Wall clock time and date at job start Tue Mar 31 2020 19:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86793 * 120.00092 * 2 1 4 4 H 1.48491 * 109.47429 * 270.00214 * 3 2 1 5 5 H 1.48503 * 109.47209 * 30.00913 * 3 2 1 6 6 H 1.48507 * 109.47117 * 150.00144 * 3 2 1 7 7 C 1.38735 * 119.99765 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99593 * 359.97438 * 7 2 1 9 9 S 1.76196 * 119.99999 * 179.97438 * 7 2 1 10 10 C 1.76194 * 100.00177 * 185.11764 * 9 7 2 11 11 C 1.39224 * 120.02059 * 265.25189 * 10 9 7 12 12 C 1.38136 * 120.19822 * 179.76350 * 11 10 9 13 13 C 1.38078 * 120.24665 * 0.51109 * 12 11 10 14 14 C 1.39633 * 120.03856 * 359.74707 * 13 12 11 15 15 C 1.47865 * 120.10041 * 180.02562 * 14 13 12 16 16 O 1.21548 * 119.99959 * 179.97438 * 15 14 13 17 17 N 1.34774 * 120.00091 * 359.97277 * 15 14 13 18 18 C 1.46497 * 120.00339 * 179.97438 * 17 15 14 19 19 H 1.08998 * 109.46886 * 35.00006 * 18 17 15 20 20 C 1.52995 * 109.47505 * 155.00391 * 18 17 15 21 21 N 1.46907 * 109.46658 * 304.99907 * 20 18 17 22 22 C 1.53006 * 109.47148 * 275.00465 * 18 17 15 23 23 F 1.39905 * 109.47009 * 59.99601 * 22 18 17 24 24 F 1.39902 * 109.46840 * 179.97438 * 22 18 17 25 25 F 1.39897 * 109.47146 * 299.99478 * 22 18 17 26 26 C 1.38839 * 120.02036 * 85.52685 * 10 9 7 27 27 H 0.96994 * 120.00079 * 359.97438 * 1 2 3 28 28 H 1.07995 * 119.89936 * 0.02598 * 11 10 9 29 29 H 1.08000 * 119.87482 * 180.23717 * 12 11 10 30 30 H 1.08002 * 119.98211 * 179.76233 * 13 12 11 31 31 H 0.97004 * 120.00038 * 0.02562 * 17 15 14 32 32 H 1.08997 * 109.47395 * 65.00057 * 20 18 17 33 33 H 1.08998 * 109.47148 * 185.00698 * 20 18 17 34 34 H 1.00902 * 110.99570 * 179.97438 * 21 20 18 35 35 H 1.00900 * 111.00417 * 303.95406 * 21 20 18 36 36 H 1.08000 * 120.11935 * 359.95801 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4479 2.6526 0.7002 6 1 3.5479 1.4401 0.7000 7 6 2.0099 -1.2015 -0.0005 8 1 1.4698 -2.1368 -0.0005 9 16 3.7719 -1.2016 -0.0012 10 6 4.0778 -2.9298 -0.1565 11 6 4.2974 -3.7032 0.9801 12 6 4.5328 -5.0593 0.8630 13 6 4.5622 -5.6551 -0.3823 14 6 4.3485 -4.8881 -1.5294 15 6 4.3792 -5.5248 -2.8636 16 8 4.1925 -4.8555 -3.8608 17 7 4.6142 -6.8473 -2.9739 18 6 4.6441 -7.4783 -4.2957 19 1 5.0705 -6.7843 -5.0199 20 6 5.5007 -8.7446 -4.2371 21 7 6.8334 -8.4106 -3.7173 22 6 3.2199 -7.8450 -4.7181 23 9 2.4367 -6.6870 -4.7716 24 9 3.2485 -8.4470 -5.9806 25 9 2.6726 -8.7357 -3.7885 26 6 4.1056 -3.5202 -1.4128 27 1 -0.4850 0.8400 0.0004 28 1 4.2796 -3.2423 1.9566 29 1 4.6987 -5.6550 1.7485 30 1 4.7504 -6.7151 -0.4692 31 1 4.7629 -7.3816 -2.1780 32 1 5.0267 -9.4739 -3.5802 33 1 5.5961 -9.1653 -5.2381 34 1 7.4186 -9.2312 -3.6685 35 1 7.2678 -7.6888 -4.2726 36 1 3.9393 -2.9220 -2.2965 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580052724.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:51 Heat of formation + Delta-G solvation = -190.342216 kcal Electronic energy + Delta-G solvation = -26151.213271 eV Core-core repulsion = 21731.161531 eV Total energy + Delta-G solvation = -4420.051739 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.070 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -51.20277 -48.71083 -48.68905 -41.38591 -39.36349 -37.54243 -34.71968 -34.51815 -32.47874 -31.96721 -30.31912 -27.92386 -25.90731 -25.12771 -23.81740 -22.70752 -21.89594 -20.15092 -19.66105 -19.52639 -19.16553 -18.88236 -17.64121 -17.18020 -17.11099 -16.64823 -16.01641 -15.92526 -15.82402 -15.54498 -15.51601 -15.31489 -15.11010 -14.99244 -14.87170 -14.83800 -14.72438 -14.62967 -14.37754 -13.94959 -13.60851 -13.25510 -13.10334 -13.07036 -12.73413 -12.61151 -12.27880 -11.85386 -11.32755 -11.21990 -10.95807 -10.60325 -9.97668 -9.75596 -9.72407 -9.14319 -8.54031 -6.28256 -0.24154 0.20789 1.06294 1.31442 1.39111 1.43829 1.60583 1.77182 1.84330 2.21596 2.55006 2.63726 2.82428 2.84199 2.96783 3.10324 3.55598 3.59109 3.75601 3.90877 3.92828 4.01490 4.31114 4.38294 4.46083 4.60130 4.65541 4.89285 4.98762 5.17712 5.30405 5.43685 5.68448 5.82030 6.05324 6.09988 6.27424 6.52868 6.88325 6.96376 8.59734 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.017663 B = 0.003075 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.858634 B = 9102.180718 C = 9871.252462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.040 3.960 3 Si 0.923 3.077 4 H -0.263 1.263 5 H -0.257 1.257 6 H -0.225 1.225 7 C -0.525 4.525 8 H 0.044 0.956 9 S -0.113 6.113 10 C -0.121 4.121 11 C -0.056 4.056 12 C -0.122 4.122 13 C -0.055 4.055 14 C -0.158 4.158 15 C 0.567 3.433 16 O -0.562 6.562 17 N -0.687 5.687 18 C 0.112 3.888 19 H 0.123 0.877 20 C 0.061 3.939 21 N -0.844 5.844 22 C 0.432 3.568 23 F -0.194 7.194 24 F -0.178 7.178 25 F -0.179 7.179 26 C -0.040 4.040 27 H 0.278 0.722 28 H 0.141 0.859 29 H 0.178 0.822 30 H 0.174 0.826 31 H 0.426 0.574 32 H 0.104 0.896 33 H 0.076 0.924 34 H 0.365 0.635 35 H 0.349 0.651 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.218 -23.162 -5.085 28.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.165 4.165 3 Si 0.743 3.257 4 H -0.187 1.187 5 H -0.182 1.182 6 H -0.148 1.148 7 C -0.672 4.672 8 H 0.063 0.937 9 S 0.121 5.879 10 C -0.232 4.232 11 C -0.077 4.077 12 C -0.141 4.141 13 C -0.074 4.074 14 C -0.163 4.163 15 C 0.356 3.644 16 O -0.441 6.441 17 N -0.342 5.342 18 C 0.003 3.997 19 H 0.141 0.859 20 C -0.070 4.070 21 N -0.378 5.378 22 C 0.375 3.625 23 F -0.176 7.176 24 F -0.159 7.159 25 F -0.161 7.161 26 C -0.062 4.062 27 H 0.087 0.913 28 H 0.158 0.842 29 H 0.195 0.805 30 H 0.191 0.809 31 H 0.267 0.733 32 H 0.122 0.878 33 H 0.094 0.906 34 H 0.181 0.819 35 H 0.162 0.838 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 16.232 -21.459 -5.038 27.375 hybrid contribution -1.470 -0.456 -1.166 1.931 sum 14.762 -21.916 -6.204 27.142 Atomic orbital electron populations 1.70039 1.07705 1.29205 1.48851 1.25750 0.95422 1.02683 0.92620 0.85759 0.80874 0.78709 0.80331 1.18719 1.18157 1.14830 1.22396 0.90004 0.96146 1.58690 0.93719 1.82588 1.06938 1.02540 1.95834 1.22072 1.06148 0.99083 0.95859 1.22102 0.93112 0.94748 0.97739 1.21568 0.99890 0.93522 0.99096 1.21759 0.94222 1.00792 0.90604 1.19822 1.09025 0.93716 0.93690 1.18452 0.75014 0.82312 0.88668 1.90798 1.49704 1.64066 1.39487 1.45341 1.72500 1.07481 1.08833 1.22202 0.88867 0.99803 0.88813 0.85878 1.21980 0.90828 0.92086 1.02135 1.58516 1.03654 1.16165 1.59432 1.21517 0.91406 0.74349 0.75213 1.93254 1.77927 1.50251 1.96133 1.93183 1.96903 1.83911 1.41926 1.93174 1.88093 1.69065 1.65738 1.21644 0.93440 0.94400 0.96746 0.91272 0.84151 0.80463 0.80891 0.73295 0.87804 0.90643 0.81856 0.83823 0.87440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.84 13.97 21.64 0.30 -57.54 16 2 C 0.04 2.41 5.50 84.84 0.47 2.88 16 3 Si 0.92 44.39 27.73 68.60 1.90 46.29 16 4 H -0.26 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 6 H -0.22 -10.22 6.74 99.48 0.67 -9.55 16 7 C -0.53 -31.89 10.01 67.94 0.68 -31.21 16 8 H 0.04 3.01 8.02 -2.91 -0.02 2.99 16 9 S -0.11 -5.64 19.38 -56.49 -1.09 -6.73 16 10 C -0.12 -5.10 5.45 22.65 0.12 -4.98 16 11 C -0.06 -1.86 9.79 22.48 0.22 -1.64 16 12 C -0.12 -2.80 10.02 22.21 0.22 -2.57 16 13 C -0.06 -1.22 9.54 22.57 0.22 -1.01 16 14 C -0.16 -4.96 5.87 -20.11 -0.12 -5.08 16 15 C 0.57 16.95 7.31 86.79 0.63 17.58 16 16 O -0.56 -21.64 14.92 -3.87 -0.06 -21.70 16 17 N -0.69 -13.11 4.67 -445.40 -2.08 -15.19 16 18 C 0.11 1.84 2.30 44.99 0.10 1.94 16 19 H 0.12 2.25 7.58 -2.39 -0.02 2.23 16 20 C 0.06 0.48 6.10 86.30 0.53 1.00 16 21 N -0.84 -5.20 9.35 -186.72 -1.75 -6.95 16 22 C 0.43 9.20 2.82 71.98 0.20 9.41 16 23 F -0.19 -6.04 15.68 44.97 0.70 -5.34 16 24 F -0.18 -3.46 16.89 44.97 0.76 -2.70 16 25 F -0.18 -3.60 16.63 44.97 0.75 -2.85 16 26 C -0.04 -1.66 9.34 22.70 0.21 -1.45 16 27 H 0.28 16.03 8.31 -92.71 -0.77 15.25 16 28 H 0.14 4.35 8.06 -2.91 -0.02 4.32 16 29 H 0.18 2.41 8.06 -2.91 -0.02 2.39 16 30 H 0.17 2.01 6.40 -2.91 -0.02 1.99 16 31 H 0.43 5.54 6.63 -92.71 -0.61 4.92 16 32 H 0.10 0.64 7.66 -2.39 -0.02 0.62 16 33 H 0.08 0.40 7.94 -2.39 -0.02 0.38 16 34 H 0.37 0.74 9.08 -89.69 -0.81 -0.07 16 35 H 0.35 2.32 8.99 -89.69 -0.81 1.51 16 36 H 0.11 5.01 7.65 -2.91 -0.02 4.99 16 Total: -1.00 -80.30 338.58 1.84 -78.46 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -1.09 Total: 9.36 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: 3.49 Total: -15.12 kcal Atomic # 7 Polarization: -76.15 SS G_CDS: -3.52 Total: -79.67 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.06 Total: -21.70 kcal Atomic # 9 Polarization: -13.10 SS G_CDS: 2.21 Total: -10.89 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.90 Total: 46.29 kcal Atomic # 16 Polarization: -5.64 SS G_CDS: -1.09 Total: -6.73 kcal Total: -80.30 1.84 -78.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052724.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.887 kcal (2) G-P(sol) polarization free energy of solvation -80.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds