Wall clock time and date at job start Tue Mar 31 2020 19:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86808 * 120.00349 * 2 1 4 4 H 1.48507 * 109.46828 * 269.99564 * 3 2 1 5 5 H 1.48497 * 109.47025 * 29.99411 * 3 2 1 6 6 H 1.48494 * 109.47393 * 149.99620 * 3 2 1 7 7 C 1.38735 * 119.99938 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99573 * 180.02562 * 7 2 1 9 9 S 1.76196 * 119.99999 * 0.02562 * 7 2 1 10 10 C 1.76194 * 100.00177 * 185.11764 * 9 7 2 11 11 C 1.39223 * 120.02078 * 265.25662 * 10 9 7 12 12 C 1.38136 * 120.20041 * 179.73916 * 11 10 9 13 13 C 1.38082 * 120.24366 * 0.51175 * 12 11 10 14 14 C 1.39629 * 120.03856 * 359.76550 * 13 12 11 15 15 C 1.47867 * 120.09965 * 179.97438 * 14 13 12 16 16 O 1.21554 * 120.00163 * 180.02562 * 15 14 13 17 17 N 1.34774 * 119.99860 * 0.02562 * 15 14 13 18 18 C 1.46507 * 119.99929 * 180.02562 * 17 15 14 19 19 H 1.09008 * 109.46955 * 324.99929 * 18 17 15 20 20 C 1.53001 * 109.47184 * 205.00549 * 18 17 15 21 21 N 1.46901 * 109.47068 * 54.99544 * 20 18 17 22 22 C 1.52998 * 109.47103 * 85.00103 * 18 17 15 23 23 F 1.39895 * 109.47134 * 60.00206 * 22 18 17 24 24 F 1.39904 * 109.46799 * 180.02562 * 22 18 17 25 25 F 1.39903 * 109.47266 * 299.99817 * 22 18 17 26 26 C 1.38839 * 120.02036 * 85.52685 * 10 9 7 27 27 H 0.97003 * 119.99827 * 0.02562 * 1 2 3 28 28 H 1.07999 * 119.90035 * 359.97438 * 11 10 9 29 29 H 1.08000 * 119.87689 * 180.23260 * 12 11 10 30 30 H 1.08002 * 119.97646 * 179.74476 * 13 12 11 31 31 H 0.96996 * 120.00509 * 0.02562 * 17 15 14 32 32 H 1.08996 * 109.46883 * 174.99788 * 20 18 17 33 33 H 1.09000 * 109.46534 * 294.99754 * 20 18 17 34 34 H 1.00895 * 110.99885 * 56.05281 * 21 20 18 35 35 H 1.00903 * 110.99506 * 179.97438 * 21 20 18 36 36 H 1.07996 * 120.11843 * 359.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4002 5 1 1.4478 2.6527 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0098 -1.2015 0.0005 8 1 3.0898 -1.2014 0.0010 9 16 1.1288 -2.7274 0.0005 10 6 2.4725 -3.8565 0.1561 11 6 3.0329 -4.4331 -0.9805 12 6 4.0899 -5.3147 -0.8632 13 6 4.5909 -5.6381 0.3822 14 6 4.0327 -5.0701 1.5292 15 6 4.5678 -5.4159 2.8636 16 8 4.0803 -4.9208 3.8609 17 7 5.5961 -6.2801 2.9740 18 6 6.1259 -6.6232 4.2961 19 1 6.0722 -5.7502 4.9468 20 6 7.5831 -7.0698 4.1615 21 7 8.3540 -6.0250 3.4745 22 6 5.2975 -7.7599 4.8982 23 9 5.3666 -8.8802 4.0632 24 9 5.8032 -8.0870 6.1610 25 9 3.9652 -7.3514 5.0214 26 6 2.9693 -4.1761 1.4125 27 1 -0.4850 0.8401 -0.0004 28 1 2.6425 -4.1875 -1.9570 29 1 4.5231 -5.7560 -1.7486 30 1 5.4148 -6.3310 0.4692 31 1 5.9855 -6.6749 2.1782 32 1 8.0040 -7.2398 5.1524 33 1 7.6280 -7.9934 3.5843 34 1 8.2750 -5.1418 3.9560 35 1 9.3207 -6.2963 3.3736 36 1 2.5340 -3.7333 2.2961 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580052725.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:54 Heat of formation + Delta-G solvation = -190.623770 kcal Electronic energy + Delta-G solvation = -26095.030026 eV Core-core repulsion = 21674.966077 eV Total energy + Delta-G solvation = -4420.063948 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.070 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -51.18793 -48.69558 -48.66819 -41.36306 -39.32128 -37.53396 -34.64745 -34.51058 -32.44441 -31.91276 -30.30076 -27.73721 -25.89734 -25.09463 -23.73539 -22.69058 -21.85647 -20.07102 -19.64596 -19.51162 -19.15122 -18.85747 -17.62516 -17.11725 -16.92697 -16.65675 -16.01588 -15.88656 -15.82197 -15.53496 -15.50330 -15.33961 -15.09675 -14.99303 -14.82408 -14.79824 -14.62515 -14.56116 -14.36246 -13.84440 -13.28778 -13.18057 -13.06246 -12.95729 -12.70643 -12.59974 -12.38770 -11.74409 -11.31274 -11.19127 -10.75782 -10.58977 -9.94520 -9.73400 -9.69241 -8.80060 -8.38515 -6.18703 -0.20662 0.26432 1.29523 1.38192 1.40706 1.47752 1.63662 1.71630 1.89406 2.24876 2.60131 2.78256 2.86399 2.94621 3.12165 3.42711 3.57330 3.60343 3.75473 3.92227 3.95523 4.04077 4.35306 4.40047 4.49752 4.60803 4.68746 4.92490 4.99938 5.21370 5.33435 5.39195 5.51223 5.86296 6.04508 6.16459 6.29001 6.51032 6.97880 7.01812 8.68604 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.017243 B = 0.002905 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.490621 B = 9637.136627 C = 9785.630356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.020 3.980 3 Si 0.992 3.008 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.268 1.268 7 C -0.536 4.536 8 H 0.068 0.932 9 S -0.097 6.097 10 C -0.130 4.130 11 C -0.061 4.061 12 C -0.121 4.121 13 C -0.059 4.059 14 C -0.156 4.156 15 C 0.567 3.433 16 O -0.563 6.563 17 N -0.687 5.687 18 C 0.110 3.890 19 H 0.120 0.880 20 C 0.061 3.939 21 N -0.846 5.846 22 C 0.435 3.565 23 F -0.178 7.178 24 F -0.178 7.178 25 F -0.192 7.192 26 C -0.043 4.043 27 H 0.274 0.726 28 H 0.135 0.865 29 H 0.176 0.824 30 H 0.173 0.827 31 H 0.426 0.574 32 H 0.075 0.925 33 H 0.105 0.895 34 H 0.348 0.652 35 H 0.365 0.635 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.128 -18.208 4.914 28.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.185 4.185 3 Si 0.814 3.186 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.192 1.192 7 C -0.683 4.683 8 H 0.086 0.914 9 S 0.138 5.862 10 C -0.241 4.241 11 C -0.082 4.082 12 C -0.140 4.140 13 C -0.077 4.077 14 C -0.161 4.161 15 C 0.356 3.644 16 O -0.441 6.441 17 N -0.341 5.341 18 C 0.001 3.999 19 H 0.138 0.862 20 C -0.071 4.071 21 N -0.379 5.379 22 C 0.378 3.622 23 F -0.159 7.159 24 F -0.160 7.160 25 F -0.173 7.173 26 C -0.065 4.065 27 H 0.083 0.917 28 H 0.153 0.847 29 H 0.194 0.806 30 H 0.190 0.810 31 H 0.267 0.733 32 H 0.093 0.907 33 H 0.124 0.876 34 H 0.161 0.839 35 H 0.181 0.819 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 18.950 -18.078 4.922 26.649 hybrid contribution 1.377 1.117 1.126 2.101 sum 20.327 -16.961 6.048 27.156 Atomic orbital electron populations 1.70112 1.07555 1.28787 1.47857 1.26013 0.96041 1.02889 0.93607 0.85041 0.78045 0.76393 0.79106 1.18644 1.19804 1.19218 1.23071 0.94668 0.91577 1.59002 0.91370 1.83512 1.08684 0.98644 1.95348 1.22490 1.03081 1.02828 0.95684 1.22088 0.94395 0.94042 0.97646 1.21554 0.95786 0.97590 0.99055 1.21715 0.98371 0.97090 0.90570 1.19827 0.99868 1.02802 0.93618 1.18466 0.79255 0.78047 0.88656 1.90798 1.59932 1.53907 1.39501 1.45338 1.34204 1.45927 1.08673 1.22196 0.94638 0.95506 0.87532 0.86182 1.21992 0.87337 0.96977 1.00747 1.58537 1.17525 1.05211 1.56642 1.21403 0.79456 0.84591 0.76730 1.93175 1.96153 1.55237 1.71341 1.93185 1.86865 1.93547 1.42357 1.93247 1.37895 1.90353 1.95850 1.21624 0.94006 0.94210 0.96648 0.91716 0.84682 0.80636 0.80960 0.73296 0.90668 0.87633 0.83937 0.81892 0.87894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.96 13.22 21.64 0.29 -54.67 16 2 C 0.02 1.13 5.49 84.84 0.47 1.60 16 3 Si 0.99 44.61 29.55 68.60 2.03 46.64 16 4 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 5 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 7 C -0.54 -31.54 9.46 67.94 0.64 -30.90 16 8 H 0.07 3.96 7.79 -2.91 -0.02 3.94 16 9 S -0.10 -5.31 21.40 -56.49 -1.21 -6.52 16 10 C -0.13 -5.72 5.45 22.65 0.12 -5.60 16 11 C -0.06 -2.09 9.79 22.48 0.22 -1.87 16 12 C -0.12 -2.86 10.02 22.21 0.22 -2.64 16 13 C -0.06 -1.33 9.54 22.57 0.22 -1.11 16 14 C -0.16 -5.00 5.87 -20.11 -0.12 -5.12 16 15 C 0.57 17.11 7.31 86.79 0.63 17.74 16 16 O -0.56 -21.87 14.92 -3.89 -0.06 -21.92 16 17 N -0.69 -13.17 4.67 -445.36 -2.08 -15.24 16 18 C 0.11 1.81 2.30 44.99 0.10 1.91 16 19 H 0.12 2.27 7.58 -2.38 -0.02 2.25 16 20 C 0.06 0.49 6.10 86.30 0.53 1.02 16 21 N -0.85 -6.21 9.35 -186.72 -1.75 -7.96 16 22 C 0.43 8.74 2.82 71.98 0.20 8.95 16 23 F -0.18 -3.26 16.63 44.97 0.75 -2.51 16 24 F -0.18 -3.30 16.89 44.97 0.76 -2.54 16 25 F -0.19 -5.57 15.68 44.97 0.70 -4.86 16 26 C -0.04 -1.82 9.34 22.70 0.21 -1.61 16 27 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 28 H 0.14 4.46 8.06 -2.91 -0.02 4.44 16 29 H 0.18 2.51 8.06 -2.91 -0.02 2.49 16 30 H 0.17 2.06 6.40 -2.91 -0.02 2.04 16 31 H 0.43 5.58 6.63 -92.71 -0.61 4.96 16 32 H 0.08 0.42 7.94 -2.39 -0.02 0.40 16 33 H 0.11 0.63 7.66 -2.39 -0.02 0.61 16 34 H 0.35 2.90 8.99 -89.70 -0.81 2.09 16 35 H 0.37 1.15 9.08 -89.69 -0.81 0.34 16 36 H 0.10 4.99 7.65 -2.91 -0.02 4.96 16 Total: -1.00 -78.48 341.27 1.83 -76.65 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -1.05 Total: 10.58 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: 3.45 Total: -17.63 kcal Atomic # 7 Polarization: -74.34 SS G_CDS: -3.54 Total: -77.87 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.06 Total: -21.92 kcal Atomic # 9 Polarization: -12.13 SS G_CDS: 2.21 Total: -9.92 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Atomic # 16 Polarization: -5.31 SS G_CDS: -1.21 Total: -6.52 kcal Total: -78.48 1.83 -76.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052725.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.976 kcal (2) G-P(sol) polarization free energy of solvation -78.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds