Wall clock time and date at job start Tue Mar 31 2020 17:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47453 * 306.28209 * 3 2 1 5 5 C 1.36938 * 120.00234 * 273.40461 * 4 3 2 6 6 H 1.07997 * 119.99904 * 186.53456 * 5 4 3 7 7 C 1.38812 * 119.99731 * 6.53937 * 5 4 3 8 8 N 1.31619 * 120.00208 * 24.53019 * 7 5 4 9 9 Si 1.86804 * 119.99639 * 204.53319 * 7 5 4 10 10 H 1.48498 * 109.47187 * 84.92683 * 9 7 5 11 11 H 1.48502 * 109.46768 * 204.92455 * 9 7 5 12 12 H 1.48497 * 109.47191 * 324.92522 * 9 7 5 13 13 S 1.65602 * 119.99547 * 93.40149 * 4 3 2 14 14 O 1.42107 * 106.39867 * 156.46527 * 13 4 3 15 15 O 1.42099 * 106.40587 * 23.54355 * 13 4 3 16 16 C 1.76202 * 107.21825 * 270.00128 * 13 4 3 17 17 C 1.38314 * 119.87872 * 90.00091 * 16 13 4 18 18 C 1.38030 * 120.11631 * 180.02562 * 17 16 13 19 19 C 1.39305 * 119.87775 * 359.97438 * 18 17 16 20 20 C 1.48467 * 120.11220 * 179.97438 * 19 18 17 21 21 N 1.34047 * 126.67850 * 0.02936 * 20 19 18 22 22 N 1.28981 * 107.27257 * 179.97438 * 21 20 19 23 23 N 1.28730 * 108.94292 * 359.97438 * 22 21 20 24 24 H 0.97002 * 125.34179 * 179.97438 * 23 22 21 25 25 N 1.28877 * 109.31927 * 0.02562 * 23 22 21 26 26 C 1.39298 * 119.76805 * 0.25381 * 19 18 17 27 27 C 1.38021 * 119.88152 * 359.49288 * 26 19 18 28 28 H 1.09009 * 109.47362 * 186.28618 * 3 2 1 29 29 H 1.09004 * 109.47603 * 66.28602 * 3 2 1 30 30 H 0.97003 * 119.99760 * 179.97438 * 8 7 5 31 31 H 1.07995 * 119.94233 * 0.02562 * 17 16 13 32 32 H 1.07999 * 120.06267 * 180.02562 * 18 17 16 33 33 H 1.08003 * 120.05892 * 179.74264 * 26 19 18 34 34 H 1.08000 * 119.94351 * 180.23092 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0968 -0.8165 1.1134 5 6 3.2584 -0.2580 2.3533 6 1 3.7170 -0.8290 3.1470 7 6 2.8328 1.0419 2.5898 8 7 1.8807 1.5678 1.8486 9 14 3.6113 2.0448 3.9601 10 1 4.8500 2.6916 3.4578 11 1 2.6568 3.0882 4.4133 12 1 3.9458 1.1518 5.0984 13 16 3.4537 -2.4155 0.8725 14 8 4.3784 -2.7777 1.8890 15 8 3.7267 -2.5613 -0.5143 16 6 1.9824 -3.3318 1.1891 17 6 1.0942 -3.5863 0.1597 18 6 -0.0601 -4.3031 0.4023 19 6 -0.3295 -4.7709 1.6864 20 6 -1.5699 -5.5420 1.9533 21 7 -2.5191 -5.8648 1.0635 22 7 -3.4234 -6.5342 1.6941 23 7 -3.0787 -6.6410 2.9298 24 1 -3.5879 -7.0989 3.6168 25 7 -1.9515 -6.0432 3.1112 26 6 0.5660 -4.5078 2.7204 27 6 1.7199 -3.7945 2.4659 28 1 2.9709 1.0224 0.1125 29 1 2.9716 -0.4125 -0.9409 30 1 1.5831 2.4760 2.0142 31 1 1.3043 -3.2234 -0.8355 32 1 -0.7528 -4.5016 -0.4022 33 1 0.3598 -4.8647 3.7187 34 1 2.4167 -3.5931 3.2660 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592677309.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:28 Heat of formation + Delta-G solvation = 106.048978 kcal Electronic energy + Delta-G solvation = -25847.723209 eV Core-core repulsion = 21911.133104 eV Total energy + Delta-G solvation = -3936.590105 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 334.063 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -45.60295 -40.16476 -38.41848 -37.81663 -36.41018 -36.22078 -35.57770 -34.77869 -33.44158 -32.11974 -31.72794 -29.18987 -26.07119 -25.84879 -25.71786 -23.56505 -22.90516 -20.42395 -20.30192 -19.81791 -19.01476 -18.40131 -18.27170 -17.84277 -17.26903 -16.67867 -16.26927 -15.88906 -15.56783 -15.27087 -15.03744 -14.73572 -14.51587 -14.25238 -14.09251 -13.94211 -13.50868 -13.32171 -13.19301 -13.15994 -12.80333 -12.71202 -12.56206 -12.54907 -12.47498 -12.22025 -12.11665 -12.10972 -11.98856 -11.80384 -11.65909 -11.26642 -10.21584 -10.07588 -10.00750 -8.43783 -5.84627 -0.70726 -0.16849 0.02808 0.28732 1.04158 1.29949 1.57974 1.64319 1.71582 1.97905 2.35080 2.42892 2.47433 2.52706 2.81347 2.92049 2.99762 3.21839 3.60373 3.69675 3.86947 3.96648 3.99088 4.27950 4.31070 4.44741 4.54150 4.59333 4.90527 4.92937 5.05941 5.16255 5.20625 5.27680 5.48212 5.51758 5.75764 6.33817 6.74968 6.97272 7.14641 7.15973 8.54913 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.014796 B = 0.003909 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.009781 B = 7160.876462 C = 7490.408504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C 0.253 3.747 3 C 0.221 3.779 4 N -0.806 5.806 5 C -0.272 4.272 6 H 0.126 0.874 7 C 0.007 3.993 8 N -0.860 5.860 9 Si 0.991 3.009 10 H -0.262 1.262 11 H -0.288 1.288 12 H -0.262 1.262 13 S 2.562 3.438 14 O -0.993 6.993 15 O -0.999 6.999 16 C -0.662 4.662 17 C -0.043 4.043 18 C -0.104 4.104 19 C 0.007 3.993 20 C 0.206 3.794 21 N -0.289 5.289 22 N -0.051 5.051 23 N -0.195 5.195 24 H 0.497 0.503 25 N -0.285 5.285 26 C -0.101 4.101 27 C -0.038 4.038 28 H 0.141 0.859 29 H 0.128 0.872 30 H 0.282 0.718 31 H 0.142 0.858 32 H 0.147 0.853 33 H 0.157 0.843 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.955 -8.426 3.313 9.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.189 5.189 2 C -0.065 4.065 3 C 0.092 3.908 4 N -0.629 5.629 5 C -0.416 4.416 6 H 0.144 0.856 7 C -0.202 4.202 8 N -0.500 5.500 9 Si 0.814 3.186 10 H -0.187 1.187 11 H -0.214 1.214 12 H -0.187 1.187 13 S 2.662 3.338 14 O -0.983 6.983 15 O -0.988 6.988 16 C -0.743 4.743 17 C -0.062 4.062 18 C -0.124 4.124 19 C 0.003 3.997 20 C -0.074 4.074 21 N -0.162 5.162 22 N -0.046 5.046 23 N -0.047 5.047 24 H 0.356 0.644 25 N -0.138 5.138 26 C -0.122 4.122 27 C -0.057 4.057 28 H 0.159 0.841 29 H 0.146 0.854 30 H 0.092 0.908 31 H 0.160 0.840 32 H 0.165 0.835 33 H 0.175 0.825 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.541 -9.190 2.746 11.077 hybrid contribution -0.444 0.307 1.327 1.432 sum -5.985 -8.884 4.073 11.460 Atomic orbital electron populations 1.80884 1.14704 1.11453 1.11824 1.29903 0.95966 0.90598 0.90024 1.19311 0.80023 1.00924 0.90528 1.55186 1.72572 1.20065 1.15118 1.20314 1.32776 0.97068 0.91490 0.85641 1.26154 0.94762 0.98791 1.00513 1.70000 1.22940 1.17009 1.40011 0.84936 0.78160 0.77605 0.77860 1.18690 1.21393 1.18660 1.09736 0.77759 0.73456 0.72884 1.93363 1.62522 1.83309 1.59059 1.93363 1.85763 1.86319 1.33394 1.32362 1.25984 1.15241 1.00745 1.20918 0.92224 0.94416 0.98620 1.21366 0.97401 0.97381 0.96275 1.17531 0.89658 0.97445 0.95033 1.23613 0.97365 1.00726 0.85698 1.76087 1.00584 1.12759 1.26734 1.78839 1.20005 1.13934 0.91849 1.47787 1.12962 1.34233 1.09688 0.64356 1.74903 1.01120 1.13265 1.24528 1.21433 0.93108 0.98252 0.99399 1.21003 0.96323 0.92971 0.95375 0.84133 0.85431 0.90757 0.84020 0.83480 0.82524 0.83373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -23.49 18.54 20.01 0.37 -23.12 16 2 C 0.25 10.79 13.35 89.44 1.19 11.99 16 3 C 0.22 8.42 5.45 84.57 0.46 8.88 16 4 N -0.81 -33.32 2.88 -352.49 -1.02 -34.33 16 5 C -0.27 -11.67 9.48 84.03 0.80 -10.88 16 6 H 0.13 5.34 7.21 -2.91 -0.02 5.32 16 7 C 0.01 0.29 4.95 84.86 0.42 0.71 16 8 N -0.86 -37.66 8.92 21.65 0.19 -37.47 16 9 Si 0.99 34.16 29.62 68.60 2.03 36.19 16 10 H -0.26 -8.72 7.11 99.48 0.71 -8.01 16 11 H -0.29 -10.13 7.11 99.48 0.71 -9.43 16 12 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 13 S 2.56 105.44 5.65 -56.49 -0.32 105.12 16 14 O -0.99 -44.54 16.05 -128.00 -2.05 -46.60 16 15 O -1.00 -42.28 15.84 -128.00 -2.03 -44.31 16 16 C -0.66 -25.52 5.98 22.31 0.13 -25.39 16 17 C -0.04 -1.56 9.51 22.24 0.21 -1.34 16 18 C -0.10 -3.48 9.70 22.48 0.22 -3.27 16 19 C 0.01 0.22 5.88 -20.04 -0.12 0.10 16 20 C 0.21 6.02 7.94 137.38 1.09 7.11 16 21 N -0.29 -8.46 12.23 -52.17 -0.64 -9.09 16 22 N -0.05 -1.19 13.47 37.02 0.50 -0.69 16 23 N -0.20 -3.30 7.90 37.02 0.29 -3.01 16 24 H 0.50 2.80 8.96 -347.53 -3.12 -0.31 16 25 N -0.29 -6.74 12.08 -52.12 -0.63 -7.37 16 26 C -0.10 -3.19 9.70 22.47 0.22 -2.97 16 27 C -0.04 -1.34 9.51 22.24 0.21 -1.13 16 28 H 0.14 5.21 6.39 -2.38 -0.02 5.19 16 29 H 0.13 4.14 6.94 -2.39 -0.02 4.12 16 30 H 0.28 11.92 8.31 -92.71 -0.77 11.15 16 31 H 0.14 4.89 7.60 -2.91 -0.02 4.87 16 32 H 0.15 4.47 7.89 -2.91 -0.02 4.44 16 33 H 0.16 4.05 7.88 -2.91 -0.02 4.03 16 34 H 0.15 4.95 7.61 -2.91 -0.02 4.93 16 Total: -1.00 -62.40 324.73 -0.37 -62.76 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -1.91 Total: 18.10 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: 4.84 Total: -16.19 kcal Atomic # 7 Polarization: -114.16 SS G_CDS: -0.93 Total: -115.09 kcal Atomic # 8 Polarization: -86.82 SS G_CDS: -4.08 Total: -90.91 kcal Atomic # 14 Polarization: 34.16 SS G_CDS: 2.03 Total: 36.19 kcal Atomic # 16 Polarization: 105.44 SS G_CDS: -0.32 Total: 105.12 kcal Total: -62.40 -0.37 -62.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592677309.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.814 kcal (2) G-P(sol) polarization free energy of solvation -62.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds