Wall clock time and date at job start Tue Mar 31 2020 17:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47453 * 306.28209 * 3 2 1 5 5 C 1.36938 * 120.00234 * 273.40461 * 4 3 2 6 6 H 1.07997 * 119.99904 * 186.53456 * 5 4 3 7 7 C 1.38812 * 119.99731 * 6.53937 * 5 4 3 8 8 N 1.31619 * 120.00208 * 24.53019 * 7 5 4 9 9 Si 1.86804 * 119.99639 * 204.53319 * 7 5 4 10 10 H 1.48498 * 109.47187 * 84.92683 * 9 7 5 11 11 H 1.48502 * 109.46768 * 204.92455 * 9 7 5 12 12 H 1.48497 * 109.47191 * 324.92522 * 9 7 5 13 13 S 1.65602 * 119.99547 * 93.40149 * 4 3 2 14 14 O 1.42107 * 106.39867 * 156.46527 * 13 4 3 15 15 O 1.42099 * 106.40587 * 23.54355 * 13 4 3 16 16 C 1.76202 * 107.21825 * 270.00128 * 13 4 3 17 17 C 1.38314 * 119.87872 * 90.00091 * 16 13 4 18 18 C 1.38030 * 120.11631 * 180.02562 * 17 16 13 19 19 C 1.39305 * 119.87775 * 359.97438 * 18 17 16 20 20 C 1.48467 * 120.11220 * 179.97438 * 19 18 17 21 21 N 1.34047 * 126.67850 * 0.02936 * 20 19 18 22 22 N 1.28981 * 107.27257 * 179.97438 * 21 20 19 23 23 N 1.28730 * 108.94292 * 359.97438 * 22 21 20 24 24 H 0.97002 * 125.34179 * 179.97438 * 23 22 21 25 25 N 1.28877 * 109.31927 * 0.02562 * 23 22 21 26 26 C 1.39298 * 119.76805 * 0.25381 * 19 18 17 27 27 C 1.38021 * 119.88152 * 359.49288 * 26 19 18 28 28 H 1.09009 * 109.47362 * 186.28618 * 3 2 1 29 29 H 1.09004 * 109.47603 * 66.28602 * 3 2 1 30 30 H 0.97003 * 119.99760 * 179.97438 * 8 7 5 31 31 H 1.07995 * 119.94233 * 0.02562 * 17 16 13 32 32 H 1.07999 * 120.06267 * 180.02562 * 18 17 16 33 33 H 1.08003 * 120.05892 * 179.74264 * 26 19 18 34 34 H 1.08000 * 119.94351 * 180.23092 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0968 -0.8165 1.1134 5 6 3.2584 -0.2580 2.3533 6 1 3.7170 -0.8290 3.1470 7 6 2.8328 1.0419 2.5898 8 7 1.8807 1.5678 1.8486 9 14 3.6113 2.0448 3.9601 10 1 4.8500 2.6916 3.4578 11 1 2.6568 3.0882 4.4133 12 1 3.9458 1.1518 5.0984 13 16 3.4537 -2.4155 0.8725 14 8 4.3784 -2.7777 1.8890 15 8 3.7267 -2.5613 -0.5143 16 6 1.9824 -3.3318 1.1891 17 6 1.0942 -3.5863 0.1597 18 6 -0.0601 -4.3031 0.4023 19 6 -0.3295 -4.7709 1.6864 20 6 -1.5699 -5.5420 1.9533 21 7 -2.5191 -5.8648 1.0635 22 7 -3.4234 -6.5342 1.6941 23 7 -3.0787 -6.6410 2.9298 24 1 -3.5879 -7.0989 3.6168 25 7 -1.9515 -6.0432 3.1112 26 6 0.5660 -4.5078 2.7204 27 6 1.7199 -3.7945 2.4659 28 1 2.9709 1.0224 0.1125 29 1 2.9716 -0.4125 -0.9409 30 1 1.5831 2.4760 2.0142 31 1 1.3043 -3.2234 -0.8355 32 1 -0.7528 -4.5016 -0.4022 33 1 0.3598 -4.8647 3.7187 34 1 2.4167 -3.5931 3.2660 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592677309.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:29 Heat of formation + Delta-G solvation = 126.539840 kcal Electronic energy + Delta-G solvation = -25846.834659 eV Core-core repulsion = 21911.133104 eV Total energy + Delta-G solvation = -3935.701554 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 334.063 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.54637 -38.80028 -36.80766 -36.08356 -34.66561 -34.52760 -34.48098 -33.63373 -31.84289 -30.74773 -30.43264 -27.60165 -24.90620 -24.58453 -24.19410 -22.22932 -21.63184 -19.30164 -18.78459 -18.21239 -17.48540 -17.23391 -16.82143 -16.33084 -15.81405 -15.15425 -14.74679 -14.46819 -14.17768 -13.93159 -13.55772 -13.20126 -13.10544 -12.85200 -12.72994 -12.42393 -12.14431 -11.82991 -11.57967 -11.49391 -11.47074 -11.33647 -11.15989 -11.01838 -10.97819 -10.94936 -10.78495 -10.65249 -10.37267 -10.21876 -10.06400 -9.70403 -8.72813 -8.69615 -8.54977 -6.86689 -4.18992 0.60032 1.07696 1.45914 1.66809 2.11725 2.30089 3.01082 3.08615 3.12297 3.57942 3.63144 3.88395 3.93146 4.08327 4.13170 4.42588 4.51127 4.85844 5.05146 5.15509 5.22444 5.27416 5.35706 5.48165 5.67917 5.88429 5.94847 6.04403 6.21351 6.28836 6.42283 6.44901 6.54452 6.62398 6.81474 7.07150 7.13840 7.94602 8.04195 8.33915 8.75999 8.81934 10.11881 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.014796 B = 0.003909 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.009781 B = 7160.876462 C = 7490.408504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C 0.239 3.761 3 C 0.223 3.777 4 N -0.795 5.795 5 C -0.244 4.244 6 H 0.130 0.870 7 C 0.031 3.969 8 N -0.833 5.833 9 Si 0.939 3.061 10 H -0.268 1.268 11 H -0.282 1.282 12 H -0.263 1.263 13 S 2.534 3.466 14 O -0.974 6.974 15 O -0.989 6.989 16 C -0.640 4.640 17 C -0.033 4.033 18 C -0.098 4.098 19 C 0.003 3.997 20 C 0.225 3.775 21 N -0.266 5.266 22 N -0.053 5.053 23 N -0.230 5.230 24 H 0.474 0.526 25 N -0.293 5.293 26 C -0.104 4.104 27 C -0.028 4.028 28 H 0.135 0.865 29 H 0.103 0.897 30 H 0.283 0.717 31 H 0.137 0.863 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.305 -7.332 2.439 8.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.153 5.153 2 C -0.080 4.080 3 C 0.093 3.907 4 N -0.618 5.618 5 C -0.391 4.391 6 H 0.147 0.853 7 C -0.181 4.181 8 N -0.472 5.472 9 Si 0.764 3.236 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.187 1.187 13 S 2.632 3.368 14 O -0.963 6.963 15 O -0.979 6.979 16 C -0.719 4.719 17 C -0.052 4.052 18 C -0.119 4.119 19 C 0.000 4.000 20 C -0.054 4.054 21 N -0.139 5.139 22 N -0.048 5.048 23 N -0.076 5.076 24 H 0.328 0.672 25 N -0.144 5.144 26 C -0.125 4.125 27 C -0.047 4.047 28 H 0.153 0.847 29 H 0.121 0.879 30 H 0.094 0.906 31 H 0.155 0.845 32 H 0.152 0.848 33 H 0.150 0.850 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.899 -8.118 1.856 9.662 hybrid contribution -0.513 0.224 1.581 1.678 sum -5.413 -7.894 3.437 10.170 Atomic orbital electron populations 1.80896 1.13644 1.10175 1.10572 1.29515 0.95613 0.91720 0.91141 1.19078 0.81224 1.00372 0.89976 1.55492 1.71564 1.19924 1.14821 1.20261 1.31062 0.96332 0.91412 0.85285 1.25620 0.94891 0.98583 0.99056 1.69945 1.21900 1.16898 1.38484 0.85713 0.78975 0.79082 0.79880 1.19309 1.20731 1.18704 1.11382 0.78265 0.73628 0.73575 1.93384 1.61662 1.82890 1.58376 1.93375 1.85478 1.86054 1.33006 1.32675 1.26306 1.13340 0.99540 1.20786 0.91825 0.94049 0.98570 1.21200 0.97596 0.97645 0.95410 1.17352 0.89196 0.98269 0.95204 1.23823 0.97270 0.99475 0.84862 1.76097 1.00095 1.11820 1.25866 1.78886 1.20600 1.14181 0.91158 1.47717 1.14047 1.36107 1.09739 0.67177 1.74954 1.00401 1.13643 1.25445 1.21210 0.93966 0.99054 0.98253 1.20812 0.95432 0.92776 0.95719 0.84742 0.87917 0.90569 0.84488 0.84783 0.85012 0.84017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.90 18.54 42.15 0.78 -10.11 16 2 C 0.24 5.09 13.35 -20.76 -0.28 4.82 16 3 C 0.22 4.27 5.45 -6.83 -0.04 4.24 16 4 N -0.80 -16.50 2.88 -62.77 -0.18 -16.68 16 5 C -0.24 -5.22 9.48 -15.06 -0.14 -5.37 16 6 H 0.13 2.72 7.21 -52.49 -0.38 2.34 16 7 C 0.03 0.64 4.95 -17.43 -0.09 0.56 16 8 N -0.83 -18.19 8.92 55.49 0.49 -17.69 16 9 Si 0.94 16.80 29.62 -169.99 -5.03 11.77 16 10 H -0.27 -4.73 7.11 56.52 0.40 -4.33 16 11 H -0.28 -5.16 7.11 56.52 0.40 -4.76 16 12 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 13 S 2.53 52.55 5.65 -107.50 -0.61 51.94 16 14 O -0.97 -21.95 16.05 -57.17 -0.92 -22.87 16 15 O -0.99 -21.28 15.84 -57.17 -0.91 -22.18 16 16 C -0.64 -12.48 5.98 -39.52 -0.24 -12.72 16 17 C -0.03 -0.61 9.51 -39.63 -0.38 -0.99 16 18 C -0.10 -1.69 9.70 -39.26 -0.38 -2.07 16 19 C 0.00 0.06 5.88 -104.89 -0.62 -0.56 16 20 C 0.23 3.52 7.94 -156.30 -1.24 2.28 16 21 N -0.27 -4.13 12.23 32.16 0.39 -3.74 16 22 N -0.05 -0.68 13.47 60.35 0.81 0.13 16 23 N -0.23 -2.30 7.90 60.35 0.48 -1.83 16 24 H 0.47 2.18 8.96 -340.37 -3.05 -0.87 16 25 N -0.29 -3.87 12.08 32.17 0.39 -3.49 16 26 C -0.10 -1.72 9.70 -39.27 -0.38 -2.10 16 27 C -0.03 -0.51 9.51 -39.63 -0.38 -0.89 16 28 H 0.14 2.50 6.39 -51.92 -0.33 2.17 16 29 H 0.10 1.71 6.94 -51.93 -0.36 1.35 16 30 H 0.28 5.95 8.31 -40.82 -0.34 5.62 16 31 H 0.14 2.38 7.60 -52.49 -0.40 1.99 16 32 H 0.13 2.09 7.89 -52.49 -0.41 1.68 16 33 H 0.13 1.87 7.88 -52.48 -0.41 1.46 16 34 H 0.14 2.41 7.61 -52.49 -0.40 2.01 16 LS Contribution 324.73 15.07 4.89 4.89 Total: -1.00 -29.86 324.73 -8.44 -38.30 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -4.88 Total: 4.36 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -4.15 Total: -12.80 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: 3.17 Total: -53.40 kcal Atomic # 8 Polarization: -43.23 SS G_CDS: -1.82 Total: -45.05 kcal Atomic # 14 Polarization: 16.80 SS G_CDS: -5.03 Total: 11.77 kcal Atomic # 16 Polarization: 52.55 SS G_CDS: -0.61 Total: 51.94 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.86 -8.44 -38.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592677309.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.836 kcal (2) G-P(sol) polarization free energy of solvation -29.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds