Wall clock time and date at job start Tue Mar 31 2020 19:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86793 * 120.00092 * 2 1 4 4 H 1.48491 * 109.47429 * 270.00214 * 3 2 1 5 5 H 1.48503 * 109.47209 * 30.00913 * 3 2 1 6 6 H 1.48507 * 109.47117 * 150.00144 * 3 2 1 7 7 C 1.38735 * 119.99765 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99593 * 359.97438 * 7 2 1 9 9 S 1.76196 * 119.99999 * 179.97438 * 7 2 1 10 10 C 1.76194 * 100.00177 * 185.11764 * 9 7 2 11 11 C 1.39224 * 120.02059 * 265.25189 * 10 9 7 12 12 C 1.38136 * 120.19822 * 179.76350 * 11 10 9 13 13 C 1.38078 * 120.24665 * 0.51109 * 12 11 10 14 14 C 1.39633 * 120.03856 * 359.74707 * 13 12 11 15 15 C 1.47865 * 120.10041 * 180.02562 * 14 13 12 16 16 O 1.21548 * 119.99959 * 179.97438 * 15 14 13 17 17 N 1.34774 * 120.00091 * 359.97277 * 15 14 13 18 18 C 1.46497 * 120.00339 * 179.97438 * 17 15 14 19 19 H 1.08998 * 109.46886 * 35.00006 * 18 17 15 20 20 C 1.52995 * 109.47505 * 155.00391 * 18 17 15 21 21 N 1.46907 * 109.46658 * 304.99907 * 20 18 17 22 22 C 1.53006 * 109.47148 * 275.00465 * 18 17 15 23 23 F 1.39905 * 109.47009 * 59.99601 * 22 18 17 24 24 F 1.39902 * 109.46840 * 179.97438 * 22 18 17 25 25 F 1.39897 * 109.47146 * 299.99478 * 22 18 17 26 26 C 1.38839 * 120.02036 * 85.52685 * 10 9 7 27 27 H 0.96994 * 120.00079 * 359.97438 * 1 2 3 28 28 H 1.07995 * 119.89936 * 0.02598 * 11 10 9 29 29 H 1.08000 * 119.87482 * 180.23717 * 12 11 10 30 30 H 1.08002 * 119.98211 * 179.76233 * 13 12 11 31 31 H 0.97004 * 120.00038 * 0.02562 * 17 15 14 32 32 H 1.08997 * 109.47395 * 65.00057 * 20 18 17 33 33 H 1.08998 * 109.47148 * 185.00698 * 20 18 17 34 34 H 1.00902 * 110.99570 * 179.97438 * 21 20 18 35 35 H 1.00900 * 111.00417 * 303.95406 * 21 20 18 36 36 H 1.08000 * 120.11935 * 359.95801 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4479 2.6526 0.7002 6 1 3.5479 1.4401 0.7000 7 6 2.0099 -1.2015 -0.0005 8 1 1.4698 -2.1368 -0.0005 9 16 3.7719 -1.2016 -0.0012 10 6 4.0778 -2.9298 -0.1565 11 6 4.2974 -3.7032 0.9801 12 6 4.5328 -5.0593 0.8630 13 6 4.5622 -5.6551 -0.3823 14 6 4.3485 -4.8881 -1.5294 15 6 4.3792 -5.5248 -2.8636 16 8 4.1925 -4.8555 -3.8608 17 7 4.6142 -6.8473 -2.9739 18 6 4.6441 -7.4783 -4.2957 19 1 5.0705 -6.7843 -5.0199 20 6 5.5007 -8.7446 -4.2371 21 7 6.8334 -8.4106 -3.7173 22 6 3.2199 -7.8450 -4.7181 23 9 2.4367 -6.6870 -4.7716 24 9 3.2485 -8.4470 -5.9806 25 9 2.6726 -8.7357 -3.7885 26 6 4.1056 -3.5202 -1.4128 27 1 -0.4850 0.8400 0.0004 28 1 4.2796 -3.2423 1.9566 29 1 4.6987 -5.6550 1.7485 30 1 4.7504 -6.7151 -0.4692 31 1 4.7629 -7.3816 -2.1780 32 1 5.0267 -9.4739 -3.5802 33 1 5.5961 -9.1653 -5.2381 34 1 7.4186 -9.2312 -3.6685 35 1 7.2678 -7.6888 -4.2726 36 1 3.9393 -2.9220 -2.2965 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580052724.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:51 Heat of formation + Delta-G solvation = -164.810959 kcal Electronic energy + Delta-G solvation = -26150.106152 eV Core-core repulsion = 21731.161531 eV Total energy + Delta-G solvation = -4418.944621 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.070 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.26970 -47.82439 -47.66925 -40.21058 -38.14576 -36.67937 -33.71645 -32.49102 -31.35342 -30.65890 -29.39639 -25.67399 -25.16519 -24.00783 -22.56051 -21.81676 -20.71644 -18.79158 -18.69597 -18.34513 -18.19130 -17.35796 -16.75361 -16.00616 -15.41640 -15.18897 -15.00365 -14.84012 -14.73238 -14.64219 -14.50621 -14.32828 -14.17344 -13.89632 -13.84277 -13.74993 -13.55938 -13.46246 -12.92284 -12.55839 -12.21599 -12.14961 -11.91488 -11.36656 -11.21937 -11.09502 -10.63468 -10.05933 -9.88806 -9.57607 -9.36422 -9.21538 -9.07644 -8.68557 -8.16633 -7.13408 -6.32074 -4.07876 1.04725 1.57910 2.33667 2.63385 2.88978 2.98877 3.27820 3.38828 3.39090 3.50061 3.63471 3.98140 4.06798 4.17079 4.26741 4.36618 4.48793 4.67791 4.89032 4.90134 5.02818 5.06760 5.12751 5.17475 5.63813 5.76666 5.87343 5.93846 6.16464 6.40068 6.47954 6.55826 6.78824 6.80971 7.07869 7.25901 7.92018 8.07256 8.45752 9.11635 10.77389 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.017663 B = 0.003075 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.858634 B = 9102.180718 C = 9871.252462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.095 3.905 3 Si 0.858 3.142 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.239 1.239 7 C -0.510 4.510 8 H 0.091 0.909 9 S -0.111 6.111 10 C -0.086 4.086 11 C -0.049 4.049 12 C -0.139 4.139 13 C -0.081 4.081 14 C -0.152 4.152 15 C 0.567 3.433 16 O -0.519 6.519 17 N -0.709 5.709 18 C 0.110 3.890 19 H 0.129 0.871 20 C 0.052 3.948 21 N -0.840 5.840 22 C 0.435 3.565 23 F -0.165 7.165 24 F -0.183 7.183 25 F -0.182 7.182 26 C -0.014 4.014 27 H 0.272 0.728 28 H 0.134 0.866 29 H 0.127 0.873 30 H 0.121 0.879 31 H 0.413 0.587 32 H 0.092 0.908 33 H 0.058 0.942 34 H 0.352 0.648 35 H 0.348 0.652 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.708 -20.409 -6.115 25.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.114 4.114 3 Si 0.682 3.318 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.163 1.163 7 C -0.657 4.657 8 H 0.109 0.891 9 S 0.123 5.877 10 C -0.197 4.197 11 C -0.070 4.070 12 C -0.159 4.159 13 C -0.100 4.100 14 C -0.156 4.156 15 C 0.356 3.644 16 O -0.395 6.395 17 N -0.364 5.364 18 C 0.001 3.999 19 H 0.147 0.853 20 C -0.080 4.080 21 N -0.372 5.372 22 C 0.379 3.621 23 F -0.146 7.146 24 F -0.165 7.165 25 F -0.164 7.164 26 C -0.036 4.036 27 H 0.082 0.918 28 H 0.151 0.849 29 H 0.145 0.855 30 H 0.138 0.862 31 H 0.251 0.749 32 H 0.111 0.889 33 H 0.077 0.923 34 H 0.166 0.834 35 H 0.161 0.839 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 13.696 -18.638 -6.088 23.917 hybrid contribution -0.704 -1.016 -0.811 1.478 sum 12.992 -19.654 -6.899 24.549 Atomic orbital electron populations 1.69928 1.05868 1.27811 1.47541 1.24746 0.94507 0.98841 0.93277 0.86734 0.81576 0.83495 0.79958 1.19023 1.19800 1.16326 1.22250 0.86723 0.97732 1.58969 0.89069 1.83063 1.11273 0.97794 1.95619 1.22192 1.02312 1.01109 0.94050 1.21917 0.93243 0.93060 0.98765 1.21050 1.02720 0.95075 0.97061 1.21189 0.97906 0.98705 0.92210 1.19672 1.09307 0.94945 0.91718 1.18518 0.75213 0.81039 0.89613 1.90812 1.47626 1.62708 1.38342 1.45576 1.74368 1.09081 1.07351 1.21988 0.89653 0.98209 0.90057 0.85332 1.21999 0.91055 0.94287 1.00666 1.58520 1.03799 1.15340 1.59515 1.21204 0.90965 0.75102 0.74868 1.93304 1.76910 1.48420 1.95959 1.93175 1.96929 1.84163 1.42241 1.93173 1.87970 1.69342 1.65879 1.21895 0.91054 0.92538 0.98116 0.91801 0.84858 0.85525 0.86160 0.74920 0.88948 0.92348 0.83417 0.83887 0.84131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.43 13.97 55.49 0.78 -25.65 16 2 C 0.10 2.75 5.50 -17.45 -0.10 2.66 16 3 Si 0.86 21.05 27.73 -169.99 -4.71 16.34 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.24 -5.66 6.74 56.52 0.38 -5.28 16 7 C -0.51 -14.67 10.01 30.92 0.31 -14.36 16 8 H 0.09 2.86 8.02 -52.49 -0.42 2.44 16 9 S -0.11 -2.69 19.38 -107.50 -2.08 -4.77 16 10 C -0.09 -1.77 5.45 -38.99 -0.21 -1.98 16 11 C -0.05 -0.84 9.79 -39.25 -0.38 -1.22 16 12 C -0.14 -1.90 10.02 -39.68 -0.40 -2.30 16 13 C -0.08 -1.06 9.54 -39.12 -0.37 -1.44 16 14 C -0.15 -2.45 5.87 -105.00 -0.62 -3.07 16 15 C 0.57 8.65 7.31 -12.32 -0.09 8.56 16 16 O -0.52 -9.67 14.92 5.32 0.08 -9.59 16 17 N -0.71 -7.63 4.67 -54.75 -0.26 -7.89 16 18 C 0.11 1.01 2.30 -67.93 -0.16 0.86 16 19 H 0.13 1.24 7.58 -51.93 -0.39 0.85 16 20 C 0.05 0.29 6.10 -3.82 -0.02 0.27 16 21 N -0.84 -4.09 9.35 -10.37 -0.10 -4.19 16 22 C 0.44 4.91 2.82 37.16 0.10 5.02 16 23 F -0.16 -2.53 15.68 2.25 0.04 -2.49 16 24 F -0.18 -1.91 16.89 2.25 0.04 -1.88 16 25 F -0.18 -2.02 16.63 2.25 0.04 -1.98 16 26 C -0.01 -0.28 9.34 -38.92 -0.36 -0.65 16 27 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 28 H 0.13 2.15 8.06 -52.49 -0.42 1.73 16 29 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 30 H 0.12 1.11 6.40 -52.49 -0.34 0.77 16 31 H 0.41 3.58 6.63 -40.82 -0.27 3.31 16 32 H 0.09 0.48 7.66 -51.93 -0.40 0.09 16 33 H 0.06 0.26 7.94 -51.93 -0.41 -0.15 16 34 H 0.35 1.03 9.08 -39.29 -0.36 0.67 16 35 H 0.35 1.66 8.99 -39.29 -0.35 1.31 16 36 H 0.14 2.98 7.65 -52.49 -0.40 2.58 16 LS Contribution 338.58 15.07 5.10 5.10 Total: -1.00 -33.63 338.58 -6.72 -40.36 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -3.34 Total: 4.30 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -2.30 Total: -7.66 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.42 Total: -37.73 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.08 Total: -9.59 kcal Atomic # 9 Polarization: -6.46 SS G_CDS: 0.11 Total: -6.35 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.71 Total: 16.34 kcal Atomic # 16 Polarization: -2.69 SS G_CDS: -2.08 Total: -4.77 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.63 -6.72 -40.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052724.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.454 kcal (2) G-P(sol) polarization free energy of solvation -33.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds