populations 1.69754 1.08707 1.30855 1.34849 1.26732 0.95721 1.04258 0.90944 0.85124 0.79045 0.75744 0.79342 1.19178 1.18611 1.18467 1.19838 0.96175 0.90852 1.44532 0.89946 1.18015 0.91056 0.93245 0.87032 1.21909 1.05244 0.94546 1.09720 1.21913 0.90306 0.97639 0.94145 1.67280 1.16292 1.29024 1.17271 1.18110 0.86734 0.90598 0.92528 1.42277 1.25126 1.07980 1.54965 1.15883 0.79709 0.84444 0.79705 1.91104 1.62530 1.34952 1.54160 1.44543 1.30407 1.03105 1.49663 1.43033 1.29264 1.01829 1.49437 1.20182 0.87437 0.93482 0.89620 1.22168 0.97317 0.99520 0.98177 1.22420 0.93425 0.97365 0.94541 1.23507 0.95651 0.93179 1.00118 1.98413 1.37656 1.97830 1.64128 1.72552 1.02446 1.28485 1.02992 1.72933 1.07250 1.21784 1.15693 1.21523 1.01819 0.95411 1.08786 0.89679 0.86551 0.83454 0.74511 0.71085 0.70707 0.77794 0.77926 0.85084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -37.14 10.83 21.84 0.24 -36.90 16 2 C 0.04 1.80 5.30 85.29 0.45 2.25 16 3 Si 0.99 33.87 29.57 68.60 2.03 35.90 16 4 H -0.27 -9.06 7.11 99.48 0.71 -8.35 16 5 H -0.26 -8.35 7.11 99.48 0.71 -7.64 16 6 H -0.26 -8.91 7.11 99.48 0.71 -8.21 16 7 C -0.48 -23.81 9.13 23.52 0.21 -23.59 16 8 H 0.08 3.91 7.87 -2.91 -0.02 3.89 16 9 C 0.11 5.85 5.58 -21.11 -0.12 5.74 16 10 C -0.29 -13.91 9.85 22.60 0.22 -13.69 16 11 C 0.11 5.32 11.10 84.27 0.94 6.25 16 12 N -0.58 -29.08 7.86 -194.27 -1.53 -30.60 16 13 C 0.35 16.15 7.42 132.76 0.99 17.14 16 14 N -0.65 -23.57 5.35 -322.36 -1.72 -25.30 16 15 C 0.70 26.02 8.64 179.05 1.55 27.56 16 16 O -0.56 -26.17 15.44 -3.99 -0.06 -26.23 16 17 N -0.52 -14.43 6.30 -184.74 -1.16 -15.59 16 18 N -0.50 -9.65 6.42 -55.11 -0.35 -10.00 16 19 C 0.34 6.21 7.68 133.10 1.02 7.23 16 20 C -0.14 -1.36 10.06 22.64 0.23 -1.14 16 21 C -0.05 -0.47 9.99 22.51 0.22 -0.25 16 22 C 0.05 0.92 7.37 84.86 0.62 1.55 16 23 Cl -0.01 -0.12 29.13 -2.72 -0.08 -0.20 16 24 N -0.22 -5.39 11.48 -49.83 -0.57 -5.96 16 25 N -0.32 -8.01 10.55 -55.07 -0.58 -8.59 16 26 C -0.25 -12.01 8.60 23.00 0.20 -11.82 16 27 H 0.29 11.77 8.29 -92.71 -0.77 11.00 16 28 H 0.12 5.09 8.06 -2.91 -0.02 5.06 16 29 H 0.15 6.01 8.06 -2.91 -0.02 5.99 16 30 H 0.42 11.32 6.64 -92.71 -0.62 10.70 16 31 H 0.44 12.53 8.08 -213.32 -1.72 10.81 16 32 H 0.45 6.22 6.72 -213.32 -1.43 4.79 16 33 H 0.21 0.23 8.06 -2.91 -0.02 0.21 16 34 H 0.20 0.27 8.06 -2.91 -0.02 0.24 16 35 H 0.13 6.10 6.27 -2.91 -0.02 6.09 16 Total: -1.00 -71.85 331.05 0.18 -71.66 By element: Atomic # 1 Polarization: 37.13 SS G_CDS: -2.56 Total: 34.58 kcal Atomic # 6 Polarization: 10.70 SS G_CDS: 6.54 Total: 17.23 kcal Atomic # 7 Polarization: -127.26 SS G_CDS: -5.68 Total: -132.95 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.06 Total: -26.23 kcal Atomic # 14 Polarization: 33.87 SS G_CDS: 2.03 Total: 35.90 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -0.08 Total: -0.20 kcal Total: -71.85 0.18 -71.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001563140319.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.242 kcal (2) G-P(sol) polarization free energy of solvation -71.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds