Wall clock time and date at job start Tue Mar 31 2020 19:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86808 * 120.00349 * 2 1 4 4 H 1.48507 * 109.46828 * 269.99564 * 3 2 1 5 5 H 1.48497 * 109.47025 * 29.99411 * 3 2 1 6 6 H 1.48494 * 109.47393 * 149.99620 * 3 2 1 7 7 C 1.38735 * 119.99938 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99573 * 180.02562 * 7 2 1 9 9 S 1.76196 * 119.99999 * 0.02562 * 7 2 1 10 10 C 1.76194 * 100.00177 * 185.11764 * 9 7 2 11 11 C 1.39223 * 120.02078 * 265.25662 * 10 9 7 12 12 C 1.38136 * 120.20041 * 179.73916 * 11 10 9 13 13 C 1.38082 * 120.24366 * 0.51175 * 12 11 10 14 14 C 1.39629 * 120.03856 * 359.76550 * 13 12 11 15 15 C 1.47867 * 120.09965 * 179.97438 * 14 13 12 16 16 O 1.21554 * 120.00163 * 180.02562 * 15 14 13 17 17 N 1.34774 * 119.99860 * 0.02562 * 15 14 13 18 18 C 1.46507 * 119.99929 * 180.02562 * 17 15 14 19 19 H 1.09008 * 109.46955 * 324.99929 * 18 17 15 20 20 C 1.53001 * 109.47184 * 205.00549 * 18 17 15 21 21 N 1.46901 * 109.47068 * 54.99544 * 20 18 17 22 22 C 1.52998 * 109.47103 * 85.00103 * 18 17 15 23 23 F 1.39895 * 109.47134 * 60.00206 * 22 18 17 24 24 F 1.39904 * 109.46799 * 180.02562 * 22 18 17 25 25 F 1.39903 * 109.47266 * 299.99817 * 22 18 17 26 26 C 1.38839 * 120.02036 * 85.52685 * 10 9 7 27 27 H 0.97003 * 119.99827 * 0.02562 * 1 2 3 28 28 H 1.07999 * 119.90035 * 359.97438 * 11 10 9 29 29 H 1.08000 * 119.87689 * 180.23260 * 12 11 10 30 30 H 1.08002 * 119.97646 * 179.74476 * 13 12 11 31 31 H 0.96996 * 120.00509 * 0.02562 * 17 15 14 32 32 H 1.08996 * 109.46883 * 174.99788 * 20 18 17 33 33 H 1.09000 * 109.46534 * 294.99754 * 20 18 17 34 34 H 1.00895 * 110.99885 * 56.05281 * 21 20 18 35 35 H 1.00903 * 110.99506 * 179.97438 * 21 20 18 36 36 H 1.07996 * 120.11843 * 359.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4002 5 1 1.4478 2.6527 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0098 -1.2015 0.0005 8 1 3.0898 -1.2014 0.0010 9 16 1.1288 -2.7274 0.0005 10 6 2.4725 -3.8565 0.1561 11 6 3.0329 -4.4331 -0.9805 12 6 4.0899 -5.3147 -0.8632 13 6 4.5909 -5.6381 0.3822 14 6 4.0327 -5.0701 1.5292 15 6 4.5678 -5.4159 2.8636 16 8 4.0803 -4.9208 3.8609 17 7 5.5961 -6.2801 2.9740 18 6 6.1259 -6.6232 4.2961 19 1 6.0722 -5.7502 4.9468 20 6 7.5831 -7.0698 4.1615 21 7 8.3540 -6.0250 3.4745 22 6 5.2975 -7.7599 4.8982 23 9 5.3666 -8.8802 4.0632 24 9 5.8032 -8.0870 6.1610 25 9 3.9652 -7.3514 5.0214 26 6 2.9693 -4.1761 1.4125 27 1 -0.4850 0.8401 -0.0004 28 1 2.6425 -4.1875 -1.9570 29 1 4.5231 -5.7560 -1.7486 30 1 5.4148 -6.3310 0.4692 31 1 5.9855 -6.6749 2.1782 32 1 8.0040 -7.2398 5.1524 33 1 7.6280 -7.9934 3.5843 34 1 8.2750 -5.1418 3.9560 35 1 9.3207 -6.2963 3.3736 36 1 2.5340 -3.7333 2.2961 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580052725.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:55 Heat of formation + Delta-G solvation = -166.335061 kcal Electronic energy + Delta-G solvation = -26093.976788 eV Core-core repulsion = 21674.966077 eV Total energy + Delta-G solvation = -4419.010711 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.070 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.29907 -47.85031 -47.70323 -40.16934 -38.07029 -36.65307 -33.68799 -32.50572 -31.29145 -30.56727 -29.36028 -25.56820 -25.17007 -23.94924 -22.46186 -21.78164 -20.65938 -18.79467 -18.69059 -18.31849 -18.17929 -17.38552 -16.73421 -15.95026 -15.34748 -15.13431 -14.87034 -14.84748 -14.73752 -14.61032 -14.51196 -14.28855 -14.20288 -13.91033 -13.87480 -13.75619 -13.59151 -13.40716 -12.95790 -12.47611 -12.16946 -12.10193 -11.63906 -11.16120 -11.14778 -11.08479 -10.70871 -10.06044 -9.87558 -9.55543 -9.33170 -9.16411 -9.02366 -8.61837 -8.02980 -6.71105 -6.28336 -4.02332 1.11166 1.66099 2.33324 2.66861 2.98940 3.19500 3.22402 3.28213 3.38361 3.45723 3.63454 3.98297 4.08531 4.18929 4.26419 4.35732 4.49820 4.71186 4.91265 5.07198 5.08649 5.14984 5.23639 5.47765 5.71763 5.85840 5.93181 5.98478 6.24015 6.43203 6.55758 6.63076 6.81658 6.91656 7.16374 7.29535 7.57750 8.10337 8.32878 9.17471 10.78403 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.017243 B = 0.002905 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.490621 B = 9637.136627 C = 9785.630356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.074 3.926 3 Si 0.921 3.079 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.271 1.271 7 C -0.520 4.520 8 H 0.076 0.924 9 S -0.034 6.034 10 C -0.107 4.107 11 C -0.053 4.053 12 C -0.141 4.141 13 C -0.085 4.085 14 C -0.153 4.153 15 C 0.567 3.433 16 O -0.520 6.520 17 N -0.710 5.710 18 C 0.110 3.890 19 H 0.129 0.871 20 C 0.052 3.948 21 N -0.840 5.840 22 C 0.436 3.564 23 F -0.182 7.182 24 F -0.183 7.183 25 F -0.166 7.166 26 C -0.017 4.017 27 H 0.270 0.730 28 H 0.132 0.868 29 H 0.124 0.876 30 H 0.119 0.881 31 H 0.413 0.587 32 H 0.058 0.942 33 H 0.092 0.908 34 H 0.349 0.651 35 H 0.352 0.648 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.215 -16.458 5.912 24.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.135 4.135 3 Si 0.747 3.253 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.668 4.668 8 H 0.094 0.906 9 S 0.200 5.800 10 C -0.218 4.218 11 C -0.074 4.074 12 C -0.161 4.161 13 C -0.104 4.104 14 C -0.158 4.158 15 C 0.356 3.644 16 O -0.396 6.396 17 N -0.364 5.364 18 C 0.000 4.000 19 H 0.147 0.853 20 C -0.080 4.080 21 N -0.372 5.372 22 C 0.379 3.621 23 F -0.164 7.164 24 F -0.165 7.165 25 F -0.147 7.147 26 C -0.038 4.038 27 H 0.080 0.920 28 H 0.150 0.850 29 H 0.142 0.858 30 H 0.136 0.864 31 H 0.251 0.749 32 H 0.076 0.924 33 H 0.110 0.890 34 H 0.162 0.838 35 H 0.166 0.834 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 14.992 -16.277 5.939 22.913 hybrid contribution 2.488 0.784 0.787 2.724 sum 17.480 -15.493 6.726 24.307 Atomic orbital electron populations 1.69986 1.05911 1.27675 1.46956 1.25001 0.95114 0.99101 0.94330 0.86122 0.79526 0.81253 0.78430 1.20161 1.20658 1.19566 1.22840 0.94888 0.90191 1.58836 0.90601 1.83624 1.04236 0.97123 1.94979 1.22850 1.03034 1.02119 0.93805 1.21980 0.93211 0.93318 0.98874 1.21061 0.98139 0.99929 0.96945 1.21147 0.98569 0.98462 0.92259 1.19698 1.00949 1.03605 0.91562 1.18565 0.78575 0.77591 0.89671 1.90809 1.58351 1.52047 1.38371 1.45588 1.35942 1.47704 1.07175 1.21991 0.92842 0.96261 0.88879 0.85336 1.21995 0.90055 0.96638 0.99297 1.58531 1.16527 1.05335 1.56779 1.21205 0.80459 0.84050 0.76341 1.93169 1.96270 1.55423 1.71540 1.93177 1.87141 1.93562 1.42615 1.93290 1.35713 1.90020 1.95677 1.21950 0.91759 0.91865 0.98247 0.92050 0.85026 0.85769 0.86364 0.74934 0.92393 0.88994 0.83818 0.83428 0.84270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.42 13.22 55.49 0.73 -24.69 16 2 C 0.07 2.06 5.49 -17.46 -0.10 1.96 16 3 Si 0.92 21.37 29.55 -169.99 -5.02 16.35 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.52 -14.63 9.46 30.92 0.29 -14.34 16 8 H 0.08 2.11 7.79 -52.49 -0.41 1.70 16 9 S -0.03 -0.88 21.40 -107.50 -2.30 -3.18 16 10 C -0.11 -2.28 5.45 -38.99 -0.21 -2.49 16 11 C -0.05 -0.93 9.79 -39.25 -0.38 -1.32 16 12 C -0.14 -1.99 10.02 -39.68 -0.40 -2.38 16 13 C -0.09 -1.15 9.54 -39.12 -0.37 -1.52 16 14 C -0.15 -2.54 5.87 -105.00 -0.62 -3.15 16 15 C 0.57 8.78 7.31 -12.32 -0.09 8.69 16 16 O -0.52 -9.80 14.92 5.32 0.08 -9.72 16 17 N -0.71 -7.76 4.67 -54.74 -0.26 -8.01 16 18 C 0.11 1.02 2.30 -67.93 -0.16 0.86 16 19 H 0.13 1.29 7.58 -51.92 -0.39 0.89 16 20 C 0.05 0.30 6.10 -3.82 -0.02 0.28 16 21 N -0.84 -4.60 9.35 -10.37 -0.10 -4.69 16 22 C 0.44 4.74 2.82 37.16 0.10 4.85 16 23 F -0.18 -1.91 16.63 2.25 0.04 -1.88 16 24 F -0.18 -1.86 16.89 2.25 0.04 -1.82 16 25 F -0.17 -2.41 15.68 2.25 0.04 -2.37 16 26 C -0.02 -0.33 9.34 -38.92 -0.36 -0.70 16 27 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 28 H 0.13 2.21 8.06 -52.49 -0.42 1.79 16 29 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 30 H 0.12 1.13 6.40 -52.49 -0.34 0.80 16 31 H 0.41 3.67 6.63 -40.82 -0.27 3.40 16 32 H 0.06 0.27 7.94 -51.93 -0.41 -0.14 16 33 H 0.09 0.49 7.66 -51.93 -0.40 0.09 16 34 H 0.35 1.94 8.99 -39.29 -0.35 1.59 16 35 H 0.35 1.23 9.08 -39.29 -0.36 0.87 16 36 H 0.14 3.04 7.65 -52.49 -0.40 2.64 16 LS Contribution 341.27 15.07 5.14 5.14 Total: -1.00 -33.00 341.27 -7.24 -40.24 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -3.31 Total: 3.89 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -2.32 Total: -9.26 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.38 Total: -37.40 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.08 Total: -9.72 kcal Atomic # 9 Polarization: -6.18 SS G_CDS: 0.11 Total: -6.07 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -0.88 SS G_CDS: -2.30 Total: -3.18 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.00 -7.24 -40.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052725.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.093 kcal (2) G-P(sol) polarization free energy of solvation -33.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds